Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	UBP16.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24560 551 / 5e-179 UBP16 ubiquitin-specific protease 16 (.1) AT5G65450 466 / 9e-150 UBP17 ubiquitin-specific protease 17 (.1) AT4G31670 389 / 6e-122 UBP18 ubiquitin-specific protease 18 (.1) AT2G24640 389 / 2e-121 UBP19 ubiquitin-specific protease 19 (.1.2) AT1G17110 377 / 4e-114 UBP15 ubiquitin-specific protease 15 (.1.2) AT3G14400 230 / 8e-64 UBP25 ubiquitin-specific protease 25 (.1) AT5G57990 211 / 3e-56 UBP23 ubiquitin-specific protease 23 (.1) AT5G46740 147 / 6e-36 UBP21 ubiquitin-specific protease 21 (.1) AT4G17895 142 / 2e-34 UBP20 ubiquitin-specific protease 20 (.1) AT2G22310 128 / 8e-32 ATUBP4 ubiquitin-specific protease 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156900 [exp] 1409 / 0 AT4G24560 639 / 0.0 ubiquitin-specific protease 16 (.1) Potri.006G270600 [exp] 397 / 4e-125 AT2G24640 698 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.018G009500 [exp] 399 / 1e-124 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Potri.011G095200 [exp] 390 / 4e-120 AT1G17110 799 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.001G378900 [exp] 387 / 9e-118 AT1G17110 848 / 0.0 ubiquitin-specific protease 15 (.1.2) Potri.011G112800 [exp] 233 / 8e-65 AT3G14400 690 / 0.0 ubiquitin-specific protease 25 (.1) Potri.001G394600 [exp] 227 / 5e-63 AT3G14400 653 / 0.0 ubiquitin-specific protease 25 (.1) Potri.018G107500 [exp] 223 / 5e-60 AT5G57990 580 / 0.0 ubiquitin-specific protease 23 (.1) Potri.006G185200 [exp] 211 / 5e-56 AT5G57990 620 / 0.0 ubiquitin-specific protease 23 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009273 [exp] 818 / 0 AT4G24560 585 / 0.0 ubiquitin-specific protease 16 (.1) Lus10015894 [exp] 462 / 3e-149 AT5G65450 216 / 9e-60 ubiquitin-specific protease 17 (.1) Lus10026918 [exp] 392 / 3e-122 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10020116 [exp] 391 / 6e-122 AT2G24640 686 / 0.0 ubiquitin-specific protease 19 (.1.2) Lus10015893 [exp] 378 / 6e-121 AT4G24560 306 / 2e-95 ubiquitin-specific protease 16 (.1) Lus10013726 [exp] 230 / 4e-64 AT3G14400 641 / 0.0 ubiquitin-specific protease 25 (.1) Lus10005591 [exp] 229 / 9e-64 AT3G14400 639 / 0.0 ubiquitin-specific protease 25 (.1) Lus10035825 [exp] 213 / 8e-57 AT5G57990 537 / 3e-178 ubiquitin-specific protease 23 (.1) Lus10036607 [exp] 213 / 1e-56 AT5G57990 536 / 5e-178 ubiquitin-specific protease 23 (.1) Lus10032623 [exp] 188 / 4e-48 AT5G46740 366 / 1e-110 ubiquitin-specific protease 21 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0175 [poplar] [flax] TRASH PF01753 [poplar] [flax] zf-MYND MYND finger CL0125 [poplar] [flax] Peptidase_CA PF13423 [poplar] [flax] UCH_1 Ubiquitin carboxyl-terminal hydrolase
Representative CDS sequence Show only first row Show all	>Potri.002G104800.1 pacid=42779400 polypeptide=Potri.002G104800.1.p locus=Potri.002G104800 ID=Potri.002G104800.1.v4.1 annot-version=v4.1 ATGCATGTCGAGGGGGATCTAGGGTTTTCGAGCCTAGTGGTCCTTGTTTTCTGTGTAGTGGTTATTCCGGTGGGTTGGTTTGTAATTAGGTGTAAATGGC GGGGAGTGGTTGCGAGAAAGGAGGAGATCAAGAGGTTGATGGTTTTAGCGGCAGAGGAAGCCGCCAGGGCCGAGTTTGAGGCCACGGTTTCGTACAGCAC CGTTCCGGTTTCGTACGGCACCGTTCCGGTTTCAAAAAATAATTACCAGTGTGTTGTTTGTTTTTGCCCGAGAACGACACGGTGTTCCCGCTGTAAAGCT GTTAGATATTGTTCTGGTAAGTGTCAAATTATCCACTGGCGACAAGGTCACAAGGAAGAATGTCGTCGTCCTCCCACCACATACCACATTAATGATGATG GAGGCAATCCTGGCCAGAGGGCGGCAAAGCAAGACCAACATGATATTTATGATGGCAGATATGAGAAAAGACCAATTGAAACATTCTCCGTGGAACCTGT GGTGTCTGATTCCAGTTACTCTCCTGGAGTTTCACTCTTAAAGGATGATGATATTATAGTTGATTCTGTTTTAGACACAGAGGGAGCAGATTCTATTTCT GAATCACCAGGCACCTCATTTTCTGGATTTTCCACTCCTACGGGCTCTTCATTTTCTGGATTCTCTGCTCATTCAAATGGGGAATCATCTGACAGTGTTT CTGTAAGTGAGAGCATTAGTTCAAATGAAACAGAGGGATCAGACAGACAAACACCGGCTGATATTGCCCCTGATACACTGGAGTCCAGTGTGAACGAGGT GGCTACGACCAAACCATCATCTCCAAAGTTTGCTACTTTGGTTGATTCTATAGGTAGTTTTAATAAATTGAGTAAATCAAATCATGGCAATGACAGGGAG AGTCAATGCTCATCTAGTTCTTCAAGCCATAGCATAAGTGCCGGGAATGATGAAACAATCACAAAACCAGCAAAGGTTTCTTCTGGTTTCTGGTGGAGAA CTCTGGATTCTGTTGGGCCCAGCAGTGATGCTGGGGATGGATCTGCTCTGTCAAATTTCAATGGCCCTGGTAACAGCAAGTCATCTAATGACAAACCATC CCTACTTTTCAAGTCCAATCTATCTGGAAGTGATGCTCTCATTTCGCATGCAAAAAGCTCAAAGGTGAACAACATCATATCGGATGATGCACCCCCTTCT GTTCCTGGCGTCAGTAGGCCTGCTGATGGAGCAGTTTCACCAGAAAAGAATGGCTTTGATGCTCTAAAAGTCAAGAGATCCCCAACCATAAGTTTTGAAA GGTCCAATCTTGTTGATAATAACTCTGGTGGAGGTTCAAATGTTTCCATTGAGAGTAAATCTGTATCATCGTCCTCTCCTTATGCACATGTTTCTTTCAG