Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27600 477 / 1e-168 IRX9-L, I9H IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) AT2G37090 195 / 7e-59 IRX9 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT5G67230 131 / 1e-33 IRX14-L, I14H IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT4G36890 118 / 5e-29 IRX14 irregular xylem 14, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G240200 [exp] 355 / 1e-119 AT1G27600 374 / 2e-127 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Potri.006G131000 [exp] 226 / 9e-71 AT2G37090 439 / 7e-155 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.016G086400 [exp] 225 / 2e-70 AT2G37090 473 / 4e-168 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.005G141500 [exp] 116 / 3e-28 AT5G67230 563 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.007G047500 [exp] 115 / 4e-28 AT5G67230 543 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007692 [exp] 486 / 1e-171 AT1G27600 498 / 2e-176 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10032817 [exp] 482 / 3e-170 AT1G27600 484 / 3e-171 IRREGULAR XYLEM 9-LIKE, IRREGULAR XYLEM 9 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1.2) Lus10019917 [exp] 208 / 1e-63 AT2G37090 417 / 3e-146 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10026487 [exp] 197 / 2e-59 AT2G37090 409 / 8e-143 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10015069 [exp] 132 / 3e-35 AT2G37090 236 / 9e-76 IRREGULAR XYLEM 9, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10010268 [exp] 119 / 3e-29 AT5G67230 634 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041601 [exp] 118 / 8e-29 AT5G67230 632 / 0.0 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10011500 [exp] 95 / 9e-22 AT5G67230 379 / 6e-130 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10019325 [exp] 0 / 1 AT5G67230 335 / 5e-127 IRREGULAR XYLEM 14-LIKE, IRREGULAR XYLEM 14 Homolog, Nucleotide-diphospho-sugar transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF03360 [poplar] [flax] Glyco_transf_43 Glycosyltransferase family 43
Representative CDS sequence Show only first row Show all	>Potri.002G107300.4 pacid=42779007 polypeptide=Potri.002G107300.4.p locus=Potri.002G107300 ID=Potri.002G107300.4.v4.1 annot-version=v4.1 ATGGCATCAATCCGTCGAACACTCTCACAGGTTTACCAAGACCGCAGCTACCAAAACGGCGTCGCTTCAGCACAAGCTCACAAGCTCTTCAGCACTAACA ACAACAGCGGCAAGTATTCTTCCTTGACCTCCACCTCCGCCGTCGCAGCAGCTTCCGTCTATCTCCGCCGCAAAGGATTTCGCAGATCCTTTTATAGGTG CACGATATTCTTCATCCTAGGGCTTTTACTTGGTATCTTCCCGTTTGGTCAAGTGGATAACGATATCAATAAGCATGATTTCTCCTTCGAAATGAAGCCG CCACATGTCAATGTCCAATTGGACACCAAAGATAATTTCGCTCTCGCTGCCGTGTCCTTCGGCGTCGAGAAAACGACACCGCAATTGGATCGATTTTCAA GGTTTGATTATGTAGAGCGAAAGCAAGTGATAGTGATAACACCGACATATAATCGAGCATTACAAGCCTACTTCTTGAATAGATTAGGTCAGGTGTTGAG GTTAGTGCAGCCGCCGTTGTTGTGGATTGTGGTGGAGATGACGTCAGCATCGGCGGAGACAGCGGAGATATTGAGGAAAACCGGGGTGATGTATAGGCAT TTGGTTTGTGTTAATAAGAATAACACGAATGTGAAGGACAGAGGAGTGCATCAGAGGAATGCGGGATTGGAGCATATAGAAAGGCATAGACTTGATGGGA TTGTGTATTTTGCTGATGATGATAATGTATATTCGCTTCAATTGTTTGAGAGCTTGAGAAATATCAGTCATTTTGGCACTTGGCCTGTTGCAATGCTTGC ACAAAGCAAAAACAAAGCAATTGTGGAAGGTCCGGTATGCAATGCCAGTCAAGTAATTGGATGGCACACAAATGAGAAAAGTAAAAGACTCCGCAGGTTT CATGTTGATATGTCTGGATTTGCTTTCAACAGCACCATCTTGTGGGACCCAAAGAGATGGAACCGCCCCTTTTCAAATCCAATTCGACAGTTAGATACAG TGAAGGAGGGTTTTCAAGAGACCACATTCATTGAGCAAGTGGTAGAAGATGAAAGTCAAATGGAAAGTGTACCACCCAGCTGTTCAAGGATACTGAACTG GCATCTTCATTTAGATGCTCATGGTCTTGTCTATCCCAGAGGCTGGCTGCTCCAGAAGAACCTAGAAGTTGTTCAGCCCATCAAGTGA
AA sequence Show only first row Show all	>Potri.002G107300.4 pacid=42779007 polypeptide=Potri.002G107300.4.p locus=Potri.002G107300 ID=Potri.002G107300.4.v4.1 annot-version=v4.1 MASIRRTLSQVYQDRSYQNGVASAQAHKLFSTNNNSGKYSSLTSTSAVAAASVYLRRKGFRRSFYRCTIFFILGLLLGIFPFGQVDNDINKHDFSFEMKP PHVNVQLDTKDNFALAAVSFGVEKTTPQLDRFSRFDYVERKQVIVITPTYNRALQAYFLNRLGQVLRLVQPPLLWIVVEMTSASAETAEILRKTGVMYRH LVCVNKNNTNVKDRGVHQRNAGLEHIERHRLDGIVYFADDDNVYSLQLFESLRNISHFGTWPVAMLAQSKNKAIVEGPVCNASQVIGWHTNEKSKRLRRF HVDMSGFAFNSTILWDPKRWNRPFSNPIRQLDTVKEGFQETTFIEQVVEDESQMESVPPSCSRILNWHLHLDAHGLVYPRGWLLQKNLEVVQPIK

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27600		IRX9-L, I9H	IRREGULAR XYLEM 9-LIKE, IRREGU...		Potri.002G107300 [exp]	0	1
AT5G35430			Tetratricopeptide repeat (TPR)...		Potri.006G065600 [exp]	1.00	0.7342
AT5G08130	bHLH	BIM1, bHLH046	basic helix-loop-helix (bHLH) ...		Potri.015G048000 [exp]	4.24	0.6420
AT3G55390			Uncharacterised protein family...		Potri.008G053500 [exp]	4.35	0.6317
AT5G54920			unknown protein		Potri.011G138600 [exp]	8.48	0.6591
AT3G59770		AtSAC9, SAC9	ARABIDOPSIS THALIANA SUPPRESSO...		Potri.013G128500 [exp]	8.94	0.6396
AT3G57890			Tubulin binding cofactor C dom...		Potri.016G049000 [exp]	9.21	0.6321
AT4G16110	GARP	ARR2	response regulator 2 (.1)		Potri.010G105600 [exp]	11.31	0.6425
AT1G72810			Pyridoxal-5'-phosphate-depende...		Potri.001G199100 [exp]	17.32	0.6307
AT3G07320			O-Glycosyl hydrolases family 1...		Potri.002G247900 [exp]	18.16	0.6743	SGGN1.2
AT2G03640			Nuclear transport factor 2 (NT...		Potri.008G096700 [exp]	23.36	0.6429

Compare expression of checked genes

Potri.002G107300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.