Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58210 702 / 0 EMB1674 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) AT1G09720 651 / 0 Kinase interacting (KIP1-like) family protein (.1) AT2G22560 407 / 2e-126 Kinase interacting (KIP1-like) family protein (.1) AT5G10500 344 / 4e-104 Kinase interacting (KIP1-like) family protein (.1) AT3G22790 121 / 1e-27 Kinase interacting (KIP1-like) family protein (.1) AT1G03080 120 / 2e-27 kinase interacting (KIP1-like) family protein (.1) AT4G14760 120 / 3e-27 kinase interacting (KIP1-like) family protein (.1) AT4G02710 119 / 3e-27 Kinase interacting (KIP1-like) family protein (.1) AT2G30500 98 / 4e-21 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) AT2G47920 93 / 7e-21 Kinase interacting (KIP1-like) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011300 [exp] 414 / 1e-128 AT2G22560 851 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.005G147300 [exp] 223 / 4e-60 AT2G22560 421 / 2e-131 Kinase interacting (KIP1-like) family protein (.1) Potri.008G156250 [exp] 132 / 7e-32 AT3G22790 519 / 7e-168 Kinase interacting (KIP1-like) family protein (.1) Potri.010G083300 [exp] 131 / 1e-30 AT3G22790 1306 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Potri.002G049600 [exp] 128 / 8e-30 AT1G03080 1229 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.005G213400 [exp] 125 / 1e-28 AT1G03080 1399 / 0.0 kinase interacting (KIP1-like) family protein (.1) Potri.019G131000 [exp] 107 / 9e-24 AT2G30500 389 / 4e-129 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.013G158100 [exp] 106 / 2e-23 AT2G30500 384 / 7e-127 Kinase interacting (KIP1-like) family protein (.1), Kinase interacting (KIP1-like) family protein (.2) Potri.002G207700 [exp] 96 / 2e-20 AT2G47920 136 / 2e-37 Kinase interacting (KIP1-like) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032844 [exp] 367 / 2e-113 AT1G58210 280 / 4e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10001866 [exp] 365 / 1e-112 AT1G58210 281 / 1e-80 EMBRYO DEFECTIVE 1674, kinase interacting family protein (.1) Lus10025717 [exp] 372 / 3e-111 AT2G22560 497 / 6e-158 Kinase interacting (KIP1-like) family protein (.1) Lus10002655 [exp] 368 / 5e-110 AT2G22560 511 / 9e-164 Kinase interacting (KIP1-like) family protein (.1) Lus10012730 [exp] 332 / 2e-97 AT2G22560 430 / 9e-134 Kinase interacting (KIP1-like) family protein (.1) Lus10035944 [exp] 223 / 5e-60 AT5G10500 280 / 3e-78 Kinase interacting (KIP1-like) family protein (.1) Lus10039359 [exp] 127 / 2e-29 AT3G22790 1402 / 0.0 Kinase interacting (KIP1-like) family protein (.1) Lus10006896 [exp] 119 / 7e-27 AT1G03080 927 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10014687 [exp] 119 / 7e-27 AT1G03080 938 / 0.0 kinase interacting (KIP1-like) family protein (.1) Lus10042627 [exp] 108 / 1e-23 AT4G02710 624 / 0.0 Kinase interacting (KIP1-like) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07765 [poplar] [flax] KIP1 KIP1-like protein
