Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G10920 787 / 0 L-Aspartase-like family protein (.1) AT5G50950 50 / 2e-06 FUM2 FUMARASE 2 (.1.2.3) AT2G47510 47 / 4e-05 FUM1 fumarase 1 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G201300 [exp] 47 / 3e-05 AT2G47510 877 / 0.0 fumarase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002606 [exp] 822 / 0 AT5G10920 769 / 0.0 L-Aspartase-like family protein (.1) Lus10032846 [exp] 805 / 0 AT5G10920 753 / 0.0 L-Aspartase-like family protein (.1) Lus10032296 [exp] 47 / 5e-05 AT5G50950 849 / 0.0 FUMARASE 2 (.1.2.3) Lus10009114 [exp] 45 / 0.0002 AT2G47510 882 / 0.0 fumarase 1 (.1.2) Lus10028532 [exp] 45 / 0.0002 AT2G47510 881 / 0.0 fumarase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00206 [poplar] [flax] Lyase_1 Lyase PF14698 [poplar] [flax] ASL_C2 Argininosuccinate lyase C-terminal
Representative CDS sequence Show only first row Show all	>Potri.002G106200.1 pacid=42778396 polypeptide=Potri.002G106200.1.p locus=Potri.002G106200 ID=Potri.002G106200.1.v4.1 annot-version=v4.1 ATGGAATCACAACTACTCTCCACTTCACCATCTACTTTCCACTTCCCCTCACCAAAGACCCTCTTCTCCAACAAAACCACACACAGAAACCCAAACTTTT CTTCCCTTGCGCCCAAAAGAAAACTAGCGATCCAGGCTAAACTCATGGAGAAAGAGAACAAGTTGTGGGGAGGTAGATTCGAACAGACCGTGACTGATAA AGTAGAGAAATTCACCGAGTCAATCTCGTTTGACAAGGAGTTGTACAAGCATGACATTATGGGCAGCAAAGCTCATGCCTCCATGCTTGCAAAACAGGGG TTGATGAGCGAGAGTGATAAAGACAGTATTTTGAAAGGGCTCGATGAGATACAACGAAAGATTGAGGCTGGTGAGTTTGAGTGGAGGGAAGACAGGGAAG ATGTGCATATGAATATTGAGGCAACGCTTACTGAGATGATTGGTGAACCTGCCAAGAAACTGCATACAGCGAGGAGTAGGAATGATCAAGTTTTGACTGA TTTTAAACTGTGGTGTCGTGATGCTATTGATAGAATCGCTGCATCTATAAAACATTTACAGGTTGCATTGGTGAAATTGGCTTTGAATAATGAAGGGCTC ATTGTTCCTGGTTACACACATTTGCAAAGAGCGCAGCCTGTTTTGTTGCCGCATCTGCTCTTAGCCTATGTCGAACAGCTTGAACGTGATGCTGGTCGCT TGCTTGATTGTAAACTTAGGATGAACTTCTGCCCCCTGGGTGCATGTGCATTGGCTGGCACCGGTTTACCAATCGATAGGTTTATGACTTCTGAAGCTTT AGGATTCACTGCTCCCATGAGGAATAGCATTGATGCAGTTTCAGACCGAGATTTTGTCATGGAGTTTCTTTCTGCTAATTCCATCACAGCAATTCATCTT TCTCGATTGGGTGAAGAATGGGTGTTGTGGGCCTCGGAGGAGTTTGGATTTTTAACACCAAGTGATTCTGTTTCAACTGGAAGTAGTATTATGCCTCAAA AGAAAAACCCAGATCCCATGGAACTTGTCCGAGGAAAATCTGCTAGGGTCATAGGAGACCTGGTCACTCTTCTCACATTGTGCAAAGGGCTTCCACTCGC TTATAATCGTGATTTGCAGGAAGACAAGGAACCTGTATTTGACAGTGTTAAGACAGTTGTAGGGATGCTCGATGTGTCAGCAGAGTTTGCGCAGAACATC ACTTTTAATAAGGAGAGAATTCAAAAGTCTCTGCCAGCCGGCCATCTTGATGCCACAACACTTGCTGATTATCTTGTCAATAAGGGACTGCCTTTCAGAA CAGCCCATGAAATAGTTGGAACATGTGTTCATTTATGTGTTTCAAGGAACTTGCGGCTTGAAGATCTAACTCTTGATGATCTGAAACGTATAAACCCCGC CTTTCACCAAGATGTATACGAGTATCTTGGAGTAGAAAATGCAGTTAATAAATTCTGCTCATATGGTTCCACCGGGTCAGCTTGCGTTGCAAGTCAGCTA GATTATTGGGTTACTAAACTCGAGATTAGCAAAATCTGA
AA sequence Show only first row Show all	>Potri.002G106200.1 pacid=42778396 polypeptide=Potri.002G106200.1.p locus=Potri.002G106200 ID=Potri.002G106200.1.v4.1 annot-version=v4.1 MESQLLSTSPSTFHFPSPKTLFSNKTTHRNPNFSSLAPKRKLAIQAKLMEKENKLWGGRFEQTVTDKVEKFTESISFDKELYKHDIMGSKAHASMLAKQG LMSESDKDSILKGLDEIQRKIEAGEFEWREDREDVHMNIEATLTEMIGEPAKKLHTARSRNDQVLTDFKLWCRDAIDRIAASIKHLQVALVKLALNNEGL IVPGYTHLQRAQPVLLPHLLLAYVEQLERDAGRLLDCKLRMNFCPLGACALAGTGLPIDRFMTSEALGFTAPMRNSIDAVSDRDFVMEFLSANSITAIHL SRLGEEWVLWASEEFGFLTPSDSVSTGSSIMPQKKNPDPMELVRGKSARVIGDLVTLLTLCKGLPLAYNRDLQEDKEPVFDSVKTVVGMLDVSAEFAQNI TFNKERIQKSLPAGHLDATTLADYLVNKGLPFRTAHEIVGTCVHLCVSRNLRLEDLTLDDLKRINPAFHQDVYEYLGVENAVNKFCSYGSTGSACVASQL DYWVTKLEISKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G10920			L-Aspartase-like family protei...		Potri.002G106200 [exp]	0	1
AT3G13700			RNA-binding (RRM/RBD/RNP motif...		Potri.003G035000 [exp]	5.00	0.8182
AT1G61010		CPSF73-I	cleavage and polyadenylation s...		Potri.017G076000 [exp]	8.94	0.8249
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.011G032400 [exp]	10.48	0.8337
AT3G55510		RBL	REBELOTE, Noc2p family (.1)		Potri.008G043400 [exp]	10.81	0.8493
AT5G46100			Pentatricopeptide repeat (PPR)...		Potri.011G057900 [exp]	11.13	0.8607
AT4G39740		HCC2	homologue of copper chaperone ...		Potri.005G076700 [exp]	12.72	0.7947
AT2G15630			Pentatricopeptide repeat (PPR)...		Potri.004G147700 [exp]	17.54	0.8525
AT1G53330			Pentatricopeptide repeat (PPR)...		Potri.011G108500 [exp]	20.49	0.8412
AT3G10530			Transducin/WD40 repeat-like su...		Potri.008G029100 [exp]	22.64	0.8371
AT1G63780		IMP4	Ribosomal RNA processing Brix ...		Potri.003G201100 [exp]	24.04	0.8285	Pt-IMP4.2

Compare expression of checked genes

Potri.002G106200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.