TTCCGGAGGAGTTAAATTAGATCCAAGTGCTTCAAAAGTATGCAGATCTCAAGCTTTGAGATCTGAAAGGTCAAATGTTGTTGTTGATGACATTGTTGAT ACTTCACATCTATCTAAGTACAGATTATCATCTAGTGCTTCTCAAACCCATTTGAATTCTAGTGTCGGTGGGCATTCAGTTTCAAGTGTGAAACTTGGAG GAAAAGTTGAAAATGTTGAACCAGGTGCTGCTGCTACTTCTCAAATTTCTAGCTATTCTCCAAGTTCTATTAATGGATTGAAGTCATCAGTGTGGAAAGT TGTTGACCAATTCAGAGGACCTAAATGTGGGAGATATAGTAATAAGGGCCTTTTCCCATATGATTTATTTGTGAAGTTATACACTTCAAATAAGGTGGAA ATGCGACCATGTGGCCTTATCAATTGTGGAAACAGCTGCTATGCTAATGCTGTTCTACAATGCTTGGCATTTACTCCTCCTTTGACTTCTTATTTTGTGC AAGGGCTCCACTCTAAAGCCTGTGTAAAAAAAGAACGGTGCTTCTCTTGTGAGTTTGAAAAAGTAATTTTAAAGGCAAAGGAAGGGAAATCTCCGCTTTC TCCCATTGGCATACTATCCCAATTACAAAATATTGGGAGTCAGCTTGGTAATGGAAGAGAAGAAGATGCACATGAATTCCTGAGGTATGCAATTGATGCA ATGCAATCTGTTTGCCTTAAGGAAGCTAGGGTGAATGCAGTAGATTCCTTTGAAGAAGAAGCCACTCTCATAGGCCTTACATTTGGAGGCTACCTTCGCT CAAAGATTAAATGCATGAAGTGCCATTACAAGTCAGAGTGGCAGGAAAGAATGATGGATCTTACTGTTGAAATAGAGGGGGATATAGGGAAGCTTGAAGA TGCACTTAGACGATTCACGGGTACCGAGATTCTGGATGGGGACAACAAGTACCAGTGTGGCAGGTGCAGATCTTATGAGAAGGCTAAGAAAAAGTTGACA ATATTGGAGGCTCCTAATGTCCTTACAATTGCATTGAAGCGCTTTCAGTCAGGTAAATTTGGAAAGCTCAATAAATCTATTCGGTTCCCGGAGATCCTGG ACTTAGCACCGTATATGAGTGGAACTAGTGATAAATCACCCATATATAGGCTTTATGGAGTGATTGTTCACTTGGATGTCATGAATGCTGCATTTTCTGG TCACTATGTCTGCTATGTCAAAAACATCCAGAACAAGTGGTTCAAAATTGATGACAGCACAGTTACAGCTGTGGAACTTGAAAGGGTTTTATCAAAAGGC GCTTACATGCTTCTTTATGCAAGGTGCTCACCGAGGGCCCCAAGACTGATAAGGAGCAGAATAATATCTTCTGATCCAAAAAATAAATGCAGTCCCTCCA AAATCAAGGCAACAAACACTGCATTGAATTCAAGATCCATGTCTATGCAATCCAGTGTTCAATCGCATCCAGATTCAATTCCTTCGGACAATTTGGCCAG TGTTGAATCTTTCTATTTGAAGCTCCACCGGCTTCTGAGGATTTCAGAAGAGGACTCATCAAGTGACAATTTCTCTTTTACCAGTGGCAATTCCGATGAA GCTTCCTGCAGTACTGACAGCACCCATGATTCTACAAGTACTGATGACCTTTCTGATTACATTTTTGGAAGTTGGAACTCTTGGAGGAACACATCTGATT CAGACACTTCTTCATCTTCCTCCCCTTTGTACTCAAGGTATTCACCCCATGCTGATAAGAACCAGAATGATTCGCATGCATATTCAAGGATTGGGGGTCC TGATCTTTCGGACAGGATACCAAGCGGGGGGAGGAAGCTGGTGGATCTGGAAGGTAAGAGGGGAAATTCTTTTTTGCATCCTGACACGACTGAACAATGT AGAAAGTTACCAAGTAGTAATAGTTGTAGGGATAAGGTGTCGACAAAATTAGGATCACTTAACCCTTTAAATGATGTAAAATCCGGGGTATCCTTTAGAA GATCAGTAAGCGAAAGAACAGACTAA
