Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58290 756 / 0 AtHEMA1, HEMA1 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) AT1G09940 736 / 0 HEMA2 Glutamyl-tRNA reductase family protein (.1) AT2G31250 579 / 0 HEMA3 Glutamyl-tRNA reductase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G080600 [exp] 653 / 0 AT1G58290 672 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Potri.001G286400 [exp] 648 / 0 AT1G58290 666 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028226 [exp] 811 / 0 AT1G58290 801 / 0.0 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1) Lus10042932 [exp] 392 / 3e-133 AT1G09940 433 / 4e-150 Glutamyl-tRNA reductase family protein (.1) Lus10042931 [exp] 371 / 2e-127 AT1G58290 337 / 2e-114 Arabidopsis thaliana hemA 1, Glutamyl-tRNA reductase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00745 [poplar] [flax] GlutR_dimer Glutamyl-tRNAGlu reductase, dimerisation domain CL0063 [poplar] [flax] NADP_Rossmann PF03807 [poplar] [flax] F420_oxidored NADP oxidoreductase coenzyme F420-dependent CL0063 [poplar] [flax] PF05201 [poplar] [flax] GlutR_N Glutamyl-tRNAGlu reductase, N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G107800.1 pacid=42779003 polypeptide=Potri.002G107800.1.p locus=Potri.002G107800 ID=Potri.002G107800.1.v4.1 annot-version=v4.1 ATGGCTGTTGCGAGTGGATTTGCGACAACTATTTCGGGTGCCAAAATGGAGACATTGCTATCGTTGAATTCTTCTTCTTATTCTACATCATCTGTATTCT TTGTTTTGCCACAGGATATGCGGGTTTCTTGCAAACCCCCTAGAAATAATTATAGGAGAAGAGTCTTGCTGAATAATAAAGGAGGGGGGGTGAGATGCGA GGTTTCTACTGCTTCGAATGATGTTGCTCTTGCTGCTGAAATTGACCCGGCTAGAGTCTCTAGCATGTCTGCTCTTGAACAGCTCAAGACCTCTGCTGTT GACAGATATACAAAAGAGAGGGCTAGCATCGTGGTAATTGGGCTTAGTATTCACACCGCACCAGTTGAAATGCGCGAAAAGCTTGCCATTCCAGAAGCTG AATGGCCCCGAGCTATCGGGGAGCTTTGTGGTTTAAATCACATAGAAGAAGCCGCTGTGCTTAGCACTTGCAATAGAATGGAAATATATGTTGTTGCCCT ATCTCAGCATCGCGGGGTCAAAGAAGTGACTGAATGGATGTCAAAGACAAGTGGTGTCCCTGTTTCTGAAATTTGTGAACACCGGTTTTTGCTGTACAAT AATGATGCTACACAGCATCTGTTTGAAGTATCTGCTGGTCTTGACTCGCTTGTTCTTGGAGAAGGTCAGATTCTTGCTCAAGTTAAACAAGTTGTCAAAG GTGGCCAAGGGGTTGTTGGTTTCGGGAGGAACATTAGTGGGCTGTTTAAGCATGCAATCACTGTTGGAAAGCGGGTTAGAACCGAGACAAATATCGCTGC TGGGGCTGTTTCCGTGAGCTCAGCTGCTGTTGAACTAGCTTTGATGAAGCTCCCTGAATCTTCTCATGCCAGTGCCAGAATGTTGGTAATTGGGGCAGGG AAGATGGGGAAGCTTGTCATTAAACACTTAGTAGCAAAAGGTTGCACAAAGATGGTAGTTGTAAACAGAACAGGGGATAGAGTTGCAGCCATCCGCGAGG AGTTGAAGGATGTTGAGATCATATACAAGCCCTTTCCAGATATGCTAACTTGCGCTGCTGAAGCTGATGTTGTTTTCACAAGCACATCATCAGAAACTCC