Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09970 1204 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G19700 948 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT5G49660 698 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G28440 668 / 0 HSL1 HAESA-like 1 (.1) AT1G72180 624 / 0 Leucine-rich receptor-like protein kinase family protein (.1) AT5G65710 600 / 0 HSL2 HAESA-like 2 (.1) AT4G28490 598 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT5G65700 572 / 0 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 560 / 0 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1) AT5G25930 550 / 4e-180 Protein kinase family protein with leucine-rich repeat domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G081800 [exp] 1132 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.002G111700 [exp] 719 / 0 AT5G49660 1229 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Potri.019G078400 [exp] 694 / 0 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.011G058100 [exp] 679 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 678 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.007G135400 [exp] 642 / 0 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 631 / 0 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.006G235800 [exp] 613 / 0 AT5G25930 1074 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1) Potri.018G057100 [exp] 588 / 0 AT5G25930 1034 / 0.0 Protein kinase family protein with leucine-rich repeat domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007232 [exp] 1291 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 1286 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10020500 [exp] 776 / 0 AT1G09970 755 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10007233 [exp] 687 / 0 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028234 [exp] 687 / 0 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10009476 [exp] 665 / 0 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10015393 [exp] 659 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10013968 [exp] 657 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 650 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 580 / 0 AT1G28440 942 / 0.0 HAESA-like 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain CL0022 [poplar] [flax] LRR PF13855 [poplar] [flax] LRR_8 Leucine rich repeat
