Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49665 675 / 0 Zinc finger (C3HC4-type RING finger) family protein (.1) AT2G22680 438 / 6e-144 WAVH1 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G37890 401 / 3e-129 EDA40 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) AT5G65683 368 / 3e-116 WAVH2 WAV3 homolog 2, Zinc finger (C3HC4-type RING finger) family protein (.1) AT3G54780 267 / 9e-79 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) AT2G38970 201 / 7e-55 Zinc finger (C3HC4-type RING finger) family protein (.1) AT5G60710 188 / 2e-50 Zinc finger (C3HC4-type RING finger) family protein (.1) AT1G08050 186 / 8e-50 Zinc finger (C3HC4-type RING finger) family protein (.1) AT4G35840 46 / 3e-05 RING/U-box superfamily protein (.1) AT2G17730 46 / 4e-05 NIP2 NEP-interacting protein 2 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G223766 [exp] 217 / 2e-60 AT2G38970 892 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.008G038450 [exp] 207 / 5e-57 AT2G38970 889 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.009G010350 [exp] 183 / 1e-48 AT5G60710 763 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.001G082150 [exp] 173 / 3e-45 AT2G38970 466 / 4e-156 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.003G148400 [exp] 164 / 3e-42 AT2G38970 475 / 3e-159 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.006G000900 [exp] 97 / 8e-21 AT3G54780 147 / 1e-37 Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2), Zinc finger (C3HC4-type RING finger) family protein (.3) Potri.016G001300 [exp] 96 / 2e-20 AT5G60710 156 / 1e-40 Zinc finger (C3HC4-type RING finger) family protein (.1) Potri.004G122000 [exp] 47 / 6e-06 AT1G26800 94 / 1e-24 RING/U-box superfamily protein (.1) Potri.009G034700 [exp] 45 / 0.0001 AT3G55530 333 / 1e-115 SALT- AND DROUGHT-INDUCED RING FINGER1, RING/U-box superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003485 [exp] 511 / 3e-171 AT2G22680 522 / 9e-177 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10042930 [exp] 379 / 4e-121 AT5G49665 397 / 7e-129 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10028224 [exp] 322 / 6e-104 AT5G49665 286 / 5e-91 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10039635 [exp] 254 / 9e-78 AT4G37890 290 / 1e-92 embryo sac development arrest 40, Zinc finger (C3HC4-type RING finger) family protein (.1), Zinc finger (C3HC4-type RING finger) family protein (.2) Lus10039634 [exp] 246 / 7e-74 AT2G22680 268 / 8e-83 WAV3 homolog 1, Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 194 / 4e-52 