Plant FIBer expression Database

Potri.002G106632 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G24520 269 / 2e-85 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
AT4G30210 257 / 1e-80 AR2, ATR2 P450 reductase 2 (.1.2)
AT3G02280 74 / 1e-14 Flavodoxin family protein (.1)
AT1G75200 58 / 2e-09 flavodoxin family protein / radical SAM domain-containing protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.005G153800
[exp]
378 / 2e-127 AT4G24520 974 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Potri.018G092100
[exp]
243 / 3e-75 AT4G30210 984 / 0.0 P450 reductase 2 (.1.2)
Potri.006G167200
[exp]
230 / 1e-70 AT4G30210 965 / 0.0 P450 reductase 2 (.1.2)
Potri.004G101100
[exp]
72 / 5e-14 AT3G02280 811 / 0.0 Flavodoxin family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032842
[exp]
307 / 3e-100 AT4G24520 901 / 0.0 ARABIDOPSIS CYTOCHROME REDUCTASE, P450 reductase 1 (.1.2)
Lus10019996
[exp]
268 / 5e-85 AT4G30210 1013 / 0.0 P450 reductase 2 (.1.2)
Lus10015525
[exp]
267 / 2e-84 AT4G30210 1009 / 0.0 P450 reductase 2 (.1.2)
Lus10025484
[exp]
215 / 3e-69 AT4G30210 318 / 2e-104 P450 reductase 2 (.1.2)
Lus10006972
[exp]
221 / 8e-67 AT4G30210 983 / 0.0 P450 reductase 2 (.1.2)
Lus10017589
[exp]
61 / 3e-10 AT3G02280 810 / 0.0 Flavodoxin family protein (.1)
Lus10012082
[exp]
47 / 8e-06 AT1G75200 959 / 0.0 flavodoxin family protein / radical SAM domain-containing protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0042 Flavoprotein PF00258 Flavodoxin_1 Flavodoxin
Representative CDS sequence
>Potri.002G106632.1 pacid=42777530 polypeptide=Potri.002G106632.1.p locus=Potri.002G106632 ID=Potri.002G106632.1.v4.1 annot-version=v4.1
ATGAGTTCTGGTGGTTCTGATTTGGTTAGGTTCGTTGAATCAGTGCTGGGGGTGTCTTTTGGTGACTCAGTGTCTGACTCTGTGGTCGTGATAATTACAA
CGTCTTTTGCGGTTGTATTTGGATTGGTGGCGTTTATATCGAAGAGATCATCAGATCGGAGCAAAGTCGTGAAGCCGTTGGTGGTTCCTAAGTCACTGTC
AGTTAAGGATGAAGAAGACGAGTCCGAGGCTCTGGCTGGGAAAACTAAGGTTACTATTTTTTACGGGACTCAGACCGGGACAGCAGAGGGTTTTGCTAAG
GCTTTAGCTGAAGAGGTCAAAGCAAGATATGAGAAAGCAGCTGTTAAAGTTGTTGACCTGGATGATTATGCTGTGGAGGATGATCAATATGAAGAAAAAT
TGAAGAAAGAGACTTTGGCATTGCTCATGGTTGCCACTTATGGAGATGGAGAGCCAACTGATAATTCTGCTAGATTTTATAAGTGGTTTACTGAGGGAAA
TGAAAGGGGAATCTGGCTTCAACAGCTTTCCTATGGCATTTTTGGCCTTGGTAACCGTCAATATGAACATTTTAATAAGATAGCAAATGAGCTTGACGAC
CTGCTCTGCGAACAAGGAGGAAAGCGTCTTGTTCCTGTTGGTCTTGGCGATGATTATCAATGCATAGAAGATGATTTTTCTGCTTGGAAAGAATTATTGT
GGCCCGAGTTAGACCAGTTGCTCAGAGATGAAGATGATGTGAACTCTCCATCTACTCCTTACACAGCTGCTATACCTGAATATCGATCGGTGATTCATGA
TCCTTCAATTGCATCTGTCAAGGATAAATTCTGA
AA sequence
>Potri.002G106632.1 pacid=42777530 polypeptide=Potri.002G106632.1.p locus=Potri.002G106632 ID=Potri.002G106632.1.v4.1 annot-version=v4.1
MSSGGSDLVRFVESVLGVSFGDSVSDSVVVIITTSFAVVFGLVAFISKRSSDRSKVVKPLVVPKSLSVKDEEDESEALAGKTKVTIFYGTQTGTAEGFAK
ALAEEVKARYEKAAVKVVDLDDYAVEDDQYEEKLKKETLALLMVATYGDGEPTDNSARFYKWFTEGNERGIWLQQLSYGIFGLGNRQYEHFNKIANELDD
LLCEQGGKRLVPVGLGDDYQCIEDDFSAWKELLWPELDQLLRDEDDVNSPSTPYTAAIPEYRSVIHDPSIASVKDKF

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT4G24520 AR1, ATR1 ARABIDOPSIS CYTOCHROME REDUCTA... Potri.002G106632
[exp]
0 1
AT5G50780 Histidine kinase-, DNA gyrase ... Potri.012G102800
[exp]
2.44 0.8580
AT2G01980 ATSOS1, SOS1, A... ARABIDOPSIS SALT OVERLY SENSIT... Potri.008G140700
[exp]
3.46 0.8356
AT5G47020 unknown protein Potri.001G148300
[exp]
8.66 0.8129
AT5G36930 Disease resistance protein (TI... Potri.019G017082
[exp]
12.40 0.8502
AT4G27190 NB-ARC domain-containing disea... Potri.001G446016
[exp]
12.48 0.8467
AT4G27190 NB-ARC domain-containing disea... Potri.001G445700
[exp]
13.07 0.8328
AT5G36930 Disease resistance protein (TI... Potri.019G018396
[exp]
13.71 0.8465
AT2G21070 FIO1 FIONA1, methyltransferases (.1... Potri.009G131700
[exp]
19.23 0.8051
AT2G31320 ATPARP2 poly(ADP-ribose) polymerase 2 ... Potri.002G041300
[exp]
20.73 0.8324
AT5G20930 TSL TOUSLED, Protein kinase superf... Potri.004G193300
[exp]
24.39 0.8373

Potri.002G106632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.