Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60930 182 / 5e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G33300 155 / 4e-42 chromosome-associated kinesin-related (.1) AT5G47820 139 / 8e-35 FRA1 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G50240 123 / 2e-29 KICP-02 ATP binding microtubule motor family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106000 [exp] 202 / 8e-56 AT5G60930 1524 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G150800 [exp] 189 / 2e-51 AT5G60930 1386 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.014G024700 [exp] 152 / 3e-39 AT5G47820 1580 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.002G123500 [exp] 147 / 1e-37 AT5G47820 1639 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.007G046700 [exp] 135 / 2e-33 AT5G47820 1422 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032847 [exp] 261 / 3e-81 AT5G60930 176 / 4e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000762 [exp] 190 / 1e-51 AT5G60930 1498 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10000392 [exp] 186 / 2e-50 AT5G60930 1483 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10018731 [exp] 145 / 1e-36 AT5G47820 1600 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10024805 [exp] 144 / 2e-36 AT5G47820 1599 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10010047 [exp] 141 / 2e-35 AT5G47820 1569 / 0.0 FRAGILE FIBER 1, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G106100.2 pacid=42778328 polypeptide=Potri.002G106100.2.p locus=Potri.002G106100 ID=Potri.002G106100.2.v4.1 annot-version=v4.1 ATGAAGAAGGGAAATCGCAGATCGAAGCGATCAAGCATTGCCGATTCCTCTTCTCCATCTAAAGACGAAAGTGACCAACCACAACAGAACCAGGATTGCG ACAAGAGAGTTCACGACTTGGAGAAAGAAAACGAAGCTCTTAAGAGGGAGATTGAGGAATTGAAGGAAAAAGATGGTGCTAAAATTTCGTCACCGATTTC CGTTGGTGGCAGTGTTGGAAAAAGGAAACAAGATGACATCCAGAAGTTACGAAACCTTGAAGAACAGGTCATGGAATTGAAGAAGAAACTAAATGCACAT TCTCAGTTATCAAAGCTAAAACAAAAGAATGGTGAATCAGGGAGACCGGATGAGATTCAGAGATTAAAGGCTCAGAAGGTTCAACTCCTATGTAAGATGA AGTTAGACTCCGTGCAATTCAGGCTATCAAAAGCTTCACTGGAAAGAGAAGTTCTTCAGATGAAGAAAGAGCAAAGAAGGAACCAGTACGAAATGCGTAA GCTGTTGGCTTTGAACCAGAGACAAAAGCTGGTATTGCAACGAAAGACAGAGGAAGCTTCAATGGCAGCTAAACGGCTGAAGGGTCTATTAGAATCTCGA AAGGCTTTGTCTCAAAAAAATTCTGGCGTTAAAGCTGGCAACAATGCAGGAAGCCAGGGTATTGAGCTTGAGCTTAAAGTTGCGGCACGGGTGGAGGAAA TACGTTCTGAATATGAACGTCAAATGGAAGAGATGGATTATGAGGTCAGAAAGTTTGAGGAAGAAGCAGAGAAGCTAAGGCTTGAAAATTTCAGGTGCCT GTTGCAGGATAAGGAAGTTGAATGCACAGTGAGGGATAGCGAGTTAAGGGACTTGAAAGAAGAAGTTACCAGGTTAAGTAGTTTGGTCAGTCGACTGGGA ATGGCCAAGGCACAAGTTAATTCAAGGAACCCACAGGTAGGTGTGGTTCAGTCCTCTTTTTCAGTCGGAAGTAGTATTGAGCTATTAGGAACGGATACAT ATGAATCAGAAGGTTCAGGAGGAAATACTGCTGTCATGGGGAAATCTGCATCAGGTGTTTGCTGCTCGTGCAGCAAGAAATCCCTCTGCAAGACAACAAA ATGTGAATGTCGGGCTGCTGGAGGAAGCTGTGGGACATGTTGTGGGTGTGCAGCATTGAAGTGCACCAATAGAAAAGTCTCAATCAAGGCGGATGACTCC CAGCAATCAGAGGTAGCTCAAAAGTTGCACGTATCCAGTTCATCCGAGACAGGAAAAGATGTTATCATGTCTCAATCTACTGACTTGAATAATGATCTTC AACCTCTAAGGAAACCTTTGCATGAAATTGGGAATGCGCGGATGAATTCAAGCCCTATAAAACCTGTCAAGAAAACAAGAAAGCAGAAATCAGCCCTGCA GCTCGACACCACTTCTCAATCTTGCTCGCTGCCAGAAAATGCTGAAGGCCCGAGGAAAATGGAAAAATTTGCCCTAGCAGATATCCCTTTGAAGTTAACA AGAGGGGCAAAGCGGTCAGCAGCCAGATGA
AA sequence Show only first row Show all	>Potri.002G106100.2 pacid=42778328 polypeptide=Potri.002G106100.2.p locus=Potri.002G106100 ID=Potri.002G106100.2.v4.1 annot-version=v4.1 MKKGNRRSKRSSIADSSSPSKDESDQPQQNQDCDKRVHDLEKENEALKREIEELKEKDGAKISSPISVGGSVGKRKQDDIQKLRNLEEQVMELKKKLNAH SQLSKLKQKNGESGRPDEIQRLKAQKVQLLCKMKLDSVQFRLSKASLEREVLQMKKEQRRNQYEMRKLLALNQRQKLVLQRKTEEASMAAKRLKGLLESR KALSQKNSGVKAGNNAGSQGIELELKVAARVEEIRSEYERQMEEMDYEVRKFEEEAEKLRLENFRCLLQDKEVECTVRDSELRDLKEEVTRLSSLVSRLG MAKAQVNSRNPQVGVVQSSFSVGSSIELLGTDTYESEGSGGNTAVMGKSASGVCCSCSKKSLCKTTKCECRAAGGSCGTCCGCAALKCTNRKVSIKADDS QQSEVAQKLHVSSSSETGKDVIMSQSTDLNNDLQPLRKPLHEIGNARMNSSPIKPVKKTRKQKSALQLDTTSQSCSLPENAEGPRKMEKFALADIPLKLT RGAKRSAAR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G60930			P-loop containing nucleoside t...		Potri.002G106100 [exp]	0	1
					Potri.001G407200 [exp]	3.87	0.9708
AT5G04320			Shugoshin C terminus (.1.2)		Potri.009G006100 [exp]	3.87	0.9727
AT3G19184	B3		AP2/B3-like transcriptional fa...		Potri.009G103200 [exp]	4.89	0.9695
AT3G10310			P-loop nucleoside triphosphate...		Potri.006G048600 [exp]	4.89	0.9706
AT1G18370		HIK, ATNACK1	HINKEL, ARABIDOPSIS NPK1-ACTIV...		Potri.015G044600 [exp]	5.65	0.9727	HIK.3
AT2G32590		EMB2795	EMBRYO DEFECTIVE 2795, unknown...		Potri.014G155900 [exp]	6.32	0.9647
AT5G01910			unknown protein		Potri.016G138300 [exp]	6.70	0.9653
AT5G27550			P-loop containing nucleoside t...		Potri.013G020700 [exp]	7.07	0.9696
AT1G72250			Di-glucose binding protein wit...		Potri.011G140000 [exp]	8.12	0.9644
AT5G65120			unknown protein		Potri.007G090500 [exp]	8.12	0.9507

Compare expression of checked genes

Potri.002G106100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.