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10040413 [exp] 190 / 5e-51 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10041321 [exp] 179 / 4e-47 AT5G60710 730 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10016102 [exp] 176 / 5e-46 AT5G60710 764 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10021458 [exp] 172 / 1e-44 AT5G60710 738 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0128 [poplar] [flax] vWA-like PF00092 [poplar] [flax] VWA von Willebrand factor type A domain CL0229 [poplar] [flax] RING PF17123 [poplar] [flax] zf-RING_11 RING-like zinc finger
Representative CDS sequence Show only first row Show all	>Potri.002G107902.1 pacid=42777088 polypeptide=Potri.002G107902.1.p locus=Potri.002G107902 ID=Potri.002G107902.1.v4.1 annot-version=v4.1 ATGGGTACCGGTTGGAGAAGAGCTTTTTGCACAACAATTCCTAGAGACCGAGAAACCACAATCTCTGATAAGCAACAAACCACAAGTCCAAGTCCAAGTC CTAGCCCCAGAAGGTGTGCAAAGCTAGGATTTTTCTCCAGTGCAAGCAACCCCAGTACGCCTCGTTTGCCGTCTCAAAATCCCAACCTGCGTTGCCGCAC AAATACTGTAGACTCTCCTTCAACAAACGAGAGCCCCGCCTTCCATTGCAAAACCGCACCGAAAATAACCACCACCACTACTAAAAACCCCAAATCACTA CTGAGCTCAAATCCATCTTCTCCTAGATCTCCTCTTAAATTGTCTCTCTTCAAGAATAGCTTCAAATTCAGAAGTAGCTGCGGAATCTGCTTGAATAGCG TAAAAAGAGGTCAAGGCACAGCAATTTACACAGCAGAGTGTGCACATGCCTTCCACTTCCCTTGCATAGCTTCCTATGTTCGTAAGCATGGCAGTCTTGT GTGCCCTGTCTGCAACTCTACCTGGAAAGATGTTCCTTTACTTGCCATCCACAAAAACCTCCACCAAAATGACAATAATTTAGAAGAAGACCCCAGCACC AACACCATCACCAAAGTTGAAGAGAAAAAGGTTGTCATTGTAGAATCATCACCAAGAGCCATAAAAACCCCAACCACACCCACACCCACCCCACAACAAC CACAACCAAGAACACCAAAATATTCCGATTCAAGATCCTATGATGACGATGAACCATTATTATCTCCAACTGCCGGTGCCAGATTCAACCCAATTCCTGA AGCTGACGAAAGTGTGGATGACGATGATGACGGTGTTGAAGAATTTCAAGGATTCTTCCCCACCCATTCTACTTCAGTCGTCAAATCGGATGAAGTTTCA ATCAATGACCGAGATTTTTCGAGGAATGTTCAGGTCAGATTATTGCCAGAAGTAGCTGTCATATCTGTAGGCCGCGGGTATGAAACTTATGCAGTGGCTC TGAGAGTGAAAGCTCCACCACCATTGCCATCACTAACCACACGCAACAGTTCAAATTCAACAGCATCTCTTTTAGACCCTTCCCGTCGAGCACCCATTGA TTTGATAACGGTTCTTGATGTTAGTGCCAGCATGACCGGGGCTAAGTTGCAAATGCTGAAACGCGCCATGCGTCTGGTTATTTCTTCTCTTGGCTCGGCT GATCGACTTTCTATTGTGGCCTTTTCGAGTAGTCCTAAAAGGCTATTGCCTTTGAAGAGAATGACGCCCAATGGACAGCGGTCAGCTCGGCGCATTATTG ACCGACTTGTTTGTGGTCAAGGCAGTAGTGTTGGTGAAGCTTTGAGGAAAGCGACTAAGGTTCTTGAAGACAGGAGGGAGAGAAATCCTGTGGCCAGCAT CATGTTATTATCAGACGGTCAGGACGAGAGGGTATCGGATAATAACTCAAATCATAGGCACACGTCTATCCACAAGTCGTCTACACGCTTTGCACATATC GAGATCCCGGTTCATTCATTTGGGTTTGGTCAAAGCGGTGGCAACAGCCAGGAGCCGGCTGAGGATGCCTTTGCTAAATGTGTTGGTGGTTTATTGAGTG TTGTGGTGCAGGATTTAAGAATTCAGCTTGGATTCGCCTCCAGCTCCGCTCCTGCTGAAATTGTAGCGGTTTATCCTTGCAATTCGAGACCAAATGTGCT CGGTTCGGGTTCCGTTCGGCTTGGCGATTTGTACGCCGAAGAAGAGAGGGAGCTGTTAGTGGAGCTGAGAGTTCCACAATCGGCTGTTGGGTCCCACCAT