Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09730 580 / 0 Cysteine proteinases superfamily protein (.1.2) AT4G33620 319 / 7e-95 Cysteine proteinases superfamily protein (.1) AT1G10570 130 / 4e-31 ULP1C, OTS2 UB-LIKE PROTEASE 1C, OVERLY TOLERANT TO SALT 2, Cysteine proteinases superfamily protein (.1.2) AT1G60220 127 / 4e-30 ULP1D, OTS1 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) AT4G15880 76 / 5e-14 ATESD4, ESD4 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) AT3G06910 74 / 3e-13 ULP1A, ELS1, AtULP1a ESD4-LIKE SUMO PROTEASE 1, UB-like protease 1A (.1) AT4G00690 69 / 4e-12 ULP1B UB-like protease 1B (.1) AT3G48480 63 / 2e-10 Cysteine proteinases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G155600 [exp] 1382 / 0 AT1G09730 551 / 0.0 Cysteine proteinases superfamily protein (.1.2) Potri.007G115400 [exp] 429 / 7e-135 AT1G09730 427 / 3e-135 Cysteine proteinases superfamily protein (.1.2) Potri.017G044000 [exp] 422 / 2e-130 AT1G09730 452 / 4e-143 Cysteine proteinases superfamily protein (.1.2) Potri.010G040600 [exp] 140 / 1e-34 AT1G60220 410 / 3e-137 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Potri.010G180300 [exp] 76 / 2e-14 AT3G48480 278 / 3e-93 Cysteine proteinases superfamily protein (.1) Potri.015G090800 [exp] 68 / 5e-12 AT3G48480 228 / 8e-74 Cysteine proteinases superfamily protein (.1) Potri.008G221500 [exp] 62 / 1e-09 AT4G15880 436 / 3e-149 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.010G013700 [exp] 54 / 4e-07 AT4G15880 322 / 8e-104 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Potri.013G002700 [exp] 45 / 0.0001 AT5G60190 176 / 4e-55 Cysteine proteinases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10000917 [exp] 673 / 0 AT1G09730 514 / 1e-169 Cysteine proteinases superfamily protein (.1.2) Lus10020445 [exp] 352 / 1e-106 AT4G33620 404 / 6e-129 Cysteine proteinases superfamily protein (.1) Lus10030867 [exp] 120 / 3e-28 AT1G60220 250 / 2e-76 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10030622 [exp] 117 / 6e-27 AT1G60220 253 / 7e-77 OVERLY TOLERANT TO SALT 1, UB-like protease 1D (.1) Lus10023104 [exp] 68 / 3e-11 AT4G15880 407 / 5e-138 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10002875 [exp] 63 / 1e-09 AT4G15880 404 / 2e-136 EARLY IN SHORT DAYS 4, Cysteine proteinases superfamily protein (.1) Lus10035097 [exp] 52 / 5e-07 AT3G48480 146 / 4e-43 Cysteine proteinases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [poplar] [flax] Peptidase_CA PF02902 [poplar] [flax] Peptidase_C48 Ulp1 protease family, C-terminal catalytic domain
