Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24530 807 / 0 O-fucosyltransferase family protein (.1) AT5G65470 691 / 0 O-fucosyltransferase family protein (.1) AT3G26370 320 / 3e-103 O-fucosyltransferase family protein (.1) AT1G35510 320 / 8e-103 O-fucosyltransferase family protein (.1) AT1G38065 300 / 3e-96 O-fucosyltransferase family protein (.1) AT2G01480 301 / 1e-95 O-fucosyltransferase family protein (.1) AT1G38131 300 / 8e-95 O-fucosyltransferase family protein (.1) AT1G14970 298 / 2e-94 O-fucosyltransferase family protein (.1) AT1G22460 290 / 1e-91 O-fucosyltransferase family protein (.1) AT1G04910 288 / 4e-91 O-fucosyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011000 [exp] 762 / 0 AT5G65470 784 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G185200 [exp] 327 / 7e-106 AT3G26370 905 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G048500 [exp] 320 / 2e-103 AT3G26370 893 / 0.0 O-fucosyltransferase family protein (.1) Potri.019G080900 [exp] 315 / 9e-101 AT1G35510 770 / 0.0 O-fucosyltransferase family protein (.1) Potri.002G087300 [exp] 304 / 2e-96 AT1G38131 704 / 0.0 O-fucosyltransferase family protein (.1) Potri.010G111500 [exp] 300 / 3e-95 AT2G01480 906 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G173500 [exp] 298 / 2e-94 AT1G38131 697 / 0.0 O-fucosyltransferase family protein (.1) Potri.005G161800 [exp] 291 / 2e-92 AT1G22460 678 / 0.0 O-fucosyltransferase family protein (.1) Potri.008G130600 [exp] 292 / 4e-92 AT2G01480 912 / 0.0 O-fucosyltransferase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009276 [exp] 840 / 0 AT4G24530 801 / 0.0 O-fucosyltransferase family protein (.1) Lus10015890 [exp] 818 / 0 AT4G24530 778 / 0.0 O-fucosyltransferase family protein (.1) Lus10002653 [exp] 712 / 0 AT5G65470 760 / 0.0 O-fucosyltransferase family protein (.1) Lus10012732 [exp] 707 / 0 AT5G65470 765 / 0.0 O-fucosyltransferase family protein (.1) Lus10009450 [exp] 326 / 7e-105 AT1G35510 816 / 0.0 O-fucosyltransferase family protein (.1) Lus10028080 [exp] 318 / 1e-103 AT1G38065 636 / 0.0 O-fucosyltransferase family protein (.1) Lus10025631 [exp] 318 / 3e-103 AT1G38065 635 / 0.0 O-fucosyltransferase family protein (.1) Lus10003715 [exp] 301 / 1e-95 AT2G01480 897 / 0.0 O-fucosyltransferase family protein (.1) Lus10036875 [exp] 312 / 1e-94 AT3G26370 935 / 0.0 O-fucosyltransferase family protein (.1) Lus10013460 [exp] 296 / 3e-94 AT2G01480 868 / 0.0 O-fucosyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0113 [poplar] [flax] GT-B PF10250 [poplar] [flax] O-FucT GDP-fucose protein O-fucosyltransferase