Representative CDS sequence Show only first row Show all	>Potri.002G106400.1 pacid=42779979 polypeptide=Potri.002G106400.1.p locus=Potri.002G106400 ID=Potri.002G106400.1.v4.1 annot-version=v4.1 ATGCTGCAGAGAGCAGCAAGCAATGCATATTCATGGTGGTGGGCAAGCCACATCAGGACAAAACATTCAAAATGGCTGGAAGAAAACCTCCAAGATATGG AGGAAAAGGTTAATAACATGCTCAAAATCATTGAAAATTCGGGGGACACCTTCGCTCAAAGAGCTGAGATGTACTACAGAAGGAGGCCAGAACTTATAAA CCATGTGGAAGACTCTTACCGGGCATATCGAGCATTGGCAGAGAGATTCGATCATCTGTCAAAAGAGCTGCAAAGTGCCAACCGCACCATTGCCACTGTC TTCCCAGAACAAGTTCAGTTTGCCATGGATGATGATGATTTTGAAGAAAGTGACCCCACAATATTCGAATCTGATGATCCCAACGAAGCACACAAGGTCT CTAAAGCAAATATTCCAAAGGTACCCAGCATGCCAAAGAAAGATTTCAGAAACCAAACAATGTTATTGTCCAGAAAGGGACAGCAGCTAAATAGAACTGC TAGCTCTGCTAAAGCCAATGTGCCTCCAAGTTCAGGCCTTAGCCGAGAAGAGGCTGCAGAGAAAACTGATAAGCTTCAGAAAGAAATTTTGGCACTACAA ACGGAGAAGGAGTTTGTACAAAGCGTATCTGAACGATGCCAAGCTAAGTGCGGGGGAATTGAAAATCAGATAACTGAAATGCAAGTGACAATCAGCGGCT TACAAGATGAGTTCGGTATCAGCAATGTTATTGATGATAATGAAGCCCGAACTTTGATGGCTGCCACTGCTCTAAAATCATGCAAGGATACTTTGGTTAA GTTGCAAGAGAAACGGGAGCTATCAGCTGAAGAGGCTAAGGTAGAGAACCGAAGGATTAAGGAAGTCCAGCAGAAGTACGTAGCCCTTAAAGGTGAGTTT CTTTCTGACCAATCAGATCTGCTGGAGCCTGCTGATGAACAGGAGGCTGAATCAGAAGATATAGATCCAAATGATACGAATTTGTTGCGAGAGAAGATTA AAGGTGAGCTGGAAGCAGATTTAAAATCATCCCACACCGTGATGCAACTGGCCGAGAGAATTGATGAACTAGTTGAGAAGGTTGTGAATTTGGAAACTGC AGTCTCTTCTCAAGATGCTCTGGTAAACAGACTAAAATCTGATTCAGATGGGCTCCAGACACACATCAAGACTCTAGAAGAGGATAAGGCGACTCTGATG GAAAATTCAGAGAAAATGAGCAACAAGCTAAGAGAGTTGGAAGAGGAGTTTCGTAGAGTGAAATGCCTCAACGAAAACATCAAAGATCAAAACAAAAACC TTCTAACACGTTTAACTGAAGCAAGTTGTGCCATTGATCATTTGTCAGTGAAGTTACAAACAGTGAAACCAGACAAGGAAGTTGAGAAAGAAGAATCAAT CCAAGAATCAGGAGCTGCTGTTGATGTCAAAGCAGGCAGGGGGGTCGAAGAACAAGAAGAACATCTGGCTTCTTTCAATGATGCATTTGTATCGAAGGCC ATGGAAATGGAAAAGGAAGGGAGGAAAGATGATGTTCCTGCTGTCAATAGTTCTATCAAAGCAGAGGAATCTGGACCAAACCAAAAGCTCACTGCCATAA CTGATGATCATGTCCCAACACATGATCAGCGAGATTTGCATGAGGAAGAAAATGATCTTGCTGCTCGGCTAGAGGAACTGGGAATAGATGAAGAGGATCA ACCCAACTGGAGGCAGTTGTTGGCGAGTGGGTCAGATGACAGGGAAAAGCTTCTGCTGGAAGAGTATACTTTGGTCCTCCGGAATTATACTGAAGTAAGA AAGAAGCTCGGTGACGTTGAGAAGAAAAATCGGGACGGTTTCTTTGAATTGGCATTGCAGATTAGGGAATTAAAGAATGCTCTTGCCCTGAGGGATGAAG AGATCCAATCTTTGCGTGAAATGAGCTCTCACCAACAAAATCTCAATGAAAATAATGATGGTGATTCGACAAAATATAAGTACTCACATGCAGAAGGTTC TCCCGACCTTATGACACAAGCAGCTAGCTTCCTGGATTCAAATCTTTCATCTCTAAGTTCACCTCCGCGGCCAGTTTTTGACTCAGAGCACGAACATCAT GTAGAAGCCAGAGGAAGAATTGGTGAATTAGCTGTATCTGGAGGTAATAGAAGGTACTCTGCGAAAGAGGTTAGCAATGTGATCAAGATGAAACGTGCAG ATTCACCCCATGTTCCTTCAGCTGTAGAAGAAAAGATCCGTTCAGATATTGATGGACTGCTGGAGGAAAATCTGGAGTTCTGGTTGAGGTTTAGCACCAC GTTGCATCAGATACGAAAGTTTCAAACTTCAGTCCATGACTTAAAGGTGGAGCTATCAAAAGTAAGAGATAAAACAAGGCGAGAAGGAAATGATAAGAGT