Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58200 730 / 0 MSL3 MSCS-like 3 (.1.2) AT5G10490 691 / 0 MSL2 MSCS-like 2 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G154000 [exp] 1113 / 0 AT1G58200 734 / 0.0 MSCS-like 3 (.1.2) Potri.007G011100 [exp] 766 / 0 AT5G10490 714 / 0.0 MSCS-like 2 (.1.2.3) Potri.005G107200 [exp] 61 / 1e-11 AT5G10490 77 / 2e-18 MSCS-like 2 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009277 [exp] 766 / 0 AT1G58200 710 / 0.0 MSCS-like 3 (.1.2) Lus10002652 [exp] 709 / 0 AT5G10490 780 / 0.0 MSCS-like 2 (.1.2.3) Lus10012733 [exp] 562 / 0 AT1G58200 630 / 0.0 MSCS-like 3 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00924 [poplar] [flax] MS_channel Mechanosensitive ion channel
Representative CDS sequence Show only first row Show all	>Potri.002G105900.6 pacid=42780135 polypeptide=Potri.002G105900.6.p locus=Potri.002G105900 ID=Potri.002G105900.6.v4.1 annot-version=v4.1 ATGACGAGTGCTAGTTCTATGAAATTGTCTCATGAACTAAGGGTTCACAATTGTCATGGATGCAATAATCAATATACTAGTGCGAGCAGAGTGCAGCTGG TTAATGCCAATCTCTCTTCTCAATTCTTGCGACTGGATCCTTGGGGTCTTCATTTTCTAAACAGCACACGTGGGCCACCGAGTCCTGTACCTTCCAGATG TAATGTGTTCCTCTGCCGATCTGTTCTAACTCCAGGTGGAGGGAATGAGATTCCTGTTCTGAAATCTGCAGCATTGGCCTTTACAAGGTCCTATGATGCT CTTCGTGGAAGTAATCTGGTGCTTAAATTGATCCCAGCTATTGGTATCATTACCTTTGCTGCATGGGGACTTGGCCCACTCATATGGTTGGGAAGGACTA TTTTTCTCCATAAATCTGATAATAGTTGGAAAAAGAGTAGCACACATTATGTTATGACCTCTTATCTTCAACCTTTGCTGCTATGGACTGGAGCAACACT CATCTGCAGAGCATTAGATCCAGTAGTTCTACAATCAGAAGTGAGCCAGGCTGTGAAACAACGACTTCTGAATTTTGTTCGTTCATTATCAACCGTGGTG GCATTTGCCTATTGTTTGTCCAGCTTGATTCAACAGGCACAAAAATTCATCACAGAGACAAATGAATCCAGTGATGCGAGAAATATGGGCTTTAGTTTTG CTGGAAAAGCTGTTTATACTGCAGTCTGGATTGCTGCTGTATCTCTGTTCATGGAATTGCTGGGTTTCTCCACACAAAAGTGGCTCACAGCTGGAGGACT TGGTACAGTGTTGCTCACGCTTGCTGGTCGAGAGATATTTACGAATTTCCTTTCAAGTATAATGATCCATGCTACACGGCCATTTGTTTTGAATGAATGG ATTCAGACAAAAATTGAAGGTTATGAAGTTTCTGGTACTGTTGAGCATGTGGGCTGGTGGTCACCAACAATTATAAGAGGCGATGATCGTGAAGCTGTTC ACATTCCGAACCACAAGTTCAGTGTGAGTATTGTGAGAAATCTTAGCCAGAAGACTCATTGGCGCATCAAGACCCACCTTGCCATCAGTCACTTGGATGT CAAAAAAATTAATAATATTGTAGCTGATATGCGCAAAGTTTTGGCCAAAAATCCGCAAATTGAGCAGCAAAGGTTGCACAGAAGAGTTTTCCTGGATAAT ATCAATCCAGAGAATCAAGCTCTTATGATTTTGGTTTCATGCTTTGTGAAAACCTCACATTTTGAAGAGTACCTGTGCGTAAAGGAAGCAGTCCTCTTGG ATCTTCTTAGAGTTATCAGCCATCATTGTGCTCGGCTTGCCACGCCCATTCGTACAGTACAGAAAATATACAGTGAGGCTGATTTGGAGAATGTGCCATT TTCTGACTCCATTTTCACACGTTCTGGAGCCACTGCTAACCATCCATTATTGCTGATCGAGCCCTCTTATAAAATTAACAGTGAAGATAAAGTTAAAGCT TCAAATCGTTCACTTCGTGCTAATGAGGAAAAAGATGCAAAGGTTGAAGCAGCCCTGGTATCTGAGTTGAAAGCAGATGCCAAGGCTGGATCAATGCCAG