Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09960 675 / 0 ATSUC4, SUC4, ATSUT4, SUT4 sucrose transporter 4 (.1) AT1G66570 467 / 3e-161 ATSUC7 sucrose-proton symporter 7 (.1.2.3) AT5G06170 466 / 3e-161 ATSUC9 sucrose-proton symporter 9 (.1) AT1G71880 467 / 5e-161 ATSUC1, SUC1 ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 1, sucrose-proton symporter 1 (.1) AT1G22710 465 / 3e-160 SUT1, ATSUC2, SUC2 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) AT2G14670 454 / 4e-156 ATSUC8 sucrose-proton symporter 8 (.1) AT5G43610 450 / 1e-154 ATSUC6 sucrose-proton symporter 6 (.1) AT1G71890 443 / 1e-151 SUC5, ATSUC5 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) AT2G02860 423 / 1e-142 ATSUT2, ATSUC3, SUT2 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G115200 [exp] 463 / 2e-159 AT1G22710 643 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.019G085800 [exp] 455 / 4e-156 AT1G22710 645 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Potri.008G148100 [exp] 418 / 1e-140 AT2G02860 849 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2) Potri.010G093600 [exp] 412 / 2e-138 AT2G02860 816 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032815 [exp] 738 / 0 AT1G09960 694 / 0.0 sucrose transporter 4 (.1) Lus10017910 [exp] 474 / 1e-163 AT1G71890 693 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10018915 [exp] 446 / 2e-152 AT1G71890 616 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028616 [exp] 443 / 2e-151 AT1G71890 617 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10028614 [exp] 442 / 3e-151 AT1G71890 603 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10029766 [exp] 439 / 2e-149 AT1G22710 655 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10007702 [exp] 434 / 4e-148 AT1G22710 588 / 0.0 SUCROSE TRANSPORTER 1, ARABIDOPSIS THALIANA SUCROSE-PROTON SYMPORTER 2, sucrose-proton symporter 2 (.1) Lus10018914 [exp] 432 / 2e-147 AT1G71890 593 / 0.0 SUCROSE-PROTON SYMPORTER 5, Major facilitator superfamily protein (.1) Lus10007691 [exp] 425 / 2e-147 AT1G09960 425 / 1e-147 sucrose transporter 4 (.1) Lus10030492 [exp] 400 / 3e-133 AT2G02860 863 / 0.0 ARABIDOPSIS THALIANA SUCROSE TRANSPORTER 3, sucrose transporter 2 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.002G106900.1 pacid=42778986 polypeptide=Potri.002G106900.1.p locus=Potri.002G106900 ID=Potri.002G106900.1.v4.1 annot-version=v4.1 ATGTCAGTCGCTAACCCAGAGCCACATCGAGCCAGCAGGTCTCGACAAACGAACCGACCCCCGTCAACTCGACACCAACAACAACAATCAAGTAGAGTCC CGTTACGCCAACTCCTCCGAGTGACATCAATCGCTGGTGGGATACAATTCGGCTGGGCGTTACAGCTCTCTCTCTTAACACCCTACGTGCAGGAGCTAGG AATCCCTCACAAATGGGCCAGTATAATCTGGTTGTGCGGCCCATTATCGGGATTGTTTGTGCAACCTCTTGTTGGCGTCATGAGCGATCGGTGCACCAGC CGGTTTGGAAGACGCAGACCGTTTATTGTTGCGGGTTCGCTTTTGATTGCGATATCGGTTTTGATTATCGGTCATTCCGCTGACATTGGGTGGTGGTTAG GCGATAGAGGAGGTGTTAGACCAAGAGCAATTGGCGCTTTTGTGTTTGGGTTTTGGATTCTCGATGTTGCTAATAATATGACCCAGGGTCCTTGTCGTGC