AA sequence Show only first row Show all	>Potri.002G104800.1 pacid=42779400 polypeptide=Potri.002G104800.1.p locus=Potri.002G104800 ID=Potri.002G104800.1.v4.1 annot-version=v4.1 MHVEGDLGFSSLVVLVFCVVVIPVGWFVIRCKWRGVVARKEEIKRLMVLAAEEAARAEFEATVSYSTVPVSYGTVPVSKNNYQCVVCFCPRTTRCSRCKA VRYCSGKCQIIHWRQGHKEECRRPPTTYHINDDGGNPGQRAAKQDQHDIYDGRYEKRPIETFSVEPVVSDSSYSPGVSLLKDDDIIVDSVLDTEGADSIS ESPGTSFSGFSTPTGSSFSGFSAHSNGESSDSVSVSESISSNETEGSDRQTPADIAPDTLESSVNEVATTKPSSPKFATLVDSIGSFNKLSKSNHGNDRE SQCSSSSSSHSISAGNDETITKPAKVSSGFWWRTLDSVGPSSDAGDGSALSNFNGPGNSKSSNDKPSLLFKSNLSGSDALISHAKSSKVNNIISDDAPPS VPGVSRPADGAVSPEKNGFDALKVKRSPTISFERSNLVDNNSGGGSNVSIESKSVSSSSPYAHVSFSSGGVKLDPSASKVCRSQALRSERSNVVVDDIVD TSHLSKYRLSSSASQTHLNSSVGGHSVSSVKLGGKVENVEPGAAATSQISSYSPSSINGLKSSVWKVVDQFRGPKCGRYSNKGLFPYDLFVKLYTSNKVE MRPCGLINCGNSCYANAVLQCLAFTPPLTSYFVQGLHSKACVKKERCFSCEFEKVILKAKEGKSPLSPIGILSQLQNIGSQLGNGREEDAHEFLRYAIDA MQSVCLKEARVNAVDSFEEEATLIGLTFGGYLRSKIKCMKCHYKSEWQERMMDLTVEIEGDIGKLEDALRRFTGTEILDGDNKYQCGRCRSYEKAKKKLT ILEAPNVLTIALKRFQSGKFGKLNKSIRFPEILDLAPYMSGTSDKSPIYRLYGVIVHLDVMNAAFSGHYVCYVKNIQNKWFKIDDSTVTAVELERVLSKG AYMLLYARCSPRAPRLIRSRIISSDPKNKCSPSKIKATNTALNSRSMSMQSSVQSHPDSIPSDNLASVESFYLKLHRLLRISEEDSSSDNFSFTSGNSDE ASCSTDSTHDSTSTDDLSDYIFGSWNSWRNTSDSDTSSSSSPLYSRYSPHADKNQNDSHAYSRIGGPDLSDRIPSGGRKLVDLEGKRGNSFLHPDTTEQC RKLPSSNSCRDKVSTKLGSLNPLNDVKSGVSFRRSVSERTD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.002G104800 [exp]	0	1	UBP16.2
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	3.00	0.7992
AT5G08470		EMB2817, PEX1	EMBRYO DEFECTIVE 2817, peroxis...		Potri.001G174100 [exp]	3.74	0.8067
AT5G55310		TOP1alpha, TOP1...	DNA topoisomerase 1 beta (.1)		Potri.001G359700 [exp]	12.96	0.7940	TOP1.1
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	13.11	0.8035
AT3G10390		FLD	FLOWERING LOCUS D, Flavin cont...		Potri.008G035200 [exp]	14.49	0.7916
AT3G48430	JUMONJI	JMJ12, REF6	Jumonji domain-containing prot...		Potri.012G092400 [exp]	17.32	0.7454
					Potri.014G023301 [exp]	24.67	0.7589
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Potri.002G181400 [exp]	24.69	0.7777	SIN1.1,DCL902
AT5G37020	ARF	ARF8, ATARF8	auxin response factor 8 (.1.2)		Potri.005G207700 [exp]	26.49	0.7501
AT5G53060			RNA-binding KH domain-containi...		Potri.002G112200 [exp]	27.56	0.7636

Compare expression of checked genes

Potri.002G104800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.