Representative CDS sequence Show only first row Show all	>Potri.002G105700.11 pacid=42779537 polypeptide=Potri.002G105700.11.p locus=Potri.002G105700 ID=Potri.002G105700.11.v4.1 annot-version=v4.1 ATGAAGAACGGACTCGAAGTCTTCGATTTCAAAGAAGAAAACGAGATAGCTGAATTAGCAGCTGGTAAAGTCTTAGTTGCCCAGGAATGTGATGTTCCTG GAAAGGAATCCGGCAGTTTAGTTTGTGTAGATGCTGATGCTATTGGCTGTGATAATGCTGATACTTGTGTTCAGCCCGGAACTGTTAGAGACGACTTAAT CACTGAAGAAGGAAATTCTGGTTCTGATGCTGTTCCCCTACTCACTTCTTTAAGTCATGATCAAGGCTTTTGTTTTCGGGTCGATGATTTTGAGTCGAAA AGGCTTTTCAGTGAAGACGAGAGGATAATTTCATGCCATGAAGCACCTTTGCCTGGGGAAAGCCAATTAAACCGTGGTCATAGAGACTCTCCACCGTCCA GTAGTGAGGCTGATGATGGGCAATTAGATGTTGATGACCACATGGAGGATTGTTCTCCATCAAGCCCCACTCCTGATATTACAGAGGCTAGCGTTATTTT AAATGGCCCCACACCAACCAATTGTTTCAGCTACGCAGAAGTGGGGGGGATTAATCTTCTTGTTGATTATGTTGTATACCGGGGTAAACATTGTTCTGGG TGTGTGATGACGTTTTCTTATGGTGGTGTTAAAATAAATGGTGCAACTGCACATGGAGACGAAGGAACCTTTGGCTTTGAAGCGGGAATTGAAGACATTG TTAGTATTGAGTCTCAGAATCTTCAAAGATTTGGAACTGTAACAATTAAGCTCAACATACTTTCAAAGGATGCAGTACAAGCTGATACCACACATGGCAT GTCAGGTGTGGAGGAGTTGGAGGTTGCAGTTGTTGAGCCAAATTGGTCCAGGAAATGGGAAGAGATTTCATCTTTAAACTTGAAGTACTCAGCTCTACTG AGCGTTATACATGATATGGATAGTGCAATGGATGGAGGAGTGGACTTACTTCAACAGAGGCGTTATTTCCCGAGTTTTGATGTGGAGTTTGAAGATGTTA TCTATCCAAAAGGGGATTCAGATGCAGTTTCCATTAGCAAGAGAGATGTTGATCTATTACAACCAGAGACTTTCATCAATGATACAATTATTGACTTTTA CATTAAGTATTTGAAGAATCAGATTCCTCCTGAGGAAAAGCACAGATACCATTTTTTCAATAGTTTTTTCTTTAGGAAGCTTGCTGATCTAGACAAAGAT CCATCCAGTGTGAAAGATGGCAGAGCTGCTTTTTTACGCGTTCATAAATGGACCAGAAAAGTGGATATATTTGGAAAAGATTACATTTTCATCCCTGTAA ATTTCAATCTTCACTGGAGTTTATTAGTCATATGCCATCCTGGTGAAGTAGCTGGTGTGAAAGATGAAGATACATCAAAATCTGTCATAGTACCATGTAT TTTGCACTTGGATTCTATCAAAGGAACTCATGCAGGTCTCAAAAATCTAGTTCAAAGTTATTTATGGGAAGAGTGGAAAGTGAGGCAGAAGGACACATCA GAAGACATGTCTTCAAAATTCTTGAATTTGCGGTTTGTCCCTCTTGAGCTGCCACAGCAAGAAAATTCATTTGATTGTGGCTTGTTCCTGCTTCACTATC TGGAACTGTTTTTGGTAGAGGCCCCTGTGAATTTTAGCCCATTCAGAATAAACGAGTTCAATAAGTTTCTTAATGGGGACTGGTTTCCTCCTGCTGAAGC TTCTCTCAAGCGTACTCTTATCCAGAGGCTAATTTCGGAGCTTCTTCAAAATCGTTCTCGGGAAGTTTCTTCTGGTGGTTGCAGCAATGAACCTCAGTCT GATTTTTCAGAAATGAATGGGAAAGAATCTGGATTGGGGCTTGTTTCAGAGAGATGCACACCTGCTGGAGCTTGTCATGTTAATTTATCAAGTTCTGATC CTGGCCAGGGCATTGAAATTACTCTATTGGAAGCATCTTCTGTGAGGAATTCTCATTGTGTTGATGATTCTGGCTTAGTTCTCAGGGAATTTTTTGAGCC AGGAGTTGCTGCTGGATCATTACTTACACACTGTCCATCCTTTGACCAGTCATCGTCTTATTACCACCTTAATGATACTATGTCACAGATAGAGCAGGAT GATACAGAAACTGGCGAGCAGTTTGTGTATTTCTCTTCTGGAGAGGCTGTTTTTCAGCAAATTGCAGGAATACCTCCTCAGGATGGTTCTATATCATGTT CTTTTAGAGGCTTTGGGGCTGATGATTCCTGGAATCCAGGGATTTCTTTGCAAGCAGATGACAATGGTTCATCTTCAGAAACATCAGACTGTGCCTCTGA TGATTCAGATGTAGGAATCATTGAAAATTGTCCAGTTAAGGAAGATGTAGGTCTATGTCAGAAAGAGAAATCTGATCAACAAACATCTTCTTTGATGGAA AACATAGAGTGTTTGACAACAAGCCTTGCTGCTGCCTCTAGTGAGATGCTTGAGAATCCTGCCTTTGGAGATATACAAAACCTTGAAGGTAGTGAGGACA CTCACAGGATTGACGATGGCAATGAGAATGTCAGTCTCGCCTCTTGTCAGGGAAATTTCTCAGCACCGCTGCAAGAGGACAACAACTTGGTAGAGAATGT GGCAGAGGTCACTCAGGATGATATGCAAACAATTGAAGGTATACATAACCTTGAAGGTATTGATGACACTGACAGGATTGGTCATGGCAATGAGAACAAC