Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24550 817 / 0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) AT1G10730 250 / 1e-78 Clathrin adaptor complexes medium subunit family protein (.1) AT1G60780 248 / 6e-78 HAP13 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) AT5G46630 244 / 3e-76 Clathrin adaptor complexes medium subunit family protein (.1.2) AT1G56590 134 / 5e-35 ZIP4 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G105050 [exp] 341 / 8e-118 AT4G24550 299 / 9e-102 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Potri.008G187600 [exp] 261 / 1e-82 AT1G60780 831 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.010G044700 [exp] 254 / 3e-80 AT1G60780 834 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Potri.003G090800 [exp] 243 / 2e-75 AT5G46630 831 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.001G143800 [exp] 239 / 4e-74 AT5G46630 816 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Potri.013G006400 [exp] 131 / 6e-34 AT1G56590 712 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.005G010600 [exp] 130 / 1e-33 AT1G56590 716 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1) Potri.012G052000 [exp] 41 / 0.0004 AT2G17380 307 / 6e-109 associated protein 19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10024548 [exp] 815 / 0 AT4G24550 804 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10003537 [exp] 809 / 0 AT4G24550 785 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2.3) Lus10004626 [exp] 257 / 4e-81 AT1G60780 827 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10042083 [exp] 250 / 2e-78 AT1G60780 779 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10026688 [exp] 249 / 5e-78 AT1G60780 813 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10030961 [exp] 243 / 1e-75 AT5G46630 837 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10040086 [exp] 243 / 1e-75 AT5G46630 853 / 0.0 Clathrin adaptor complexes medium subunit family protein (.1.2) Lus10018088 [exp] 209 / 6e-60 AT1G60780 632 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10000107 [exp] 177 / 3e-51 AT1G60780 572 / 0.0 HAPLESS 13, Clathrin adaptor complexes medium subunit family protein (.1) Lus10031432 [exp] 133 / 2e-34 AT1G56590 705 / 0.0 ZIG SUPPRESSOR 4, Clathrin adaptor complexes medium subunit family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0448 [poplar] [flax] Cargo_bd_muHD PF00928 [poplar] [flax] Adap_comp_sub Adaptor complexes medium subunit family CL0431 [poplar] [flax] PF PF01217 [poplar] [flax] Clat_adaptor_s Clathrin adaptor complex small chain
