Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22500 428 / 1e-151 UCP5, ATPUMP5, DIC1 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) AT4G24570 406 / 3e-143 DIC2 dicarboxylate carrier 2 (.1) AT5G09470 318 / 3e-108 DIC3 dicarboxylate carrier 3 (.1) AT5G58970 180 / 1e-54 ATUCP2 uncoupling protein 2 (.1.2) AT5G19760 175 / 1e-52 Mitochondrial substrate carrier family protein (.1) AT3G54110 172 / 2e-51 ATUCP1, UCP1, UCP2, UCP, ATPUMP1 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) AT1G14140 166 / 3e-49 Mitochondrial substrate carrier family protein (.1) AT4G03115 122 / 2e-32 Mitochondrial substrate carrier family protein (.1) AT5G01340 77 / 8e-16 AtmSFC1 mitochondrial succinate-fumarate carrier 1, Mitochondrial substrate carrier family protein (.1) AT2G33820 73 / 2e-14 ATMBAC1 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G157300 [exp] 529 / 0 AT2G22500 412 / 2e-145 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045150 [exp] 459 / 5e-164 AT2G22500 457 / 3e-163 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G047800 [exp] 459 / 9e-164 AT4G24570 435 / 2e-154 dicarboxylate carrier 2 (.1) Potri.007G113000 [exp] 458 / 1e-163 AT4G24570 404 / 4e-142 dicarboxylate carrier 2 (.1) Potri.017G045100 [exp] 451 / 8e-161 AT2G22500 451 / 6e-161 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045332 [exp] 405 / 3e-142 AT2G22500 410 / 1e-144 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.017G045400 [exp] 341 / 1e-117 AT4G24570 355 / 4e-123 dicarboxylate carrier 2 (.1) Potri.017G045200 [exp] 277 / 2e-94 AT2G22500 286 / 3e-98 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Potri.001G247800 [exp] 172 / 1e-51 AT5G58970 456 / 3e-163 uncoupling protein 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025725 [exp] 295 / 3e-100 AT2G22500 310 / 2e-106 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10009270 [exp] 196 / 4e-63 AT2G22500 204 / 8e-67 DICARBOXYLATE CARRIER 1, PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 5, uncoupling protein 5 (.1) Lus10035936 [exp] 186 / 1e-57 AT4G24570 209 / 5e-67 dicarboxylate carrier 2 (.1) Lus10015897 [exp] 186 / 2e-57 AT4G24570 184 / 2e-56 dicarboxylate carrier 2 (.1) Lus10027755 [exp] 175 / 1e-52 AT3G54110 515 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10035538 [exp] 172 / 1e-51 AT3G54110 512 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10040709 [exp] 171 / 5e-51 AT5G58970 512 / 0.0 uncoupling protein 2 (.1.2) Lus10007883 [exp] 168 / 1e-48 AT5G19760 536 / 0.0 Mitochondrial substrate carrier family protein (.1) Lus10021123 [exp] 162 / 1e-47 AT3G54110 521 / 0.0 ARABIDOPSIS THALIANA UNCOUPLING PROTEIN 1, ARABIDOPSIS THALIANA PLANT UNCOUPLING MITOCHONDRIAL PROTEIN 1, plant uncoupling mitochondrial protein 1 (.1) Lus10016445 [exp] 159 / 4e-46 AT5G58970 493 / 