Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	Pt-ZF14.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58340 600 / 0 BCD1, ZRZ, ZF14 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) AT4G23030 446 / 2e-152 MATE efflux family protein (.1) AT4G29140 436 / 3e-148 ADS1 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) AT5G52050 413 / 2e-139 MATE efflux family protein (.1) AT5G19700 410 / 4e-138 MATE efflux family protein (.1) AT2G38510 375 / 8e-125 MATE efflux family protein (.1) AT1G71870 343 / 3e-112 MATE efflux family protein (.1) AT5G49130 317 / 4e-102 MATE efflux family protein (.1) AT4G22790 213 / 1e-62 MATE efflux family protein (.1) AT1G71140 201 / 5e-58 MATE efflux family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G121400 [exp] 495 / 4e-171 AT4G23030 635 / 0.0 MATE efflux family protein (.1) Potri.012G133500 [exp] 492 / 8e-170 AT4G23030 578 / 0.0 MATE efflux family protein (.1) Potri.015G135600 [exp] 489 / 1e-168 AT4G23030 576 / 0.0 MATE efflux family protein (.1) Potri.007G043100 [exp] 434 / 2e-147 AT1G58340 475 / 8e-164 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Potri.010G011400 [exp] 362 / 2e-119 AT5G49130 611 / 0.0 MATE efflux family protein (.1) Potri.016G134800 [exp] 362 / 7e-119 AT2G38510 597 / 0.0 MATE efflux family protein (.1) Potri.019G086100 [exp] 360 / 9e-119 AT1G71870 654 / 0.0 MATE efflux family protein (.1) Potri.013G115600 [exp] 359 / 2e-118 AT1G71870 637 / 0.0 MATE efflux family protein (.1) Potri.001G115400 [exp] 243 / 1e-73 AT4G22790 487 / 3e-169 MATE efflux family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007231 [exp] 613 / 0 AT1G58340 649 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10028230 [exp] 535 / 0 AT1G58340 567 / 0.0 ZRIZI, BUSH-AND-CHLOROTIC-DWARF 1, MATE efflux family protein (.1) Lus10017836 [exp] 497 / 5e-172 AT4G23030 608 / 0.0 MATE efflux family protein (.1) Lus10027417 [exp] 470 / 5e-161 AT4G23030 601 / 0.0 MATE efflux family protein (.1) Lus10012944 [exp] 419 / 2e-141 AT4G29140 639 / 0.0 ACTIVATED DISEASE SUSCEPTIBILITY 1, MATE efflux family protein (.1) Lus10009788 [exp] 334 / 9e-109 AT5G49130 627 / 0.0 MATE efflux family protein (.1) Lus10025237 [exp] 328 / 2e-105 AT2G38510 640 / 0.0 MATE efflux family protein (.1) Lus10025156 [exp] 304 / 4e-98 AT2G38510 568 / 0.0 MATE efflux family protein (.1) Lus10038987 [exp] 256 / 2e-78 AT1G71870 527 / 0.0 MATE efflux family protein (.1) Lus10007006 [exp] 223 / 4e-66 AT4G22790 549 / 0.0 MATE efflux family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0222 [poplar] [flax] MviN_MATE PF01554 [poplar] [flax] MatE MatE
Representative CDS sequence Show only first row Show all	>Potri.002G107200.1 pacid=42778266 polypeptide=Potri.002G107200.1.p locus=Potri.002G107200 ID=Potri.002G107200.1.v4.1 annot-version=v4.1 ATGTGCAATCCAACCCCAGCTAAACCATCCTCATTTCTCTGTCCCAAGAAACCTCAGTTCGGTAATAAACCAAACAAAACTATGGATCCTTACACCGATG ATGATCAGGAAGAACAGTTACATGGATGGCCAACTCCTTCTGAGGCCTTGCAAGAAATCAAAGAAATAGCGAAGATATCTGGCCCAACAGCAATGACTGG TCTTGTTCTGTATTCAAGAGCGATGATCTCCATGCTTTTTCTTGGCTATCTTGGGGAGCTTGAACTTGCTGGTGGCTCACTCTCTATAGGTTTCGCCAAC