Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G01710 307 / 1e-103 Chaperone DnaJ-domain superfamily protein (.1) AT5G64360 202 / 3e-61 EIP9 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) AT5G09540 190 / 3e-58 Chaperone DnaJ-domain superfamily protein (.1) AT3G06340 132 / 1e-33 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) AT5G27240 128 / 3e-32 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G53150 125 / 2e-31 DNAJ heat shock N-terminal domain-containing protein (.1) AT3G04980 123 / 2e-30 DNAJ heat shock N-terminal domain-containing protein (.1) AT5G37380 119 / 4e-30 Chaperone DnaJ-domain superfamily protein (.1.2.3.4.5) AT2G25560 121 / 5e-30 DNAJ heat shock N-terminal domain-containing protein (.1) AT1G62970 120 / 1e-29 Chaperone DnaJ-domain superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G156100 [exp] 539 / 0 AT2G01710 313 / 9e-106 Chaperone DnaJ-domain superfamily protein (.1) Potri.001G057200 [exp] 151 / 2e-40 AT5G53150 318 / 1e-97 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.003G171200 [exp] 149 / 1e-39 AT5G53150 311 / 6e-95 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.013G029500 [exp] 146 / 1e-38 AT3G04980 524 / 6e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.017G044600 [exp] 142 / 2e-37 AT5G64360 189 / 3e-53 EMF1-Interacting Protein 1, Chaperone DnaJ-domain superfamily protein (.1.2.3.4) Potri.008G196201 [exp] 137 / 3e-37 AT3G06340 249 / 6e-77 DNAJ heat shock N-terminal domain-containing protein (.1.2.3) Potri.012G098800 [exp] 140 / 1e-36 AT5G53150 282 / 5e-84 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.005G043200 [exp] 139 / 3e-36 AT5G27240 416 / 4e-127 DNAJ heat shock N-terminal domain-containing protein (.1) Potri.015G097500 [exp] 137 / 1e-35 AT5G53150 487 / 4e-162 DNAJ heat shock N-terminal domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009275 [exp] 365 / 2e-125 AT2G01710 300 / 2e-100 Chaperone DnaJ-domain superfamily protein (.1) Lus10015891 [exp] 363 / 1e-124 AT2G01710 310 / 2e-104 Chaperone DnaJ-domain superfamily protein (.1) Lus10038816 [exp] 151 / 2e-40 AT5G53150 540 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10008983 [exp] 147 / 7e-39 AT5G53150 509 / 3e-172 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10014927 [exp] 145 / 2e-38 AT5G53150 535 / 0.0 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10028842 [exp] 145 / 2e-38 AT5G53150 498 / 3e-167 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10012736 [exp] 132 / 1e-35 AT2G01710 134 / 8e-37 Chaperone DnaJ-domain superfamily protein (.1) Lus10001726 [exp] 134 / 3e-34 AT5G27240 315 / 9e-94 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001744 [exp] 129 / 2e-33 AT2G05250 322 / 5e-103 DNAJ heat shock N-terminal domain-containing protein (.1) Lus10001171 [exp] 128 / 2e-33 AT2G05250 308 / 2e-98 DNAJ heat shock N-terminal domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0392 [poplar] [flax] Chaperone-J PF00226 [poplar] [flax] DnaJ DnaJ domain