TCTTCTCGCTGATCTTACTGGAAAAGATCATCGAAGAACTAGAGTCGCAAATGCTTATTTCTCACTTTTCATGGCTATTGGTAATATTCTTGGTTTTGCC ACTGGATCATATAATGGGTGGTACAAGGTTTTTCCTTTTACTGTTACTTCTGCATGCAATATTGACTGTGCGAATCTCAAGTCTGCCTTTTATCTCGATG TTGTTTTCATGGCAATTACTGCCTGCATAAGCATCTCAGCAGCTCAAGAATCACCTCTAGATTTGCCGGCCAGATCTATGCTTGCTGATGAGGAAATGCC AGGCCAGTCAAACTCTGAACAAGAGGCTTTCCTCTGGGAGCTATTTGGGACTTTTAGATGTTTCCCATCAACTGTATGGATAATATTGCTTGTTACTGCT CTGAATTGGATTGGTTGGTTTCCATTTCTGCTCTTTGACACTGACTGGATGGGTCGAGAAATTTATGGTGGCAAGCCAAATGAAGGACAGAATTATAACA CTGGAGTCAGAATGGGTGCATTTGGTCTGATGTTCAATTCAGTAATTCTTGGAGTGACATCTGTGCTCATGGAGAAGCTCTGCAGCAAGTGGGGAGCAGG TTTCTTATGGGGCCTTTCGAACATCTTAATGGCTCTCTGCTTTCTTTCAATGCTTGTACTCTCCTATGTGGCAAGCCATATTGGCTACATGGGACATAAT CTACCACCAGATAGCATTGTGGTAATTGCACTAGTGATTTTTGCAGTGCTTGGCATGCCATTGGCGATCACTTACAGTGTTCCATATGCTATGGTTTCCT CACGTATTGAATCCTTGGGACTTGGACAAGGGTTGTCAATGGGTGTTCTCAATCTGGCAATTGTGCTTCCACAGGTGGTGGTTTCTCTGGGAAGTGGACC ATGGGATCAAATATTTGGTGGTGGAAACTCCCCAGCCATTGCTATTGGAGCACTCGCTGCTTTTGCTGCTGGAATTATAGCCATCTTGGGTATTCCTCGA TCAGGAGTTCAAAAGCCCATGGTCTTCTCATGA
AA sequence Show only first row Show all	>Potri.002G106900.1 pacid=42778986 polypeptide=Potri.002G106900.1.p locus=Potri.002G106900 ID=Potri.002G106900.1.v4.1 annot-version=v4.1 MSVANPEPHRASRSRQTNRPPSTRHQQQQSSRVPLRQLLRVTSIAGGIQFGWALQLSLLTPYVQELGIPHKWASIIWLCGPLSGLFVQPLVGVMSDRCTS RFGRRRPFIVAGSLLIAISVLIIGHSADIGWWLGDRGGVRPRAIGAFVFGFWILDVANNMTQGPCRALLADLTGKDHRRTRVANAYFSLFMAIGNILGFA TGSYNGWYKVFPFTVTSACNIDCANLKSAFYLDVVFMAITACISISAAQESPLDLPARSMLADEEMPGQSNSEQEAFLWELFGTFRCFPSTVWIILLVTA LNWIGWFPFLLFDTDWMGREIYGGKPNEGQNYNTGVRMGAFGLMFNSVILGVTSVLMEKLCSKWGAGFLWGLSNILMALCFLSMLVLSYVASHIGYMGHN LPPDSIVVIALVIFAVLGMPLAITYSVPYAMVSSRIESLGLGQGLSMGVLNLAIVLPQVVVSLGSGPWDQIFGGGNSPAIAIGALAAFAAGIIAILGIPR SGVQKPMVFS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09960		ATSUC4, SUC4, A...	sucrose transporter 4 (.1)		Potri.002G106900 [exp]	0	1
AT4G26700		ATFIM1	ARABIDOPSIS THALIANA FIMBRIN 1...		Potri.001G360100 [exp]	1.41	0.8318
AT2G03620		AtMRS2-5, AtMGT...	magnesium transporter 3 (.1.2)		Potri.010G158100 [exp]	7.61	0.7669
AT3G57650		LPAT2	lysophosphatidyl acyltransfera...		Potri.006G055000 [exp]	13.52	0.7401
AT2G13560		NAD-ME1	NAD-dependent malic enzyme 1 (...		Potri.014G043700 [exp]	16.73	0.7064
AT3G05030		ATNHX2, NHX2	sodium hydrogen exchanger 2 (....		Potri.013G026600 [exp]	17.08	0.8143
					Potri.010G168900 [exp]	17.88	0.6993
AT3G20970		ATNFU2, NFU4	ARABIDOPSIS THALIANA NFU DOMAI...		Potri.010G237400 [exp]	24.45	0.7715	NFU4.2
AT5G55630		ATTPK1, ATKCO1	TWO PORE K CHANNEL 1, TWO PORE...		Potri.008G004600 [exp]	24.53	0.7826
AT2G26210			Ankyrin repeat family protein ...		Potri.018G047000 [exp]	26.72	0.6818
AT3G53230			ATPase, AAA-type, CDC48 protei...		Potri.016G091600 [exp]	30.49	0.7005	Pt-CDC48.2

Compare expression of checked genes

Potri.002G106900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.