ATCACTGGCTACTCTGTGCTCTCTGGTTTAGCTATGGGAATGGAACCCATCTGTGGACAAGCTTATGGAGCAAAACACTGGAAGATACTTGGCTTGACTC TTCAAAGAACTGTTCTCCTCCTCCTCTCCACCTCTGTTCCAATATCCTTCATGTGGCTAAACATGAAGAGCATCCTTTTATGGTGTGGTCAAGACAAAGA AATATCTTCAGTGGCCCATACTTTCATTCTTTTTTCCATTCCTGATCTCTTCCTTCTTTCACTTCTTCACCCGCTAAGAATCTATCTCAGGACGCAAAGC ATTACATTACCGATAACTTACTGTTCAGCCATCTCTGTTCTTCTCCATGTCCCTTTGAATTTCCTTCTTGTTGTCCATTTCAAAATGGGAATTGCAGGAG TGGCGATAGCCATGGTTTGGACCAATCTCAATCTCTTTCTCTCACTCGCTTCTTTCATTTACTTCTCTGGTGTATATAAAGATTCATGGGTTTCTCCGAG CATGGATTGCCTTAGAGGATGGTCATCTTTGCTAACTCTTGCTGTGCCCACTTGTGTTTCTGTTTGCCTTGAGTGGTGGTGGTATGAGTTCATGATAATG CTATGCGGACTACTTATTAACCCAAAAGCGACAGTAGCGTCAATGGGAATTCTTATCCAGACAACGTCGTTAGTCTATGTTTTTCCATCATCTCTAAGCC TTGGAGTCTCAACAAGAGTTGGAAATGAGCTAGGGGCCAACCGCCCGGCAAAAGCCCGCATTTCCATGATTGTTTCCCTCGTATGTGCGGTCGCTTTGGG CCTTATGGCCATGCTATTCACAACATTGATGAGGCATCAATGGGGCAGATTTTTCACTAATGATGCTGAAATCCTAGAGCTAACATCAATAGCATTGCCA ATTGCTGGGCTTTGCGAGCTTGGAAATTGCCCCCAGACAACTGGTTGTGGGGTTTTAAGAGGGAGTGCTAGGCCTACCATTGGAGCAAATATCAATTTAG GTTCATTTTACTTGGTGGGTATGCCAGTTGCAATGTTTCTGGGGTTTGTGGCTAAAATGGGGTTTGCAGGACTCTGGCTCGGATTGCTTGCAGCTCAAGC TTCTTGTGCCTTGTTGATGCTGTATGCTCTATGCACAACAGACTGGATGGTTCAAGTAGAGAGAGCAAGATTGCTCACACAAACATCTGGAGCGTGTACT ACTCCAATATTACCAATATCATCATCCAAGCTAGAAGTTATGACCACTAAGGAAGCTAACAGTAACAAGGCTAATCTTGAAGACATATTGTGCATTAATG ATGATCTTGTGAAGTCAGCTTCACTCGAAACGGACCCACTGATATCCACAACACAAACCGTGCATTAA
AA sequence Show only first row Show all	>Potri.002G107200.1 pacid=42778266 polypeptide=Potri.002G107200.1.p locus=Potri.002G107200 ID=Potri.002G107200.1.v4.1 annot-version=v4.1 MCNPTPAKPSSFLCPKKPQFGNKPNKTMDPYTDDDQEEQLHGWPTPSEALQEIKEIAKISGPTAMTGLVLYSRAMISMLFLGYLGELELAGGSLSIGFAN ITGYSVLSGLAMGMEPICGQAYGAKHWKILGLTLQRTVLLLLSTSVPISFMWLNMKSILLWCGQDKEISSVAHTFILFSIPDLFLLSLLHPLRIYLRTQS ITLPITYCSAISVLLHVPLNFLLVVHFKMGIAGVAIAMVWTNLNLFLSLASFIYFSGVYKDSWVSPSMDCLRGWSSLLTLAVPTCVSVCLEWWWYEFMIM LCGLLINPKATVASMGILIQTTSLVYVFPSSLSLGVSTRVGNELGANRPAKARISMIVSLVCAVALGLMAMLFTTLMRHQWGRFFTNDAEILELTSIALP IAGLCELGNCPQTTGCGVLRGSARPTIGANINLGSFYLVGMPVAMFLGFVAKMGFAGLWLGLLAAQASCALLMLYALCTTDWMVQVERARLLTQTSGACT TPILPISSSKLEVMTTKEANSNKANLEDILCINDDLVKSASLETDPLISTTQTVH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58340		BCD1, ZRZ, ZF14	ZRIZI, BUSH-AND-CHLOROTIC-DWAR...		Potri.002G107200 [exp]	0	1	Pt-ZF14.1
					Potri.013G032900 [exp]	1.41	0.9054
AT2G43400		ETFQO	electron-transfer flavoprotein...		Potri.017G027500 [exp]	4.58	0.8551
AT1G10155		ATPP2-A10	phloem protein 2-A10 (.1)		Potri.015G120200 [exp]	4.89	0.8622
AT2G35390			Phosphoribosyltransferase fami...		Potri.003G088400 [exp]	8.12	0.8351
AT1G19715			Mannose-binding lectin superfa...		Potri.002G030400 [exp]	8.24	0.8389
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Potri.002G014300 [exp]	9.16	0.8314
AT5G38280		PR5K	PR5-like receptor kinase (.1)		Potri.004G014200 [exp]	10.19	0.8311
AT1G07160			Protein phosphatase 2C family ...		Potri.013G099400 [exp]	12.48	0.8193
AT3G55410			2-oxoglutarate dehydrogenase, ...		Potri.008G051600 [exp]	14.28	0.8134
AT4G23180		RLK4, CRK10	cysteine-rich RLK (RECEPTOR-li...		Potri.004G026100 [exp]	17.94	0.8044

Compare expression of checked genes

Potri.002G107200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.