Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G27595 761 / 0 unknown protein AT5G01400 561 / 1e-175 ESP4 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1) AT1G27590 252 / 7e-76 unknown protein AT1G27570 265 / 1e-75 phosphatidylinositol 3- and 4-kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G116600 [exp] 590 / 0 AT5G01400 1348 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028229 [exp] 784 / 0 AT1G27595 494 / 3e-161 unknown protein Lus10005032 [exp] 474 / 3e-144 AT5G01400 1159 / 0.0 ENHANCED SILENCING PHENOTYPE 4, HEAT repeat-containing protein (.1) Lus10007230 [exp] 405 / 6e-126 AT1G27595 340 / 7e-105 unknown protein Lus10007229 [exp] 305 / 6e-95 AT1G27590 281 / 1e-95 unknown protein Lus10028228 [exp] 301 / 4e-93 AT1G27590 271 / 4e-91 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12295 [poplar] [flax] Symplekin_C Symplekin tight junction protein C terminal
Representative CDS sequence Show only first row Show all	>Potri.002G107400.11 pacid=42777714 polypeptide=Potri.002G107400.11.p locus=Potri.002G107400 ID=Potri.002G107400.11.v4.1 annot-version=v4.1 ATGGCTTCAATGGACGAAGCGCTCTCTCTCCTCACCGCAGCGAATTCTCACGGCGATTTGACCGTTAAGCTATCTTCTCTTAAGCAAGCCAAAGATGTTT TATTGTCACTCGAGCCGTCGTTGGCGGCTGAGCTTTTTCCTTCCTTAGTCGAACTGCAGTACTCGCCGGAGGGAATCGTCCGACAAAAGCTTGTCGAGGT AATTGAAGAAATTGGTTTGAAAGCAATGGAGAATTGCTCAATACTAATACCTGTCTTATTGGGACTTTTAAGAGATAGCGATTCTGTTGTTGCAAGGGAG TCTATTGTTAGTGGCACGCATTTATATTGTGGTGTTCTAGAGGAAATGGCATTGCAGTGTCACCGGCGTGGTAAGGTTGAACGATGGCTCGAAGGACTAT GGATATGGATGCTGAAGTTCAAGGATGCTGTCTTTGCAATTGCATTGGAGCCTGGACCTGTTGGGATAAAGTTACTGGCGTTGAAATTTTTGGAAACATA CATCTTGCTTTTTACTACCGAGACCACTGATTCTGATAGACTTGTTGCAGAAGGAAGCAGACGGTTATTCAACATTTCATGGGTAGCCGGTGGGCATCCT GTTTTGGATCCAGTTTCTCTCATGTCAGATGCCAATAAGACACTTGTCATTCTTTTGGATTTTTTATGGTCGCCTGGTAGTCTTCCTGGTGCACTGATGA TCGCTGTTGTCAATTGTCTTGCAGCTGTAGCGCGGAAGAGGCCGCTTCATTATGAGACTATTCTATCTGCCTTGCTTGATTTTGATCCAAAAGTTGAGAA GGGATGTCATGCTGCTAGTATCCAGTACTCTTTAAGAACTGCTTTTTTGGGATTCCTGCGGTGTACTTATCCAACCATCTTGGAGTCAAGGGATAAATTG TTAAGGGCTTTACGTGCAATGAATGCTGGGGATGCTGCTGAGCAAGCCATCCGGCAAGTTGATAAAATGATTAAAAATAAGGAGCGCACTTCTCGTGAAG TCAGGTTTAGCAGGGATGATCAGCCGACAAGCCAACTGCCTGTTTCAGGAGATCAGCTCCGGAAAAGATCTGTGCCTATGGATAATGAAGAGCAAGCTAA TGGTCATGAAATGGCTCAAAAGCGGAGTCGATATGGTCCTAACATTCTGTCAACGACACCAATCCAAATCAATGAATCTGGACCGGATTCTGTATTTGAT AATGGCGTCTCTGCTAATGTTCATCTATCAGATAGTGATTTGACTCCTGCAGAACAAATGATTGCTATGATTGGTGCATTGCTTGCTGAAGGAGAGAGGG GTGCTGAATCACTTGAACTTCTTATTTCAAATATTCATCCTGATCTGCTTGCTGATATTGTCATTACTAATATGAAGCATTTGCCTAAGTCCTCCCCTCC TTTAACAAGGCTTGGCAGCTTGCCAGTAACACTGCAAAATTGCTCTTCAAGTAGTCCAGCACAGGCAGTGGCACCATCGGCTCCAGTTTCCTCTGCACAA