ATTATTTGTGAGAGACGATGTTAAAGATCTTCCTCCTGTTGGTTCAGAAGTTGGGGGTTCGAGGCTATTTGTTGATATCTCTGTTCCCAGAAATGTGGGT TCATGTGTCAGCGACCTTGAAAATGTGCGAGTTTACAATGTTGATGACCTGAAGGAGGTTGTGGCTGCTAACAAAGAAGACCGCCTGCGAAAAGCAATGG AAGCTCAGGCAATCATTAATGAAGAATCAAAACAATTTGAAGCCTGGAGGGATTCACTGGAGACTGTTCCTACCATCAAGAAATTGAGGGCTTATGCTGA GAGAATCAGACTTGCAGAGCTGGAGAAATGCCTTTCAAAAATGGGTGATGATATCTCAAAGAAAACAAGGAGAGCAGTGGATGATCTTAGCCGTGGTATA GTGAACAAGCTCCTTCATGGTCCGATGCAGCACCTGAGATGTGATGGTAGTGACAGCCGGACTCTCAGCGAGACCCTTGAGAATATGCATGCTCTTAACA GAATGTTCAGCCTCGAGACAGAAGTGGCTGTTTTGGAACAAAAGATTCGAGCCAAACAAAGCCAGAAGTAA
AA sequence Show only first row Show all	>Potri.002G107800.1 pacid=42779003 polypeptide=Potri.002G107800.1.p locus=Potri.002G107800 ID=Potri.002G107800.1.v4.1 annot-version=v4.1 MAVASGFATTISGAKMETLLSLNSSSYSTSSVFFVLPQDMRVSCKPPRNNYRRRVLLNNKGGGVRCEVSTASNDVALAAEIDPARVSSMSALEQLKTSAV DRYTKERASIVVIGLSIHTAPVEMREKLAIPEAEWPRAIGELCGLNHIEEAAVLSTCNRMEIYVVALSQHRGVKEVTEWMSKTSGVPVSEICEHRFLLYN NDATQHLFEVSAGLDSLVLGEGQILAQVKQVVKGGQGVVGFGRNISGLFKHAITVGKRVRTETNIAAGAVSVSSAAVELALMKLPESSHASARMLVIGAG KMGKLVIKHLVAKGCTKMVVVNRTGDRVAAIREELKDVEIIYKPFPDMLTCAAEADVVFTSTSSETPLFVRDDVKDLPPVGSEVGGSRLFVDISVPRNVG SCVSDLENVRVYNVDDLKEVVAANKEDRLRKAMEAQAIINEESKQFEAWRDSLETVPTIKKLRAYAERIRLAELEKCLSKMGDDISKKTRRAVDDLSRGI VNKLLHGPMQHLRCDGSDSRTLSETLENMHALNRMFSLETEVAVLEQKIRAKQSQK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58290		AtHEMA1, HEMA1	Arabidopsis thaliana hemA 1, G...		Potri.002G107800 [exp]	0	1
AT1G75690		LQY1	LOW QUANTUM YIELD OF PHOTOSYST...		Potri.002G023600 [exp]	2.44	0.9773
AT3G47430		PEX11B	peroxin 11B (.1)		Potri.001G124400 [exp]	2.64	0.9770
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Potri.001G160400 [exp]	3.74	0.9817	ZIP4.2
AT5G66600			Protein of unknown function, D...		Potri.009G111100 [exp]	4.12	0.9708
AT1G15820		CP24, LHCB6	light harvesting complex photo...		Potri.003G020400 [exp]	10.00	0.9724
AT1G64720		CP5	Polyketide cyclase/dehydrase a...		Potri.001G450100 [exp]	10.53	0.9628
AT2G41940	C2H2ZnF	ZFP8	zinc finger protein 8 (.1)		Potri.016G060600 [exp]	10.95	0.9781
AT5G51720			2 iron, 2 sulfur cluster bindi...		Potri.012G130600 [exp]	12.24	0.9666
AT2G06520		PSBX	photosystem II subunit X (.1)		Potri.006G144000 [exp]	14.69	0.9750
AT5G59320		LTP3	lipid transfer protein 3 (.1)		Potri.016G135500 [exp]	16.00	0.9638

Compare expression of checked genes

Potri.002G107800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.