1e-177 uncoupling protein 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [poplar] [flax] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Potri.002G104400.1 pacid=42777215 polypeptide=Potri.002G104400.1.p locus=Potri.002G104400 ID=Potri.002G104400.1.v4.1 annot-version=v4.1 ATGGGTGTGAAGGGTTTTGTTGAGGGAGGTATTGCATCGATTGTTGCTGGGTGCTCCACTCACCCTATGGATCTAATCAAGGTCCGTATGCAGCTCCAAG GCGAAAACTTACCCAACCCACAGGCTCACAATCTCCGCCCTGCCTATGCCCTTAACTCCGCCGCGATCCCTCATAATTCCATCCATGTCCCTCCCCCACC AACGCGTGTGGGTCCAATTTCTGTCGGCGTCCGCATCATCCAGTCAGAAGGCGTCGCCGCTCTCTACTCCGGCGTCTCCGCCACCGTCCTCCGCCAGACT CTCTACTCCACTACCCGTATGGGACTCTACGATGTTTTGAAGCAGAAATGGACCAATCCGGAGACAGGAAACATGCCGTTGTTGAGCAAAATAACCGCTG GTTTGGTCGCCGGAGGGATCGGAGCGGCTGTTGGCAATCCAGCTGACGTGGCAATGGTTAGAATGCAAGCTGACGGGCGTTTACCCGTGTCCCAAAGGCG GAACTATAAAAGCGTGATTGACGCCATCACGAGAATGTCGAAGCAGGAAGGCGTAACTAGCCTGTGGCGCGGGTCATCTCTTACGGTGAACCGCGCGATG ATTGTCACAGCATCGCAATTGGCATCGTATGATCAGATAAAGGAAATGATCTTGGAGAATGGAGTGATGGGGGATGGGCTAGGGACTCATGTGACGGCGA GTTTTGCTGCCGGCTTTGTGGCGGCGGTGGCATCGAATCCGGTGGATGTGATTAAGACCAGGGTAATGAATATGAAAGTGGAGCCAGGGCAAGCTGCGCC TTACAGAGGAGCTATTGATTGCGCAATGAAGACCGTGAAAGCTGAAGGGGTTATGTCTCTTTATAAGGGCTTTATACCTACAATTTCAAGGCAGGGTCCT TTTACTGTGGTTTTGTTTGTGACTCTTGAGCAGGTTAGAAAGTTGCTCAAAGAATTCTAG
AA sequence Show only first row Show all	>Potri.002G104400.1 pacid=42777215 polypeptide=Potri.002G104400.1.p locus=Potri.002G104400 ID=Potri.002G104400.1.v4.1 annot-version=v4.1 MGVKGFVEGGIASIVAGCSTHPMDLIKVRMQLQGENLPNPQAHNLRPAYALNSAAIPHNSIHVPPPPTRVGPISVGVRIIQSEGVAALYSGVSATVLRQT LYSTTRMGLYDVLKQKWTNPETGNMPLLSKITAGLVAGGIGAAVGNPADVAMVRMQADGRLPVSQRRNYKSVIDAITRMSKQEGVTSLWRGSSLTVNRAM IVTASQLASYDQIKEMILENGVMGDGLGTHVTASFAAGFVAAVASNPVDVIKTRVMNMKVEPGQAAPYRGAIDCAMKTVKAEGVMSLYKGFIPTISRQGP FTVVLFVTLEQVRKLLKEF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22500		UCP5, ATPUMP5, ...	DICARBOXYLATE CARRIER 1, PLANT...		Potri.002G104400 [exp]	0	1
AT3G48990			AMP-dependent synthetase and l...		Potri.001G105900 [exp]	3.00	0.8684
AT5G54310		NEV, AGD5	NEVERSHED, ARF-GAP domain 5 (....		Potri.004G035800 [exp]	4.89	0.8166
AT3G14130			Aldolase-type TIM barrel famil...		Potri.003G069400 [exp]	8.48	0.7814
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.008G131700 [exp]	13.85	0.7835	GAI.2
AT5G08370		ATAGAL2	alpha-galactosidase 2 (.1.2)		Potri.018G152200 [exp]	14.49	0.8298
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Potri.004G024566 [exp]	16.61	0.8306
AT2G31945			unknown protein		Potri.009G024300 [exp]	16.88	0.8301
AT2G14095			unknown protein		Potri.002G101500 [exp]	18.65	0.8303
AT5G16120			alpha/beta-Hydrolases superfam...		Potri.017G114800 [exp]	21.90	0.8040
AT2G46080			unknown protein		Potri.008G085600 [exp]	22.97	0.8287

Compare expression of checked genes

Potri.002G104400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.