TTGTTGATTCAAAACGAGATAAGGTCGTTGCAAAATCTACCTCCAACTCCAGCACAAATTCTAAGGTCTCAGATGTGTCGGCATCTGATCCTCAACTTAT CAGTTCAACGCCTGACAATTCAGTTAAGAACAGTCCTGGAGCACAGCAGTCTAATGGAAATATGGGGGATAGATGGCAGGAGACATTGGGACCGAATTCT GAATGCATAACCTCTAATGGAGCAACGCCTGAGGGGTCCTCAGTTTCTAACACAGAATCTGTCGGTGAAAGAACTGAGAGTCCTGACATTTCACAGAGTA AGCAGGATATTGAGAGATCTGTTGCATCACCATTAATGACCAGACCTTTATTGGAGGAGAACATTGTTCTTGGTGTTGCTTTGGAGGGCTCAAAACGAAC TCTTCCAATTGAGGAAATTGAGGAAGAAATGGATTCATCTCCTTTCCCTTTAGAATCGAAGGAATTGGCTGCCAGCCAGAATGCAGGACAATCTCCTTCT GGCAAGGATAAGAAAGACAGTCGTGACAGTTCCTAG
AA sequence Show only first row Show all	>Potri.002G105900.6 pacid=42780135 polypeptide=Potri.002G105900.6.p locus=Potri.002G105900 ID=Potri.002G105900.6.v4.1 annot-version=v4.1 MTSASSMKLSHELRVHNCHGCNNQYTSASRVQLVNANLSSQFLRLDPWGLHFLNSTRGPPSPVPSRCNVFLCRSVLTPGGGNEIPVLKSAALAFTRSYDA LRGSNLVLKLIPAIGIITFAAWGLGPLIWLGRTIFLHKSDNSWKKSSTHYVMTSYLQPLLLWTGATLICRALDPVVLQSEVSQAVKQRLLNFVRSLSTVV AFAYCLSSLIQQAQKFITETNESSDARNMGFSFAGKAVYTAVWIAAVSLFMELLGFSTQKWLTAGGLGTVLLTLAGREIFTNFLSSIMIHATRPFVLNEW IQTKIEGYEVSGTVEHVGWWSPTIIRGDDREAVHIPNHKFSVSIVRNLSQKTHWRIKTHLAISHLDVKKINNIVADMRKVLAKNPQIEQQRLHRRVFLDN INPENQALMILVSCFVKTSHFEEYLCVKEAVLLDLLRVISHHCARLATPIRTVQKIYSEADLENVPFSDSIFTRSGATANHPLLLIEPSYKINSEDKVKA SNRSLRANEEKDAKVEAALVSELKADAKAGSMPVVDSKRDKVVAKSTSNSSTNSKVSDVSASDPQLISSTPDNSVKNSPGAQQSNGNMGDRWQETLGPNS ECITSNGATPEGSSVSNTESVGERTESPDISQSKQDIERSVASPLMTRPLLEENIVLGVALEGSKRTLPIEEIEEEMDSSPFPLESKELAASQNAGQSPS GKDKKDSRDSS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58200		MSL3	MSCS-like 3 (.1.2)		Potri.002G105900 [exp]	0	1
AT2G37860		LCD1	LOWER CELL DENSITY 1, Protein ...		Potri.016G103100 [exp]	1.41	0.9073
AT5G65380			MATE efflux family protein (.1...		Potri.002G102100 [exp]	2.23	0.9277
AT5G62150			peptidoglycan-binding LysM dom...		Potri.002G152600 [exp]	2.23	0.8784
AT1G62300	WRKY	ATWRKY6, WRKY6	WRKY family transcription fact...		Potri.002G228400 [exp]	11.22	0.8867
AT5G57630		CIPK21, SnRK3.4	SNF1-RELATED PROTEIN KINASE 3....		Potri.018G096042 [exp]	11.31	0.8850
AT2G46680	HD	ATHB7, ATHB-7	ARABIDOPSIS THALIANA HOMEOBOX ...		Potri.014G103000 [exp]	11.95	0.8560	Pt-ATHB.5
AT1G05870			Protein of unknown function (D...		Potri.007G126700 [exp]	12.48	0.7659
AT2G24580			FAD-dependent oxidoreductase f...		Potri.018G008700 [exp]	13.85	0.8760
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G025650 [exp]	14.38	0.8376
AT3G53150		UGT73D1	UDP-glucosyl transferase 73D1 ...		Potri.006G120600 [exp]	20.19	0.8630	GT4.2

Compare expression of checked genes

Potri.002G105900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.