Representative CDS sequence Show only first row Show all	>Potri.002G106800.1 pacid=42778618 polypeptide=Potri.002G106800.1.p locus=Potri.002G106800 ID=Potri.002G106800.1.v4.1 annot-version=v4.1 ATGTCAACGGCCTATTCTTCCATGCAACACTTCCCTTCTCTGCTTCTTATCTGTTTTCTCCTTCTCTTCTCCAAGATCAAATCCGATGAACTTCAAATAC TACTAAACCTTAAAACTTCACTTAAGAAATCAAATACTCATGTATTTGATTCTTGGGATTCAAATAAACCCATATGTGAATTCACAGGAATTACCTGTAA TTCAGATAAGTCAGTCAAAGAAATCGAGCTTTCGGGACAGAACTTAGAGGGTGTCCTTCCTCTTGATTCAATATGCCAGCTCCAGTCTTTGGATAAGCTT TCTTTTGGTTACAACTTCTTGCACGGTACCATCACGAATTACTTGAACAACTGCACAAAGTTGCAATATCTCGATCTTGGCAACAATTTGTTCACTGGGC CATTCCCTGACATATCATCTCTCAGTCAATTACAGCACCTGTATTTGAACCAGAGTAGGTTCAATGGCGGTTTTCCATGGAAGTCGCTGCAAAACATGAC AGGTCTCGTTACTCTAAGTATCGGGGACAATACATTTGATCGAGCTCCGTTTCCAAATGAAGTTGTCAAGCTAACAAAACTGAATTGGCTTTACATGACG AATTGCAGCATCGAAGGCACAATTCCTGAAGAAATTGGAAATCTTATCGAGCTCACAAACTTGGAGCTTAGTAGCAATTATCTATCCGGAGAGATTCCTT CTCAGATAGTAAAGCTACGAAATCTCTGGCAGCTCGAGCTCTTCAACAACAGCTTGACGGGAAAGTTGCCGGTCGGGTTTGGAAACTTGACAAAGCTGGA AAAATTTGATGCGTCGACGAACAATTTAGAAGGTGATTTGTCTGAATTGAGATTTTTGACCAATTTGGTCTCTCTGCAGCTATATACGAACGAGCTTTCT GGTGAAATTCCAGCAGAGTTCGGTGAATTCAAGAAACTTGTGAATGTTTCGTTGTACCAGAACCAGTTAACAGGTCCTCTTCCTCCAAAGCTTGGTTCTT GGACTGATTTTGATTTTATTGATGTGTCCGAGAATCAGTTGACCGGCTCAATTCCGCCAGATATGTGCAAGAAGGGGACTATGACTCGGCTTCTCGTGCT TCAAAACAACTTGACTGGCGAAATTCCGGCTGGCTATGCAAACTGTAAAACGTTATTGAGGTTCAGAGTCAGCAACAACCGACTTTCTGGCAAGGTTCCT GCTGGAATTTGGGGATTGCCCGAGGCGAATATAATTGACATCGAGATGAATCAATTCGAAGGTCCAGTGACCACTGATATTGGAAACGCTAAAGCTCTCG GTCAATTGTTGCTCGGAAACAATCGCTTATCTGGTGAATTACCAGAAGAGATTTCGAAAGCTACGTCATTGGTTACAGTCCAGTTAAATGACAATCTGTT TTCGGGAAAAATTCCAAATAAAATTGGTGAACTCAAGCAGTTGAGCAGTCTTCATTTGGAAAACAATATGTTCTCTGGTTCAATACCGGATTCATTAGGC TCATGTTATTCTCTCACTGACGTGAGCATGGCTCATAATTCGCTTTCTGGTGAAATCCCATCCACTTTGGGGCATCTACCAACTTTGAATTCTCTAAATT TGTCGGAGAATGAGATTTCAGGTCATATTCCAGGAAGCTTGTCATCTTTGAGACTAAGTCTTCTTGATCTATCCCACAATAGATTATCTGGTCCAATACC TCAATCTTTATCAATTGAAGCTTACAATGGTAGCTTCACTGGAAATCCTGGTCTCTGTAGCCGGACAATTAGCTCTTTTCAGCGATGCTACCCTAAATCC AGTATCTCCAAGGAGGTCCGTACGCTCATCCTTTGCTTTTCTGTGGGTTCAATGATTTTGCTTGCTTCACTCGCATGCTTCTTCCACTTGAAGAAGAGAG AAAAGTATCATGACCGCTCGTTGAAGGAAGAATCTTGGGACTTGAAATCTTTCCATGTGTTAACCTTCACCGAGGATGAGATTCTTGATTCAATTAAACA AGAGAATCTGGTAGGAAAAGGAGGGTCCGGCAACGTGTACAGAGTGGCCCTCGCCAATGGCAAAGAACTAGCAGTGAAGCATATTTGGACTGCAAATTCT ACTAGCACTAAGAAGAGCAGGAGCACTACACCAATTTTGGGAAAAGAGGCAAGAAAATCTAAGGAATTTGATGCAGAGGTGGAGACCTTGAGCTCAATTA GGCATGTCAACGTGGTGAAGTTGTATTGCAGCATTACCAGTGAGGATTCAAGCCTTTTGGTCTATGAGTATATGCCAAATGGGAGCTTATGGGACCGATT GCATGCATCAAGGAAGATGGAGCTTGATTGGCAGACGAGGTACGAGATTGCTGTGGGGGCAGCTAAGGGTTTGGAGTATCTACATCATGGGTGTGATAGA CCCATAATTCACCGCGATGTGAAGTCTAGCAACATTTTATTGGATGAGTTATTCAAGCCTAGAATTGCTGATTTTGGACTTGCTAAGATGATTCAAGCCA ATGGTGGCAAGGACTCCACCCAAGTCATTGCAGGAACCCATGGTTATATAGCTCCTGAATATGGGTATACATACAAAGTGAACGAGAAGAGTGATGTTTA TAGCTTTGGCGTGGTGTTAATGGAGCTGGTGAGTGGAAAGAGGGCAATAGAGCCAGAATATGGAGATAACAACGACATAGTAGATTGGGTCAGCAGCAAA TTGAAGACTAAACAGAATGTGTTGAGTATAGTGGACTCAAGAATTCCAGAAGCTTTCAAGGAAGACGCTGTCAACGTGTTGAGAATTGCAATTCTCTGCA CTGCAAGGCTTCCAGCAATGAGACCAGCCATGAGAAGTGTAGTCCAAATGTTGGAAGCAGCTGAGCCGTGCAAGCTGGTGAGCATTGCGATCAGTAAAGA TGGTGCTCTTAACATGAGAAAGGAAGTGAGAGATACGGAGAAGTACAACCCAGATCAGTAA