Representative CDS sequence Show only first row Show all	>Potri.002G105800.1 pacid=42779442 polypeptide=Potri.002G105800.1.p locus=Potri.002G105800 ID=Potri.002G105800.1.v4.1 annot-version=v4.1 ATGAAGTACCATCACCAGAATCTGTCACAGCGAATGGCTTTTGCTGGGCTTTTCGTCCTTCTTCTACCCATTTTATCTCCTCATCTCTTCAGCCCGTTGA GCCGATCCTATCCTTCTCTCTTCTCCGAGTGGAATGCACCAAAACCCAGGCATTTGCCTCTACTGAAAGCTGCTTTAGATCGCCGTATTCCTGTTAGACA AAAGAATGAGCTGTGGTCTCCTTTGCCTTACCAAGGATGGAAGCCTTGCATTGAACCCACCACGATTCACACGTTGCCAACAAAGTCCCAAGGATATATC CAAGTGTTTCTTGATGGAGGGTTGAACCAACAAAGAATGGGAATATGTGATGCGGTCGCCGTTGCCAAAATACTGAATGCAACACTTGTGATCCCACACC TTGAAGTGAATGCTGTTTGGCAAGATACAAGTTCATTTGCGGATATATTTGATGTGGAACACTTTATTGATACCCTAAGTCATGATGTTGCAATAGTTAA AGAGCCACCCAGTGAGTACTGGTGGAGCACAAGAGAGTATTATGCTACAGGCATACGAGCTATGAGAATCAAAACAGCACCTGTCCATGGTTCAGCTGAC TGGTATCTGGAAAATGTATTGCCTGTGTTGCAGAGTTATGGAATTGCTGCCATTGCCCCATTTTCTCACCGCCTGGCTTTTGACAAATTGCCCCCAAATA TCCAACGCCTACGTTGTAAAGTCAATTTTCACGCACTAACTTTCGTTCCTCATATCAGAGTGCTAGGAGATGCACTCGTAAATCGTCTCCGCCATCCGTT TGAGAAGTTTCATACCTCTGGAACTGGGTTCCTAAAGGAGAGGATGAATGATACCGAATCAGAGGGGTCTGGAAAGTTTGTCGTGTTACATCTTCGCTTT GATAAAGACATGGCTGCTCATTCATCATGTGATTTTGGTGGGGGTAAAGCTGAAAGACTTGCTCTAGCAAAATACCGTCAATTGCTTTGGCAGGGAAGAG TCTTAAACTCTCAGTTCACTGATGAGGCATTGAGAAAACAAGGGCGTTGTCCATTGACTCCTGAAGAGATTGGATTGCTGCTAGCAGCTTTGGGCTTCAG CAATAGCACCCGCCTCTACCTTGCATCACACAAGGTTTATGGTGGAGAAGCAAGGATCTCTGCTTTAAAGAAATTATTCCCCCTTGTGGATCATAAAAAG AGCCTTGCCTCTGCAGAGGAACTGGCAAAGGTTGATGGCAAGGCTTCCTTGTTGGCTGCAGTTGACTATTATGTGAGTTTGCAGAGTGACATCTTTATCT CTGCTTCTCCTGGAAATATGCATAATGCTTTGGTTGGACATAGAGCGTACCTAAACCTGAAGACCATAAGACCAAACATGGTGATGCTGGGCCCGCTTTT CCTGAACAAGAGCATGGAATGGCCAGAATTTCAGTATGCAGTTCTCAGTGGGCATAAAAGTAGACAAGGGCAGATCAGGCTGAGAAAGGAGAGGCAGTCG ATATATACATATCCTATCCCTGACTGCTCGTGTCAGTCGTAA
AA sequence Show only first row Show all	>Potri.002G105800.1 pacid=42779442 polypeptide=Potri.002G105800.1.p locus=Potri.002G105800 ID=Potri.002G105800.1.v4.1 annot-version=v4.1 MKYHHQNLSQRMAFAGLFVLLLPILSPHLFSPLSRSYPSLFSEWNAPKPRHLPLLKAALDRRIPVRQKNELWSPLPYQGWKPCIEPTTIHTLPTKSQGYI QVFLDGGLNQQRMGICDAVAVAKILNATLVIPHLEVNAVWQDTSSFADIFDVEHFIDTLSHDVAIVKEPPSEYWWSTREYYATGIRAMRIKTAPVHGSAD WYLENVLPVLQSYGIAAIAPFSHRLAFDKLPPNIQRLRCKVNFHALTFVPHIRVLGDALVNRLRHPFEKFHTSGTGFLKERMNDTESEGSGKFVVLHLRF DKDMAAHSSCDFGGGKAERLALAKYRQLLWQGRVLNSQFTDEALRKQGRCPLTPEEIGLLLAALGFSNSTRLYLASHKVYGGEARISALKKLFPLVDHKK SLASAEELAKVDGKASLLAAVDYYVSLQSDIFISASPGNMHNALVGHRAYLNLKTIRPNMVMLGPLFLNKSMEWPEFQYAVLSGHKSRQGQIRLRKERQS IYTYPIPDCSCQS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24530			O-fucosyltransferase family pr...		Potri.002G105800 [exp]	0	1
AT2G24640		UBP19	ubiquitin-specific protease 19...		Potri.018G009500 [exp]	3.46	0.8410
AT3G47610			transcription regulators;zinc ...		Potri.012G068900 [exp]	6.48	0.7614
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Potri.017G056201 [exp]	7.74	0.8326
					Potri.008G195401 [exp]	8.24	0.8325
AT1G04900			Protein of unknown function (D...		Potri.001G314700 [exp]	8.66	0.7562
AT3G13730		CYP90D1	"cytochrome P450, family 90, s...		Potri.001G200100 [exp]	10.58	0.8045	CYP90.1
AT2G34580			unknown protein		Potri.004G132600 [exp]	11.53	0.8074
AT2G21540		ATSFH3	SEC14-like 3 (.1.2.3)		Potri.004G157600 [exp]	12.84	0.8312	Pt-SEC14.2
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.015G132500 [exp]	13.41	0.7913
					Potri.008G176201 [exp]	14.89	0.8139

Compare expression of checked genes

Potri.002G105800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.