Representative CDS sequence Show only first row Show all	>Potri.002G105100.1 pacid=42777087 polypeptide=Potri.002G105100.1.p locus=Potri.002G105100 ID=Potri.002G105100.1.v4.1 annot-version=v4.1 ATGATCTCTCAATTCTTCGTGCTCTCGCAGCGAGGCGACAATATTGTCTTTCGCGATTATCGCGGTGAAGTTCCAAAAGGAAGTGCAGAAATATTTTTCC GCAAAGTCAAGTTTTGGAAGGAAGACGGAGAAGAAGAGGCCCCCCCTGTCTTTAATGTGGATGGTGTAAACTACTTTCATGTGAAAGTAGTTGGATTATT ATTTGTTGCAACCACGAGAGTAAATGTGTCACCTTCTCTGGTCTTGGAACTTTTACAAAGGATTGCTCGTGTTATCAAAGATTATCTTGGGGTTCTCAAT GAAGATTCTCTTCGGAAAAACTTTGTGCTCGTGTATGAGTTGCTTGATGAAGTCATTGATTTTGGTTATGTACAAACCACGTCCACTGAACTGTTGAAGT CCTATGTATTCAATGAGCCACTTGTGGTCGATGCTGCACGTTTGCAACCTCTGAGTCCTGCTGCCATTTTCATGCAAGGGACAAAAAGGATGCCAGGTAC AGCTGTCACAAAGTCTGTTGTTGCAAATGAGCCAGGGGGTAGGAAGAGGGAGGAAATCTTTGTGGATATAATTGAGAAAATCAGTGTGACATTCAGCTCT AGTGGATATATATTGACTTCTGAAATTGATGGCACCATTCAAATGAAGAGCTATCTTTCTGGAAATCCAGAAATCCGATTAGCCCTTAACGAGGACTTGA GCATAGGAAGAGGTGATTATAGAAGTTCATTTGGGTCAGGCTCAGTGATACTTGATGATTGTAATTTCCATGAGTCTGTACGTCTAGATAATTTTGATCT GGATAGAACTTTGACTCTGGTACCGCCAGATGGTGAATTTCCTGTCATGAATTATCGGATGACTCAGGAATTTAAACCTCCTTTTCGCATTAATACTTTG ATAGAAGAAGCAGGTGCACTTAAGGCTGAAGTGATTCTTAAAGTATCTGCTGAATTTCCCTCAAGCATTACCGCAAACACAATCATTGTACAGATGCCAC TGCCAAAATATACCACCAGAGTTAATTTTGAGTTGGAACCTGGAGCACTTGGGCAAACAACAGATTTCAAGGAAGCAAATAGGAGGCTTGAATGGGGATT AAAGAAGATTGTTGGGGGATCAGAGCATACCTTACGTGCAAAGCTGACATTTTCACAGGAGTTGCATGGGAATATCACAAAGGAAGCTGGACCAGTTAGC ATGACATTCACAATTCCGATGTATAATGCTTCACGTCTTCAGGTGAAATACTTGCAGATAGCAAAGAAATCAAGTACATATAATCCATATCGATGGGTGA GATACGTTACACAGGCCAATTCCTATGTTGCCCGTATATGA
AA sequence Show only first row Show all	>Potri.002G105100.1 pacid=42777087 polypeptide=Potri.002G105100.1.p locus=Potri.002G105100 ID=Potri.002G105100.1.v4.1 annot-version=v4.1 MISQFFVLSQRGDNIVFRDYRGEVPKGSAEIFFRKVKFWKEDGEEEAPPVFNVDGVNYFHVKVVGLLFVATTRVNVSPSLVLELLQRIARVIKDYLGVLN EDSLRKNFVLVYELLDEVIDFGYVQTTSTELLKSYVFNEPLVVDAARLQPLSPAAIFMQGTKRMPGTAVTKSVVANEPGGRKREEIFVDIIEKISVTFSS SGYILTSEIDGTIQMKSYLSGNPEIRLALNEDLSIGRGDYRSSFGSGSVILDDCNFHESVRLDNFDLDRTLTLVPPDGEFPVMNYRMTQEFKPPFRINTL IEEAGALKAEVILKVSAEFPSSITANTIIVQMPLPKYTTRVNFELEPGALGQTTDFKEANRRLEWGLKKIVGGSEHTLRAKLTFSQELHGNITKEAGPVS MTFTIPMYNASRLQVKYLQIAKKSSTYNPYRWVRYVTQANSYVARI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24550			Clathrin adaptor complexes med...		Potri.002G105100 [exp]	0	1
AT4G23460			Adaptin family protein (.1)		Potri.001G101400 [exp]	8.83	0.8809
AT5G58290		RPT3	regulatory particle triple-A A...		Potri.006G031000 [exp]	9.94	0.8711	RPT1.3
AT1G45000			AAA-type ATPase family protein...		Potri.005G231700 [exp]	10.04	0.8838	RPT4.1
AT5G43330		c-NAD-MDH2	cytosolic-NAD-dependent malate...		Potri.008G166800 [exp]	13.26	0.8244	CMDH.2
AT5G19780		TUA5	tubulin alpha-5 (.1)		Potri.001G004600 [exp]	18.33	0.8288
AT4G31480			Coatomer, beta subunit (.1.2)		Potri.006G273300 [exp]	24.91	0.8454
AT1G65270			unknown protein		Potri.019G055100 [exp]	26.75	0.8709
AT3G25800		PP2AA2, PR65, P...	protein phosphatase 2A subuni...		Potri.010G127500 [exp]	27.11	0.8107	PDF1.3
AT3G14290		PAE2	20S proteasome alpha subunit E...		Potri.001G162900 [exp]	27.27	0.8522	Pt-PAE1.1
AT1G78570		ATRHM1, RHM1, R...	REPRESSOR OF LRX1 1, ARABIDOPS...		Potri.011G103700 [exp]	27.65	0.8317

Compare expression of checked genes

Potri.002G105100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.