AA sequence Show only first row Show all	>Potri.002G106800.1 pacid=42778618 polypeptide=Potri.002G106800.1.p locus=Potri.002G106800 ID=Potri.002G106800.1.v4.1 annot-version=v4.1 MSTAYSSMQHFPSLLLICFLLLFSKIKSDELQILLNLKTSLKKSNTHVFDSWDSNKPICEFTGITCNSDKSVKEIELSGQNLEGVLPLDSICQLQSLDKL SFGYNFLHGTITNYLNNCTKLQYLDLGNNLFTGPFPDISSLSQLQHLYLNQSRFNGGFPWKSLQNMTGLVTLSIGDNTFDRAPFPNEVVKLTKLNWLYMT NCSIEGTIPEEIGNLIELTNLELSSNYLSGEIPSQIVKLRNLWQLELFNNSLTGKLPVGFGNLTKLEKFDASTNNLEGDLSELRFLTNLVSLQLYTNELS GEIPAEFGEFKKLVNVSLYQNQLTGPLPPKLGSWTDFDFIDVSENQLTGSIPPDMCKKGTMTRLLVLQNNLTGEIPAGYANCKTLLRFRVSNNRLSGKVP AGIWGLPEANIIDIEMNQFEGPVTTDIGNAKALGQLLLGNNRLSGELPEEISKATSLVTVQLNDNLFSGKIPNKIGELKQLSSLHLENNMFSGSIPDSLG SCYSLTDVSMAHNSLSGEIPSTLGHLPTLNSLNLSENEISGHIPGSLSSLRLSLLDLSHNRLSGPIPQSLSIEAYNGSFTGNPGLCSRTISSFQRCYPKS SISKEVRTLILCFSVGSMILLASLACFFHLKKREKYHDRSLKEESWDLKSFHVLTFTEDEILDSIKQENLVGKGGSGNVYRVALANGKELAVKHIWTANS TSTKKSRSTTPILGKEARKSKEFDAEVETLSSIRHVNVVKLYCSITSEDSSLLVYEYMPNGSLWDRLHASRKMELDWQTRYEIAVGAAKGLEYLHHGCDR PIIHRDVKSSNILLDELFKPRIADFGLAKMIQANGGKDSTQVIAGTHGYIAPEYGYTYKVNEKSDVYSFGVVLMELVSGKRAIEPEYGDNNDIVDWVSSK LKTKQNVLSIVDSRIPEAFKEDAVNVLRIAILCTARLPAMRPAMRSVVQMLEAAEPCKLVSIAISKDGALNMRKEVRDTEKYNPDQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09970		RLK7, LRRXI-23 ...	receptor-like kinase 7, Leucin...		Potri.002G106800 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.003G183200 [exp]	2.00	0.8686
AT5G23570		SGS3, ATSGS3	SUPPRESSOR OF GENE SILENCING 3...		Potri.003G188350 [exp]	5.47	0.8372
AT4G27290			S-locus lectin protein kinase ...		Potri.001G411400 [exp]	5.83	0.7892
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.002G073400 [exp]	6.48	0.8057	Pt-SCL1.2
AT4G33890			unknown protein		Potri.001G296200 [exp]	7.54	0.8113
AT1G70630			Nucleotide-diphospho-sugar tra...		Potri.008G186800 [exp]	8.83	0.8367
AT4G21390		B120	S-locus lectin protein kinase ...		Potri.004G027800 [exp]	9.48	0.8215
AT1G34320			Protein of unknown function (D...		Potri.001G305800 [exp]	10.58	0.8290
AT5G22355			Cysteine/Histidine-rich C1 dom...		Potri.016G044200 [exp]	10.81	0.8269
AT3G20340			unknown protein		Potri.011G139400 [exp]	10.95	0.8383

Compare expression of checked genes

Potri.002G106800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.