GGACCCATTCCAGTGGTTACTGCAGGCAATTTATCATTGTCTGATGCACCCATTGTCAATAATTTCCCTGTAGATTCGAAACGTGATCCAAGAAGGTTGC TTTCTCAGGATCCACGTCGCCTGGATCCACGTCGTACTGCTACATCAGTTGGAGTACCATCCGTTGCCATTGTGGATGACCATGGTGGAATGCAACCTGA AATGGACAGCTCTGTTTCTTTAAGCAAGGCTTCTCCTCTTCCTGTGGTGACATCAGTTGAGAATCCTCCGGAACCTTATATTTCAAACAGCAAAATTGAG GACAAGAGTTTAGAAGGTCTACTGGTTTCTAAAACTGATCAAGTAAGCATGAGCGAGGAGGTTATCTGTAGACCTGAGGAAATTGTCCCCATTTTAGAGG CCAAAGCCTCTTCAGATCAAGCATTTTCTCCTCCTCACACTTCTGAGGAGGGTGATGTTGTATTGAAGTTGTCAGATTTTGAAGTGGCATCTGGTGCTGA CACGTTATCTGTGATGGAACCTGAGCAGCTTTCCCCAGATGTCTCAAACATATCTGTGCCTGAAGAGATCTGTCAAGTTGATTTACCTCAGCTTCCCCCA TACGTTGAACTCACTGAAGAACAGCAGAAAACTGTGAGACTGTTAGCAGTTGAACGGATTATTGAATCTTACAAGCATCTCTCTGGGACTGAATGCAGCC AGACACGCATGGCATTACTCGCCCGATTAGTTGCTCAGATTGATGCAGATGATGATGTTGTTGTGATGCTGCAAAAACATGTTTTAGTGGATTATCGACA ACATAAGGGACAAGAACTTGTGTTGCATTTTTTGTACCATCTACACTCTCTAACGATTTTAGATTCTGTTGGAAGTGCTTCATATGCTGCTGTTCTATAT GAGAAATTCCTTTTGGTAGTGGCCAGATCTTTGTTGGATGCTTTTCCAGCTTCAGACAAGTCTTTTAGTAAACTTCTCGGTGAAGTTCCTTTCTTGCCCG AGTCTGCCTTCAAATTGTTAGACGATCTCTGCCACTGTGATATTTTTGATTCACATGGAAAAGAAGTTCGTGATGGTGAGCGAGTAACTCAGGGGCTAGG TGCTGTATGGGGTTTGATTTTGGGGCGTCCAAACAACCGGCAGGCATTCTTAGATATAGCTTTGAAGTGTGCTGTTCATTCACAAGATGACATTCGATCG AAAGCTATCCGGCTGGTGGCAAACAAACTCTATCAGCTAAACTACATATCACAAAATATTGAGCAATTTGCAACAAATATGCTGCTCTCTGTTGTGGAAC AGCATGCTTCAGATATCAAGCCTTCACAGTCAGTATCCACTGATCAAAGGGAAGGAGAGGTGGTAAGCCAGGAAGTGTCTGTAAGTGGTTCTCAAGTCTC AGAGACTGGAAATTGTGAAAATGACTCCATGAAGGGTGCACAACCATTAGTCCAAAGTGTTTCGACCATGTCATTTCCTGAAGTGCAAAGACATATTTCT TTATTTTTTGCTTTATGTACAAAGAACCCTGGTCTCCTTCAAATTGTATTTGATATCTATGGACAAGCACCAAAAACTGTAAAACAGGCTGTTCATCGCC ATATTCCTGTTCTAATAAGGGCCCTAGGCTCATCTTATTCTGAGCTGCTTCGAATAATATCTGATCCACCAGAAGGATGTGAAAATCTTTTGATGCTGGT GCTGCAAATATTGACTCAAGAAACAACACCTTCTGCTAATCTGATAACCACGGTCAAACATTTATATGAAACTAAGTTAGAGGATGCCACGATTCTTATT CCAATTTTATCTTCACTTTCGAAGAATGAGGTTTTGCCAATTTTCCCTCGGCTTGTTGGACTTCCTATAGAAAAATTCCAGATGGCACTTGCTCATATTT TACAGGGTTCAGCTCATACAGGTCCAGCTTTAACGCCAGCAGAAGTGTTGGTTGCCATCCATGATATTAATCCTAATAAAGATGGGCTTCCACTCAAAAA GATAACAGATGCCTGTTCAGCTTGTTTTGAGCAACGGACAGTTTTCACACAGCAGGTCCTGGCCAAGGCACTTAATCAGATGGTCGATCAAACTCCTCTT CCTCTACTCTTCATGAGAACAGTTATTCAGGCAATTGATGCTTTTCCTTCATTGGTTGATTTTGTTATGGAAATACTCTCCAAACTCGTGAGCAGACAGG TGTGGAAAATGCCAAAGTTGTGGGTTGGCTTCTTGAAATGTGTCTCTCAAACAAGGCCACATTCTTTTCAGGTTTTGTTGCAGCTACCTCCCCCGCAGCT TGAAAGTGCTCTGAACAAGCATGCTAACCTCAGAGGCCCCTTGGCTACTTATGCCAGCCAACCAAGTACAAAAACTTCTCTACCTAGATCAACGCTTGCA ATTCTTGGTCTTGTAAATGAACGGCACATGCAGCAGCTACCAATTTCATCTTTGCACCCTTCAAGCACAAGTTCTTCAGCTCATGGAGCGAACACCGCGT GA