GTGATGTCTGCTCGATGCCTTTACAAAGATCCCGCCACGCAAGAGGTCGTGTATGACCGTGATCAGTCTCTACTAGTCCCACGGCCCCACGCTCTCCCGT CAACAGGCCCTAAGATCCAACATCTGAGTAATTTGTTTATCACAACTCGAGCCTTGGCCGAGGCTAGGCGGCTCGTGGAGCATAATGAGTTTACAAGTGC ACATCACTTGCTCGTATCATCTCGAGCTTTGATATTGCAGTCTAGTTTAATATCAGCTGACGAGTATGTTAGGAGGTTGGAGGCTGAATTGGCAGAGGTG CAATGGCGGAAGCAGCATCATCAATTGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAAATGATGATGCAACGGCGGAGAGAAATGGTTACGATGGATGAGA ATGGCGAGCCACTTACCCCCACTTCAGCTTGGAGGGCGGCTGAGAAGCTGGCTAAAGTAGCCACAATGAAAAAGTCGTTGAATAGAGTCAGTGACTTGCA CGGCTTTGAAAATGCTAGATTTTAA
AA sequence Show only first row Show all	>Potri.002G107902.1 pacid=42777088 polypeptide=Potri.002G107902.1.p locus=Potri.002G107902 ID=Potri.002G107902.1.v4.1 annot-version=v4.1 MGTGWRRAFCTTIPRDRETTISDKQQTTSPSPSPSPRRCAKLGFFSSASNPSTPRLPSQNPNLRCRTNTVDSPSTNESPAFHCKTAPKITTTTTKNPKSL LSSNPSSPRSPLKLSLFKNSFKFRSSCGICLNSVKRGQGTAIYTAECAHAFHFPCIASYVRKHGSLVCPVCNSTWKDVPLLAIHKNLHQNDNNLEEDPST NTITKVEEKKVVIVESSPRAIKTPTTPTPTPQQPQPRTPKYSDSRSYDDDEPLLSPTAGARFNPIPEADESVDDDDDGVEEFQGFFPTHSTSVVKSDEVS INDRDFSRNVQVRLLPEVAVISVGRGYETYAVALRVKAPPPLPSLTTRNSSNSTASLLDPSRRAPIDLITVLDVSASMTGAKLQMLKRAMRLVISSLGSA DRLSIVAFSSSPKRLLPLKRMTPNGQRSARRIIDRLVCGQGSSVGEALRKATKVLEDRRERNPVASIMLLSDGQDERVSDNNSNHRHTSIHKSSTRFAHI EIPVHSFGFGQSGGNSQEPAEDAFAKCVGGLLSVVVQDLRIQLGFASSSAPAEIVAVYPCNSRPNVLGSGSVRLGDLYAEEERELLVELRVPQSAVGSHH VMSARCLYKDPATQEVVYDRDQSLLVPRPHALPSTGPKIQHLSNLFITTRALAEARRLVEHNEFTSAHHLLVSSRALILQSSLISADEYVRRLEAELAEV QWRKQHHQLQQQQQQQQQQMMMQRRREMVTMDENGEPLTPTSAWRAAEKLAKVATMKKSLNRVSDLHGFENARF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49665			Zinc finger (C3HC4-type RING f...		Potri.002G107902 [exp]	0	1
AT1G55610		BRL1	BRI1 like (.1.2)		Potri.011G169600 [exp]	11.66	0.6115
AT5G04770		CAT6, ATCAT6	ARABIDOPSIS THALIANA CATIONIC ...		Potri.003G083700 [exp]	13.74	0.5613
AT4G22190			unknown protein		Potri.004G003900 [exp]	17.02	0.5561
AT1G75590			SAUR-like auxin-responsive pro...		Potri.005G237000 [exp]	25.37	0.5450
AT5G09760			Plant invertase/pectin methyle...		Potri.007G107300 [exp]	32.40	0.5277
AT2G44730	Trihelix		Alcohol dehydrogenase transcri...		Potri.003G083800 [exp]	36.08	0.5773
AT2G37960			unknown protein		Potri.016G109100 [exp]	45.95	0.5235
AT1G07630		PLL5	pol-like 5 (.1)		Potri.009G030600 [exp]	63.03	0.5294
AT3G07660			Kinase-related protein of unkn...		Potri.002G217000 [exp]	64.35	0.5425
AT3G01516			unknown protein		Potri.001G349700 [exp]	67.52	0.5421

Compare expression of checked genes

Potri.002G107902 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.