CAATATATCATCTCAGAGACTCGGCCAATATTCACACATTTGAGAGAAATACAAACTGAACTAACATTATGGCTGGAGAACAATTCGGTAATGAAAGATG AAATTCATGCTAGATATGCATCTTTATGCAATATTCAAGATGAGCTGTTGAGAGTTTCCAATCCACGTTCCAAAGAAGAAGAGGCTGAGCTAAGTGAATA TCAAGCAGCTAAGTTTCAAGGTGAGATTCTCAACATGAAACAGGAAAGCAACAAGGTTGCAGATGAGCTGCAAACCGGTCTGGATCGTGTGAGAGGACTC AAGGTTGAAGTTGAAAGGTTACTCACAAAACTGGACGAGGAGCTCGGGATTTCAGCATCTAAAAATAGGAGTTCATCACACAAAGCTAGAATCCCCTTGC GCTCTTTCTTGTTTGGTGTCAAATTAAAGAAACTTAAGGGACAAAAGCAGTCAATCTTCTCATGCGCAAGCCCTGCACTGCAGAAACAATATAGTATGTT CGAGGATGGAAAACCCCCACAACACCACTGA
AA sequence Show only first row Show all	>Potri.002G106400.1 pacid=42779979 polypeptide=Potri.002G106400.1.p locus=Potri.002G106400 ID=Potri.002G106400.1.v4.1 annot-version=v4.1 MLQRAASNAYSWWWASHIRTKHSKWLEENLQDMEEKVNNMLKIIENSGDTFAQRAEMYYRRRPELINHVEDSYRAYRALAERFDHLSKELQSANRTIATV FPEQVQFAMDDDDFEESDPTIFESDDPNEAHKVSKANIPKVPSMPKKDFRNQTMLLSRKGQQLNRTASSAKANVPPSSGLSREEAAEKTDKLQKEILALQ TEKEFVQSVSERCQAKCGGIENQITEMQVTISGLQDEFGISNVIDDNEARTLMAATALKSCKDTLVKLQEKRELSAEEAKVENRRIKEVQQKYVALKGEF LSDQSDLLEPADEQEAESEDIDPNDTNLLREKIKGELEADLKSSHTVMQLAERIDELVEKVVNLETAVSSQDALVNRLKSDSDGLQTHIKTLEEDKATLM ENSEKMSNKLRELEEEFRRVKCLNENIKDQNKNLLTRLTEASCAIDHLSVKLQTVKPDKEVEKEESIQESGAAVDVKAGRGVEEQEEHLASFNDAFVSKA MEMEKEGRKDDVPAVNSSIKAEESGPNQKLTAITDDHVPTHDQRDLHEEENDLAARLEELGIDEEDQPNWRQLLASGSDDREKLLLEEYTLVLRNYTEVR KKLGDVEKKNRDGFFELALQIRELKNALALRDEEIQSLREMSSHQQNLNENNDGDSTKYKYSHAEGSPDLMTQAASFLDSNLSSLSSPPRPVFDSEHEHH VEARGRIGELAVSGGNRRYSAKEVSNVIKMKRADSPHVPSAVEEKIRSDIDGLLEENLEFWLRFSTTLHQIRKFQTSVHDLKVELSKVRDKTRREGNDKS QYIISETRPIFTHLREIQTELTLWLENNSVMKDEIHARYASLCNIQDELLRVSNPRSKEEEAELSEYQAAKFQGEILNMKQESNKVADELQTGLDRVRGL KVEVERLLTKLDEELGISASKNRSSSHKARIPLRSFLFGVKLKKLKGQKQSIFSCASPALQKQYSMFEDGKPPQHH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Potri.002G106400 [exp]	0	1
AT3G22104			Phototropic-responsive NPH3 fa...		Potri.007G118800 [exp]	4.00	0.8341
					Potri.003G015433 [exp]	5.47	0.7783
AT4G27870			Vacuolar iron transporter (VIT...		Potri.012G004000 [exp]	7.07	0.7923
AT1G27340			Galactose oxidase/kelch repeat...		Potri.003G062000 [exp]	11.48	0.7647
AT5G50350			unknown protein		Potri.015G091500 [exp]	11.61	0.7958
AT3G15730		PLDALPHA1	phospholipase D alpha 1 (.1)		Potri.003G032800 [exp]	18.60	0.7999	Pt-PLD1.1
AT5G06300		LOG7	LONELY GUY 7, Putative lysine ...		Potri.005G237600 [exp]	21.00	0.7697
AT1G54330	NAC	ANAC020	NAC domain containing protein ...		Potri.008G081500 [exp]	21.90	0.7679
AT3G15030	TCP	TCP4, MEE35	maternal effect embryo arrest ...		Potri.011G096600 [exp]	33.76	0.7443	Pt-TCP1.1
AT4G39400		DWF2, CBB2, BIN...	DWARF 2, CABBAGE 2, BRASSINOST...		Potri.007G078100 [exp]	36.76	0.7733	Pt-BRI1.2

Compare expression of checked genes

Potri.002G106400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.