Representative CDS sequence Show only first row Show all	>Potri.002G105500.5 pacid=42779995 polypeptide=Potri.002G105500.5.p locus=Potri.002G105500 ID=Potri.002G105500.5.v4.1 annot-version=v4.1 ATGAACGAAGATCCCAACAGGGCCGAAGCCGAACGCCTCCTCGGAATCGCTGAGAAACTCTTACAATCACGAGATCTCAGCGGCACAAAAGACTTCGCAG TTTTAGCTCAGGAAACGGAGCCCCTTTTGGAAGGCCCAGATCAGATCTTAGCCGTTGCTGATGTTCTTTTATCAGCTGAAAAACGCGTCAACAATCAACA CGACTGGTACTCGATCTTGCAAATCAGTCAGAAAACTGACGATTCCTTCCTCATAAAAAAGCAGTATCGTCGCCTTGCATTACTCCTCCATCCAGACAAG AACAAGTACCCTTTCGCCGACCAAGCCTTCAAGCTCGTCGCTGATGCTGGGGCTGTTTTGTCTGATACTGCTAAAAAAACTTTGTACGATAATGAATTGA GTTTGTTTTCGAAGATTGATTTGTCTGCTTCTGGTAAATTACCAGTCAGGAGAAGCCAGAGATCGGTTGATGATAAAAAGGCTGAAAGTGTGAAAATTAA TGTTAATAATGTGAGTAATCAACAAGAAGGGTCCCAGAAAGCGAAATTGTCTTCCTTTTGGACTGCGTGTCCGTATTGTTATATTTTGTACGAGTATCCT AGGGTTTATGAAAATTGTTGTTTGAGGTGCCAAAATTGCCAAAGAGGGTTTCATGCTGTTTTAATACCCTCTTTGCCTCCTTTGGTTCCCGGGCAGGAGT GTTATTATTGCTGCTGGGGGTTCTTCCCTTTGGGATTTACACCTGGTACCGTAGGGAGTGGAGGGAAAAGTGGTGGGGTGGGTTCAGGGTTTCCTAATTG GATGCCGCCAATGTTTGGGACAGAGCAGCAGCAAGGAGGTGATAAGGGTGGTGGCTATGTAGCGGCAAATGTGGATGATAAGAATGGTAGCGGTGGCGGC CGTAGTGGTGGTGGTGTTAGTGGTAATGGTGCAGCTGCCACACCAGTGAGGGTTGGTGTGGAGAGCAGGGATAGAGTGGTGAAGGTTTCTGGTGGGAGTG CAACGGGCGTGGCTGGGAATGCAATGGGGATGCCAGGGCCAAGGAAGAGAGGAAGGCCTAGGAAGTACCCTGTGCAGGCGTAG
AA sequence Show only first row Show all	>Potri.002G105500.5 pacid=42779995 polypeptide=Potri.002G105500.5.p locus=Potri.002G105500 ID=Potri.002G105500.5.v4.1 annot-version=v4.1 MNEDPNRAEAERLLGIAEKLLQSRDLSGTKDFAVLAQETEPLLEGPDQILAVADVLLSAEKRVNNQHDWYSILQISQKTDDSFLIKKQYRRLALLLHPDK NKYPFADQAFKLVADAGAVLSDTAKKTLYDNELSLFSKIDLSASGKLPVRRSQRSVDDKKAESVKINVNNVSNQQEGSQKAKLSSFWTACPYCYILYEYP RVYENCCLRCQNCQRGFHAVLIPSLPPLVPGQECYYCCWGFFPLGFTPGTVGSGGKSGGVGSGFPNWMPPMFGTEQQQGGDKGGGYVAANVDDKNGSGGG RSGGGVSGNGAAATPVRVGVESRDRVVKVSGGSATGVAGNAMGMPGPRKRGRPRKYPVQA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G01710			Chaperone DnaJ-domain superfam...		Potri.002G105500 [exp]	0	1
AT1G07990			SIT4 phosphatase-associated fa...		Potri.004G211500 [exp]	3.87	0.6856
					Potri.017G061800 [exp]	6.40	0.6999
AT5G22000		RHF2A, CIC7E11	RING-H2 group F2A (.1.2.3)		Potri.006G200200 [exp]	8.00	0.6867
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.018G065200 [exp]	9.38	0.6578
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Potri.010G228700 [exp]	10.67	0.6814
AT5G02270		ABCI20, ATNAP9	ARABIDOPSIS THALIANA NON-INTRI...		Potri.006G086000 [exp]	10.95	0.6941
					Potri.004G236100 [exp]	14.49	0.6786
AT5G54430		ATPHOS32	Adenine nucleotide alpha hydro...		Potri.001G409100 [exp]	20.12	0.6234
AT1G07130		STN1, ATSTN1	Nucleic acid-binding, OB-fold-...		Potri.005G212900 [exp]	24.20	0.6965
AT5G52200		AtI-2	inhibitor-2, phosphoprotein ph...		Potri.012G138600 [exp]	24.67	0.6325

Compare expression of checked genes

Potri.002G105500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.