Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37870 1038 / 0 PCK1, PEPCK phosphoenolpyruvate carboxykinase 1 (.1) AT5G65690 1027 / 0 PCK2, PEPCK phosphoenolpyruvate carboxykinase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G011200 [exp] 1050 / 0 AT4G37870 1058 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019242 [exp] 1051 / 0 AT4G37870 1120 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10011582 [exp] 986 / 0 AT4G37870 1051 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10042933 [exp] 629 / 0 AT4G37870 655 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10028227 [exp] 586 / 0 AT4G37870 614 / 0.0 phosphoenolpyruvate carboxykinase 1 (.1) Lus10042934 [exp] 379 / 2e-128 AT4G37870 409 / 8e-141 phosphoenolpyruvate carboxykinase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0374 [poplar] [flax] PEP-carboxyk PF01293 [poplar] [flax] PEPCK_ATP Phosphoenolpyruvate carboxykinase
Representative CDS sequence Show only first row Show all	>Potri.002G107700.15 pacid=42778599 polypeptide=Potri.002G107700.15.p locus=Potri.002G107700 ID=Potri.002G107700.15.v4.1 annot-version=v4.1 ATGGACAACAAGGCACCTGACAATGGAGAGTTTAGCTTTGCTAGCAATACTCCTAGGAGCACTGGACGGAAAGGGCTGCCTAAAATCCAGACACAAGATC ATAACAAGAAGGCAAACGATGTGTGTCATGATGACAGTGGAACACCAGTGAAAGCCAAAACGATCGATGAACTCCATTCTCTACAGAGGAAAAAATCAGC ACCCACCACTCCCATCAAGGGAGCTCAGGGTGCTTTCAATGCTATCTCTGAAGAAGAACGCCAGAAACAGCAACTCCAGTCCATCAGTGCTTCCTTGGCA TCGCTGATGAGAGAGACAGGGCCAAAGTTAGTGAAAGGGGACCCGGCAAGGAAGGGAGAGGGGCAACAAATTGCACATCATCATCATTATACGCCCACCA TCAGCGCTACAGACAGTTCTCTCAAGTTTACCCATTACCTCCACAATCTTTCTCCTGCTGAACTCTATGAACAAGCAATTAAGTACGAGAAAGGTTCATT CATAGCATCATCTGGCGCCTTAGCTACACTTTCCGGGGCAAAAACAGGCAGGTCACCAAGAGATAAACGTGTTGTCAGGGATGAAACCACCGAAGATGAT CTTTGGTGGGGAAAGGGCTCACCTAATATTGAAATGGATGAACATACTTTCATGGTTAACAGAGAAAGAGCTGTCGATTATTTGAACTCGCTGGACAAGG TCTTTGTAAATGACCAGTTCCTGAATTGGGACCCTGAACACAGAATTAAAGTTCGTATCGTTTCAGCCAGGGCTTACCATTCCTTGTTCATGCACAACAT GTGTATCCGACCCACTCCTGAAGAGCTAGAGAACTTCGGGACTCCGGACTTCACTATATACAACGCCGGACAGTTCCCATGTAACCGTTACACCCATTAC ATGACTTCCTCTACTAGCATAGACATCAATCTTGCTAGGAAGGAGATGGTCATCCTTGGCACCCAATATGCTGGGGAAATGAAGAAGGGTCTATTCGGGG TAATGCATTATCTCATGCCTAAGCGTCAAATCCTCTCCCTTCACTCTGGCTGCAATATGGGGAAAGATGGGGATGTTGCCCTCTTCTTTGGATTATCAGG TACCGGGAAGACAACTCTGTCCACAGATCATAATAGGTATTTAATTGGAGACGACGAACATTGCTGGAGTGAGAATGGTGTGTCAAACATAGAAGGCGGT TGCTATGCCAAGTGCATTGATCTCTCTCGAGAGAAGGAGCCCGATATTTGGAATGCCATCAAGTTTGGGACTGTATTGGAGAATGTGGTGTTTGATGAGC ATACTCGAGAAGTGGATTACGTGGACAGCTCAGTTACAGAAAACACGCGAGCAGCATATCCTATTGATTACATTCCAAATGCTAAGATACCGTGCGTTGG