AA sequence Show only first row Show all	>Potri.002G107400.11 pacid=42777714 polypeptide=Potri.002G107400.11.p locus=Potri.002G107400 ID=Potri.002G107400.11.v4.1 annot-version=v4.1 MASMDEALSLLTAANSHGDLTVKLSSLKQAKDVLLSLEPSLAAELFPSLVELQYSPEGIVRQKLVEVIEEIGLKAMENCSILIPVLLGLLRDSDSVVARE SIVSGTHLYCGVLEEMALQCHRRGKVERWLEGLWIWMLKFKDAVFAIALEPGPVGIKLLALKFLETYILLFTTETTDSDRLVAEGSRRLFNISWVAGGHP VLDPVSLMSDANKTLVILLDFLWSPGSLPGALMIAVVNCLAAVARKRPLHYETILSALLDFDPKVEKGCHAASIQYSLRTAFLGFLRCTYPTILESRDKL LRALRAMNAGDAAEQAIRQVDKMIKNKERTSREVRFSRDDQPTSQLPVSGDQLRKRSVPMDNEEQANGHEMAQKRSRYGPNILSTTPIQINESGPDSVFD NGVSANVHLSDSDLTPAEQMIAMIGALLAEGERGAESLELLISNIHPDLLADIVITNMKHLPKSSPPLTRLGSLPVTLQNCSSSSPAQAVAPSAPVSSAQ GPIPVVTAGNLSLSDAPIVNNFPVDSKRDPRRLLSQDPRRLDPRRTATSVGVPSVAIVDDHGGMQPEMDSSVSLSKASPLPVVTSVENPPEPYISNSKIE DKSLEGLLVSKTDQVSMSEEVICRPEEIVPILEAKASSDQAFSPPHTSEEGDVVLKLSDFEVASGADTLSVMEPEQLSPDVSNISVPEEICQVDLPQLPP YVELTEEQQKTVRLLAVERIIESYKHLSGTECSQTRMALLARLVAQIDADDDVVVMLQKHVLVDYRQHKGQELVLHFLYHLHSLTILDSVGSASYAAVLY EKFLLVVARSLLDAFPASDKSFSKLLGEVPFLPESAFKLLDDLCHCDIFDSHGKEVRDGERVTQGLGAVWGLILGRPNNRQAFLDIALKCAVHSQDDIRS KAIRLVANKLYQLNYISQNIEQFATNMLLSVVEQHASDIKPSQSVSTDQREGEVVSQEVSVSGSQVSETGNCENDSMKGAQPLVQSVSTMSFPEVQRHIS LFFALCTKNPGLLQIVFDIYGQAPKTVKQAVHRHIPVLIRALGSSYSELLRIISDPPEGCENLLMLVLQILTQETTPSANLITTVKHLYETKLEDATILI PILSSLSKNEVLPIFPRLVGLPIEKFQMALAHILQGSAHTGPALTPAEVLVAIHDINPNKDGLPLKKITDACSACFEQRTVFTQQVLAKALNQMVDQTPL PLLFMRTVIQAIDAFPSLVDFVMEILSKLVSRQVWKMPKLWVGFLKCVSQTRPHSFQVLLQLPPPQLESALNKHANLRGPLATYASQPSTKTSLPRSTLA ILGLVNERHMQQLPISSLHPSSTSSSAHGANTA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G27595			unknown protein		Potri.002G107400 [exp]	0	1
AT1G50410			SNF2 domain-containing protein...		Potri.007G000700 [exp]	5.65	0.8783
AT3G05680		EMB2016	embryo defective 2016 (.1.2)		Potri.016G069100 [exp]	5.74	0.8862
AT4G15090	FAR1_related	FAR1	FAR-RED IMPAIRED RESPONSE 1, F...		Potri.006G020600 [exp]	6.00	0.8782
AT3G51950	C3HZnF		Zinc finger (CCCH-type) family...		Potri.003G204300 [exp]	7.21	0.8691
AT3G57300		ATINO80	INO80 ortholog (.1.2)		Potri.006G047100 [exp]	8.12	0.8818
AT1G75660		AtXRN3, XRN3	5'-3' exoribonuclease 3 (.1)		Potri.005G237500 [exp]	9.48	0.8491	Pt-XRN2.2
AT1G24300			GYF domain-containing protein ...		Potri.001G326500 [exp]	10.24	0.8800
AT3G54670		ATSMC1, TTN8	TITAN8, STRUCTURAL MAINTENANCE...		Potri.005G224900 [exp]	10.39	0.8850	CPC902,TTN8.3
AT2G16920		UBC23 ,PFU2	PHO2 FAMILY UBIQUITIN CONJUGAT...		Potri.009G136000 [exp]	11.48	0.8589
AT5G06560			Protein of unknown function, D...		Potri.016G065200 [exp]	14.21	0.8044

Compare expression of checked genes

Potri.002G107400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.