Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24520 457 / 1e-158 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) AT4G30210 420 / 1e-143 AR2, ATR2 P450 reductase 2 (.1.2) AT3G02280 160 / 8e-45 Flavodoxin family protein (.1) AT1G30510 70 / 1e-13 ATRFNR2 root FNR 2 (.1.2.3) AT1G20020 70 / 2e-13 ATLFNR2 ferredoxin-NADP\(+\)-oxidoreductase 2, LEAF FNR 2, ferredoxin-NADP(+)-oxidoreductase 2 (.1), ferredoxin-NADP(+)-oxidoreductase 2 (.2), ferredoxin-NADP(+)-oxidoreductase 2 (.3) AT4G05390 65 / 7e-12 ATRFNR1 root FNR 1 (.1.2) AT5G66190 62 / 4e-11 ATLFNR1 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153800 [exp] 495 / 3e-173 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Potri.006G167200 [exp] 440 / 2e-151 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2) Potri.018G092100 [exp] 436 / 6e-150 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2) Potri.004G101100 [exp] 154 / 1e-42 AT3G02280 811 / 0.0 Flavodoxin family protein (.1) Potri.005G112900 [exp] 66 / 3e-12 AT5G66190 576 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.001G371900 [exp] 66 / 5e-12 AT4G05390 635 / 0.0 root FNR 1 (.1.2) Potri.007G057200 [exp] 64 / 3e-11 AT5G66190 592 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2) Potri.011G027100 [exp] 56 / 7e-10 AT3G02280 144 / 2e-41 Flavodoxin family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025485 [exp] 414 / 5e-145 AT4G30210 681 / 0.0 P450 reductase 2 (.1.2) Lus10019996 [exp] 415 / 9e-142 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2) Lus10015525 [exp] 411 / 3e-140 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2) Lus10006972 [exp] 396 / 2e-134 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2) Lus10002416 [exp] 316 / 3e-108 AT4G24520 474 / 1e-164 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10032842 [exp] 318 / 2e-104 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2) Lus10017589 [exp] 155 / 5e-43 AT3G02280 810 / 0.0 Flavodoxin family protein (.1) Lus10033550 [exp] 67 / 1e-13 AT3G02280 121 / 7e-33 Flavodoxin family protein (.1) Lus10038538 [exp] 66 / 4e-12 AT4G05390 624 / 0.0 root FNR 1 (.1.2) Lus10041904 [exp] 63 / 5e-11 AT5G66190 595 / 0.0 ferredoxin-NADP\(+\)-oxidoreductase 1, LEAF FNR 1, ferredoxin-NADP(+)-oxidoreductase 1 (.1), ferredoxin-NADP(+)-oxidoreductase 1 (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0091 [poplar] [flax] NAD_Ferredoxin PF00175 [poplar] [flax] NAD_binding_1 Oxidoreductase NAD-binding domain CL0076 [poplar] [flax] FAD_Lum_binding PF00667 [poplar] [flax] FAD_binding_1 FAD binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G106566.1 pacid=42778060 polypeptide=Potri.002G106566.1.p locus=Potri.002G106566 ID=Potri.002G106566.1.v4.1 annot-version=v4.1 ATGCCAGGGAACCTAGTGAGGCAGAGAGACTCAGGTTTTTATCATCACAGCAAGGATGAGTACTCTCAATGGGTTATGGCTAGTCAGAGAAGTCTTCTTG AGGTAATGGCTGAGTTCCCATCTGCCAAACCTCCCCTTGGTATCTTTTTTGCTGCAGTGGCTCCTCGCCTACAGCCTCGTTACTATTCTATCTCATCCTC TCCTAGATATGCTCCCAATAGAGTGCATGTGACCTGTGCTTTAGTATATGGTCCCAGTCCCACTGGTAGAATTCACAAAGGGGTGTGTTCAACTTGGATG AAGAATGCAGTTCCTCTAGAGAAAAGGCATGACTGTAGTTGGGCTTCCATTTTCATCAGAACATCAAATTTCAAGTTACCAGCCAATCCTTCAACTCCAA TTATTATGGTGGGACCTGGTACTGGACTGGCACCTTTCAGAGGATTTCTACAGGAAAGAATGGCCCTGAAAGAGGATGGTACACAGCTTGGTCCAGCCCT GCTTTTCTTTGGATGCAGAAATCGCCAAATGGATTTCATATATGAGGATGAGCTCAATAATTTTGTGGCGCAAGGTGTGATATCCGAGTTATTAGTTGCA TTCTCAAGGGAGGGGCCACAGAAGGAATATGTTCAACATAAGATGGTAGATAAAGCAGCAGAGATATGGAGTATAATTTCTCAAGGGGGTTATCTTTATG TGTGTGGTGATGCCAAGGGTATGGCTAGAGATGTTCATCGGACTTTGCACACTATTGTACAAGAGCAGGGAGGCTTGGACTCATCGAAAACCGAGTCTAT GGTGAAGAAACTCCAAATGGAAGGCCGGTATCTAAGAGATGTCTGGTGA
AA sequence Show only first row Show all	>Potri.002G106566.1 pacid=42778060 polypeptide=Potri.002G106566.1.p locus=Potri.002G106566 ID=Potri.002G106566.1.v4.1 annot-version=v4.1 MPGNLVRQRDSGFYHHSKDEYSQWVMASQRSLLEVMAEFPSAKPPLGIFFAAVAPRLQPRYYSISSSPRYAPNRVHVTCALVYGPSPTGRIHKGVCSTWM KNAVPLEKRHDCSWASIFIRTSNFKLPANPSTPIIMVGPGTGLAPFRGFLQERMALKEDGTQLGPALLFFGCRNRQMDFIYEDELNNFVAQGVISELLVA FSREGPQKEYVQHKMVDKAAEIWSIISQGGYLYVCGDAKGMARDVHRTLHTIVQEQGGLDSSKTESMVKKLQMEGRYLRDVW

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24520		AR1, ATR1	ARABIDOPSIS CYTOCHROME REDUCTA...		Potri.002G106566 [exp]	0	1
AT1G54850			HSP20-like chaperones superfam...		Potri.013G024900 [exp]	1.73	0.9322
					Potri.008G089401 [exp]	2.44	0.9423
AT1G15780			unknown protein		Potri.003G028401 [exp]	2.44	0.9200
AT2G03380			Pentatricopeptide repeat (PPR)...		Potri.008G092900 [exp]	3.16	0.9239
AT2G01570	GRAS	RGA1	REPRESSOR OF GA1-3 1, REPRESSO...		Potri.017G018801 [exp]	6.32	0.9247
AT5G21930		ATHMA8, HMA8, P...	ARABIDOPSIS HEAVY METAL ATPASE...		Potri.006G220150 [exp]	6.48	0.9185
AT5G04000			unknown protein		Potri.016G044001 [exp]	6.70	0.9139
AT3G03220		ATHEXPALPHA1.22...	EXPANSIN 13, expansin A13 (.1)		Potri.004G080200 [exp]	7.93	0.8604
					Potri.004G093250 [exp]	8.71	0.9022
AT1G06820		CCR2, CRTISO	CAROTENOID AND CHLOROPLAST REG...		Potri.006G199600 [exp]	9.16	0.9068

Compare expression of checked genes

Potri.002G106566 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.