AACTTGGTAGAGAATGTGGCAGAGGTCACTCAGGATGATATGCAAACAATTGAAGGTATACATAACCTTGAAGGTATTGATGACACTGACAGGATTGGTC ATGGCAATGAGAACAACAACTTGGTAGAGAATGTGGCAGAGGTCACTCAGGATGATATGCAAACAATTGAAGGTATACATAACCTTGAAGGTATTGATGA CACTGACAGGATTGGTCATGGCAATGAGAACGGTAACCTTGCCTCGTGTCAGGAAAATTTATCTGCATCATTGCAAGAAGACCATGCTTTGTTAGGGAAT GGATTACATCAAGATTTGCAAAAGACGGAGGCCACAGAGAATGATATGCAAATGTTTGGTGATCATGTGATATTAGTAGAATCAGATGAACAGCAAGCTG CAAAGAGGCCCAGGCTTTTCCCTCCGCATGAAGTTGATGGAGAAATCACCAGAAGCCTGTCAAAGGATCTGAATTTGTAA
AA sequence Show only first row Show all	>Potri.002G105700.11 pacid=42779537 polypeptide=Potri.002G105700.11.p locus=Potri.002G105700 ID=Potri.002G105700.11.v4.1 annot-version=v4.1 MKNGLEVFDFKEENEIAELAAGKVLVAQECDVPGKESGSLVCVDADAIGCDNADTCVQPGTVRDDLITEEGNSGSDAVPLLTSLSHDQGFCFRVDDFESK RLFSEDERIISCHEAPLPGESQLNRGHRDSPPSSSEADDGQLDVDDHMEDCSPSSPTPDITEASVILNGPTPTNCFSYAEVGGINLLVDYVVYRGKHCSG CVMTFSYGGVKINGATAHGDEGTFGFEAGIEDIVSIESQNLQRFGTVTIKLNILSKDAVQADTTHGMSGVEELEVAVVEPNWSRKWEEISSLNLKYSALL SVIHDMDSAMDGGVDLLQQRRYFPSFDVEFEDVIYPKGDSDAVSISKRDVDLLQPETFINDTIIDFYIKYLKNQIPPEEKHRYHFFNSFFFRKLADLDKD PSSVKDGRAAFLRVHKWTRKVDIFGKDYIFIPVNFNLHWSLLVICHPGEVAGVKDEDTSKSVIVPCILHLDSIKGTHAGLKNLVQSYLWEEWKVRQKDTS EDMSSKFLNLRFVPLELPQQENSFDCGLFLLHYLELFLVEAPVNFSPFRINEFNKFLNGDWFPPAEASLKRTLIQRLISELLQNRSREVSSGGCSNEPQS DFSEMNGKESGLGLVSERCTPAGACHVNLSSSDPGQGIEITLLEASSVRNSHCVDDSGLVLREFFEPGVAAGSLLTHCPSFDQSSSYYHLNDTMSQIEQD DTETGEQFVYFSSGEAVFQQIAGIPPQDGSISCSFRGFGADDSWNPGISLQADDNGSSSETSDCASDDSDVGIIENCPVKEDVGLCQKEKSDQQTSSLME NIECLTTSLAAASSEMLENPAFGDIQNLEGSEDTHRIDDGNENVSLASCQGNFSAPLQEDNNLVENVAEVTQDDMQTIEGIHNLEGIDDTDRIGHGNENN NLVENVAEVTQDDMQTIEGIHNLEGIDDTDRIGHGNENNNLVENVAEVTQDDMQTIEGIHNLEGIDDTDRIGHGNENGNLASCQENLSASLQEDHALLGN GLHQDLQKTEATENDMQMFGDHVILVESDEQQAAKRPRLFPPHEVDGEITRSLSKDLNL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09730			Cysteine proteinases superfami...		Potri.002G105700 [exp]	0	1
AT2G15900			Phox-associated domain;Phox-li...		Potri.009G108300 [exp]	2.23	0.8731
AT5G19400		SMG7	Telomerase activating protein ...		Potri.001G275400 [exp]	2.44	0.8329
AT3G13225			WW domain-containing protein (...		Potri.001G371600 [exp]	2.82	0.8376
AT1G63500			Protein kinase protein with te...		Potri.001G104700 [exp]	3.00	0.8436
AT3G19190		ATATG2	autophagy 2 (.1)		Potri.009G102900 [exp]	4.00	0.8647
AT4G32850		PAP(IV), PAP(IV...	poly\(A\) polymerase IV, poly\...		Potri.006G235400 [exp]	7.07	0.8308
AT3G11960			Cleavage and polyadenylation s...		Potri.006G197200 [exp]	8.48	0.8321
AT4G19440			Tetratricopeptide repeat (TPR)...		Potri.003G105700 [exp]	10.90	0.8326
AT3G14470			NB-ARC domain-containing disea...		Potri.001G261300 [exp]	11.83	0.7933
AT2G47410			WD40/YVTN repeat-like-containi...		Potri.014G121100 [exp]	13.41	0.8196

Compare expression of checked genes

Potri.002G105700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.