Plant FIBer expression Database

Potri.002G104500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G58120 283 / 1e-91 unknown protein
AT5G01710 72 / 2e-13 methyltransferases (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.007G113200
[exp]
280 / 9e-91 AT1G58120 252 / 6e-80 unknown protein
Potri.017G047700
[exp]
275 / 1e-88 AT1G58120 254 / 6e-81 unknown protein
Potri.006G105100
[exp]
73 / 1e-13 AT5G01710 720 / 0.0 methyltransferases (.1)
Potri.016G128100
[exp]
70 / 1e-12 AT5G01710 740 / 0.0 methyltransferases (.1)
Potri.016G088900
[exp]
59 / 2e-09 AT3G53400 420 / 6e-144 unknown protein
Potri.006G128800
[exp]
54 / 1e-07 AT3G53400 418 / 3e-143 unknown protein
Potri.013G153300
[exp]
52 / 4e-07 AT5G01710 498 / 1e-173 methyltransferases (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10012217
[exp]
65 / 5e-11 AT5G01710 733 / 0.0 methyltransferases (.1)
Lus10022682
[exp]
64 / 7e-11 AT5G01710 698 / 0.0 methyltransferases (.1)
Lus10014232
[exp]
63 / 2e-10 AT5G01710 697 / 0.0 methyltransferases (.1)
Lus10001267
[exp]
62 / 4e-10 AT5G01710 737 / 0.0 methyltransferases (.1)
Lus10026502
[exp]
54 / 2e-07 AT3G53400 392 / 1e-133 unknown protein
Lus10019932
[exp]
51 / 9e-07 AT3G53400 385 / 1e-130 unknown protein
PFAM info
Representative CDS sequence
>Potri.002G104500.2 pacid=42777771 polypeptide=Potri.002G104500.2.p locus=Potri.002G104500 ID=Potri.002G104500.2.v4.1 annot-version=v4.1
ATGGCAATTCAATTTCTACAACGATTTCAATCCAAAAACCTCAAGAAAGACAGGCACTTACCCTTGCATACCAAAAGCATTGATTTTTATGGCGACAAAT
ACGTGATCGTCAAGCTCCCTAACATTAGGGCCTTGAGGCTTCTCGCACAATCTTTGCTTTTGGCGTTGATCTTTGCCACATTCCCCTTGTTGAGAACAGT
ACTTTCCGATGCTTCTATATCCTCTGGGTCACCTATTCTTGAGCCTGAATCTGATCCTGATTTATTCGATGCTAAGGTCTTGCCTTTACTTATCCATGAT
TTAGCAAACGAGGGGCTACTTAAAACGGGGGACAATGCAGTTTTTGTTAGCAGTGGCAATGGCAATGGCAATGGCATTGGTAATGCCATTCACATATCTG
AGATCCTCAATGTCAATGATACAAAAATCGTCTCTGCTGCTAATTTGGATCGACAACGCTCAATTCCTGGTGAAGCACTCGACTTCGCCTTCACCTATGA
TGACTTCCAGACGACCTCAGAATTCATTGACCGGACTCTCAAAGTTGGTGGCATTGCGGTTGTTCAACTAAGCAATGATCCTTCCTCTGCATTCGACAAG
CCTTTCAACTACAAAATAGTTTATCTCAGGAGATTTCAGGCCGCTAATATTTTGGCCATGAGGAAAACAGGATATGGGGATGCTAATTTGATCACTCAAA
GGCGGCTTCTAGGATATCATGCCAACGAGGCAAAGAAAGCAGCACTAGAGAACCTGGAAGATGTTCTCCTGGAACCTCCGCGGGCAGCATCAGGTAAATC
GAGCAGATACCTGAAAAGGACAAGATATCTGCCAGACTTAATGGGTGATTCACTTGAAAGTTATCCTCGTCGTGTGTTCATTGATGTGGGGTTGCCAGAG
AAAGAAGGTGGAAGTGGTAATGGATGGTTCGCTAAGAATTATCCTACAAGAAATCTTGATTTCGAAATGTACAAGATTGAGACAGTGACTGAGCAATCGT
CAGGGAAGGAGGTGCCTCAGGTAGAAGAAGTTGGGATGTCAGATTGGTTGAAACATAATGTGAAGGGGGAAGAGTATGTGGTGATGAAGGCAGAGGCGGA
AGTGGTGGAGGAGATGGTGAAAAGCAAGGCAATAAGGTTAGTGGATGAGCTTTTCTTGGAGTGCAAGCCACGAAGGAACGGGAATGGCAGCAAAAAGACC
TACTGGGAATGCTTAGCATTGTATGGAAAGCTAAGGGATGAGGGTGTTGCAGTGCACCAGTGGTGGGGTTGA
AA sequence
>Potri.002G104500.2 pacid=42777771 polypeptide=Potri.002G104500.2.p locus=Potri.002G104500 ID=Potri.002G104500.2.v4.1 annot-version=v4.1
MAIQFLQRFQSKNLKKDRHLPLHTKSIDFYGDKYVIVKLPNIRALRLLAQSLLLALIFATFPLLRTVLSDASISSGSPILEPESDPDLFDAKVLPLLIHD
LANEGLLKTGDNAVFVSSGNGNGNGIGNAIHISEILNVNDTKIVSAANLDRQRSIPGEALDFAFTYDDFQTTSEFIDRTLKVGGIAVVQLSNDPSSAFDK
PFNYKIVYLRRFQAANILAMRKTGYGDANLITQRRLLGYHANEAKKAALENLEDVLLEPPRAASGKSSRYLKRTRYLPDLMGDSLESYPRRVFIDVGLPE
KEGGSGNGWFAKNYPTRNLDFEMYKIETVTEQSSGKEVPQVEEVGMSDWLKHNVKGEEYVVMKAEAEVVEEMVKSKAIRLVDELFLECKPRRNGNGSKKT
YWECLALYGKLRDEGVAVHQWWG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G58120 unknown protein Potri.002G104500
[exp]
0 1
AT5G28237 Pyridoxal-5'-phosphate-depende... Potri.011G024900
[exp]
7.48 0.9431
AT4G39950 CYP79B2 "cytochrome P450, family 79, s... Potri.013G157200
[exp]
7.74 0.9650
AT5G65160 TPR14 tetratricopeptide repeat 14, t... Potri.002G094800
[exp]
13.26 0.9168
AT2G06050 AtOPR3, DDE1, O... DELAYED DEHISCENCE 1, oxophyto... Potri.018G065600
[exp]
13.78 0.8913 OPR3.2
AT3G25780 AOC3, AOC2 allene oxide cyclase 3 (.1) Potri.004G102500
[exp]
14.96 0.9187 MANG.1
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Potri.002G150200
[exp]
15.23 0.9498 CYP76T2,Pt-CYP76.4
AT5G36110 CYP716A1 "cytochrome P450, family 716, ... Potri.018G134300
[exp]
16.73 0.9487
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Potri.002G150400
[exp]
19.44 0.9470
AT5G34930 arogenate dehydrogenase (.1) Potri.006G062600
[exp]
21.84 0.8357
AT2G45550 CYP76C4 "cytochrome P450, family 76, s... Potri.002G150300
[exp]
23.36 0.8935

Potri.002G104500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.