TCCCCATCCGAAGAACATCATTCTACTGGCATGTGATGCATTTGGCGTGCTCCCACCTGTGAGCAAGCTGAGCTTGGCACAGACCATGTATCACTTTATC AGTGGTTATACAGCTCTGGTAGCCGGGACAGAGGATGGTATTAAGGAGCCACAGGCAACATTTTCAGCCTGCTTTGGTGCAGCATTTATAATGATGCATC CTACCAAGTATGCTGCCATGCTGTCTGAAAAGATGCAGAAACATGGGGCTACAGGATGGCTTGTCAATACCGGTTGGTCAGGTGGAAGTTATGGATCCGG AAAACGTATCAAGTTGGCATACACTCGGAGGATCATCGATGCAATCCACTCCGGTAGCCTTTTGAATGCTAGCTATAAAAAGACTGAAGTTTTTGGTCTC GAAATCCCAACTGAGATTGAGGGCGTGCCTTCAGAAATCTTGGATCCTGTCAACACTTGGACGGACAAGAATGCATACAAGGATACCCAGTTGAAGCTGG CTGGTCTTTTCAAGAATAATTTCGCGGTGTTCACAAATTACAAGATTGGAAAGAACAGCATGCTGACCGAGGAGATTCTGGCAGCTGGTCCTAATTACTA G
AA sequence Show only first row Show all	>Potri.002G107700.15 pacid=42778599 polypeptide=Potri.002G107700.15.p locus=Potri.002G107700 ID=Potri.002G107700.15.v4.1 annot-version=v4.1 MDNKAPDNGEFSFASNTPRSTGRKGLPKIQTQDHNKKANDVCHDDSGTPVKAKTIDELHSLQRKKSAPTTPIKGAQGAFNAISEEERQKQQLQSISASLA SLMRETGPKLVKGDPARKGEGQQIAHHHHYTPTISATDSSLKFTHYLHNLSPAELYEQAIKYEKGSFIASSGALATLSGAKTGRSPRDKRVVRDETTEDD LWWGKGSPNIEMDEHTFMVNRERAVDYLNSLDKVFVNDQFLNWDPEHRIKVRIVSARAYHSLFMHNMCIRPTPEELENFGTPDFTIYNAGQFPCNRYTHY MTSSTSIDINLARKEMVILGTQYAGEMKKGLFGVMHYLMPKRQILSLHSGCNMGKDGDVALFFGLSGTGKTTLSTDHNRYLIGDDEHCWSENGVSNIEGG CYAKCIDLSREKEPDIWNAIKFGTVLENVVFDEHTREVDYVDSSVTENTRAAYPIDYIPNAKIPCVGPHPKNIILLACDAFGVLPPVSKLSLAQTMYHFI SGYTALVAGTEDGIKEPQATFSACFGAAFIMMHPTKYAAMLSEKMQKHGATGWLVNTGWSGGSYGSGKRIKLAYTRRIIDAIHSGSLLNASYKKTEVFGL EIPTEIEGVPSEILDPVNTWTDKNAYKDTQLKLAGLFKNNFAVFTNYKIGKNSMLTEEILAAGPNY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37870		PCK1, PEPCK	phosphoenolpyruvate carboxykin...		Potri.002G107700 [exp]	0	1
AT4G38180	FAR1_related	FRS5	FAR1-related sequence 5 (.1)		Potri.016G058700 [exp]	3.87	0.8393
AT5G18140			Chaperone DnaJ-domain superfam...		Potri.013G058100 [exp]	5.09	0.8085
AT2G42760			unknown protein		Potri.006G129800 [exp]	6.32	0.7847
AT5G61760		ATIPK2BETA	ARABIDOPSIS THALIANA INOSITOL ...		Potri.012G111400 [exp]	7.74	0.7838
AT5G11720			Glycosyl hydrolases family 31 ...		Potri.011G154200 [exp]	9.21	0.7632
AT2G43010	bHLH	SRL2, PIF4, AtP...	phytochrome interacting factor...		Potri.002G055400 [exp]	13.26	0.7855
AT2G37900			Major facilitator superfamily ...		Potri.016G103500 [exp]	38.88	0.7359
AT3G62910		APG3	ALBINO AND PALE GREEN, Peptide...		Potri.014G133400 [exp]	39.03	0.7718	APG3.1
AT2G35840			Sucrose-6F-phosphate phosphohy...		Potri.006G199800 [exp]	40.24	0.7739	Pt-SPP1.1
AT2G39190		ATATH8	Protein kinase superfamily pro...		Potri.010G221000 [exp]	45.98	0.7768

Compare expression of checked genes

Potri.002G107700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.