Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65640 233 / 2e-74 bHLH bHLH093 beta HLH protein 93 (.1.2) AT5G10570 205 / 1e-63 bHLH bHLH061 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G12860 117 / 2e-29 bHLH SCRM2, ICE2, bHLH033 SCREAM 2, INDUCER OF CBF EXPRESSION 2, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G26744 115 / 1e-28 bHLH SCRM, ATICE1, ICE1, bHLH116 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) AT2G16910 72 / 8e-14 bHLH AMS, bHLH021 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G46510 65 / 2e-11 bHLH ATAIB, bHLH107, bHLH017, INU1, JAM1, MYL1 ABA-inducible BHLH-type transcription factor (.1) AT4G29930 62 / 2e-11 bHLH bHLH027 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT1G63650 57 / 1e-08 bHLH EGL1, ATMYC-2, EGL3 ENHANCER OF GLABRA 3, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT4G17880 56 / 3e-08 bHLH bHLH004, MYC4 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) AT4G09820 54 / 1e-07 bHLH BHLH42, TT8, bHLH042 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G105200 [exp] 120 / 4e-30 AT3G26744 323 / 1e-104 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.012G106000 [exp] 119 / 2e-29 AT3G26744 339 / 9e-111 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Potri.009G136300 [exp] 77 / 2e-15 AT2G16910 461 / 1e-156 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G147300 [exp] 67 / 6e-12 AT4G00870 209 / 1e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G189600 [exp] 65 / 2e-11 AT1G10610 223 / 3e-67 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G041500 [exp] 61 / 8e-11 AT2G16910 109 / 7e-28 ABORTED MICROSPORES, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G142200 [exp] 61 / 5e-10 AT1G32640 604 / 0.0 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Potri.006G074900 [exp] 60 / 5e-10 AT5G57150 200 / 3e-64 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.006G074700 [exp] 59 / 5e-10 AT5G57150 175 / 2e-54 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039631 [exp] 199 / 5e-62 AT5G65640 230 / 3e-74 beta HLH protein 93 (.1.2) Lus10002160 [exp] 192 / 2e-59 AT5G65640 233 / 5e-75 beta HLH protein 93 (.1.2) Lus10043199 [exp] 113 / 2e-27 AT3G26744 387 / 1e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10032542 [exp] 113 / 2e-27 AT3G26744 386 / 6e-129 SCREAM, A. THALIANA INDUCER OF CBP EXPRESSION 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.4) Lus10005999 [exp] 60 / 1e-09 AT1G32640 268 / 3e-85 JASMONATE INSENSITIVE 1, Basic helix-loop-helix (bHLH) DNA-binding family protein (.1) Lus10042572 [exp] 57 / 1e-09 AT4G09820 156 / 1e-45 TRANSPARENT TESTA 8, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007618 [exp] 57 / 2e-09 AT4G21330 141 / 2e-42 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006951 [exp] 57 / 3e-09 AT5G57150 243 / 2e-81 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018395 [exp] 57 / 5e-09 AT4G21330 131 / 1e-37 DYSFUNCTIONAL TAPETUM 1, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10004575 [exp] 57 / 8e-09 AT4G17880 445 / 9e-152 Basic helix-loop-helix (bHLH) DNA-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G108400.1 pacid=42780058 polypeptide=Potri.002G108400.1.p locus=Potri.002G108400 ID=Potri.002G108400.1.v4.1 annot-version=v4.1 ATGGAAATTAATGGACATGATTTCTTAGAGGAGTTAATAGCTCTAAGTAGGGAATCTTGGCAACCCACTCCAAATTATCCATCAGAAATGAATGAGCTTT TCTCTGGTAGCTTTAACCATGGTTGCTTTGAAGAAATCCCAGCTACACTCCCACAAACTTCTTTCTGTCCTGAAGGATTAATTTCATCTCCTCTTAAACA AGACTTCAACAACTACTACTTTAATGAAGTCTTCTGCCCATTTGGTGATGAGTTCTCAGCACCACAGTTCACAGATGAGTTCTCTTCAGCCCCACAATTC ACCGATTCTTCCTATAACACGCTTGACACACCACCATTTCCTGTTCAAGACGATACTCCAATGTCCATGATGGAAGATGAGGAGCTGGGTCTGCTTGCTA ATGATCAACAGAATTTGCAGATGCAGGGTACTTGCAAAGTTGAGCCCATTCAGTCGCCGGAGGTGTCGGCTTTCAATGCTGGTATCTGTCCAGAAAGAAA GATTAGAGGCAAGAAGATGGAGGGGCAACCATCAAAGAACCTAATGGCCGAGAGAAGGCGAAGAAAGAGGTTAAATGACCGGCTTTCAATGCTAAGATCA ATTGTTCCTAAAATCAGCAAGATGGACAGAACATCAATACTTGGAGACACAATAGATTATATGAAGGAACTATTGGAGAGAATCAACAGCTTGCAACAAG AGATTGAAGTGGGTTCAGAGGAGTTGAAGATGATTAGCATTTTCAAGGACACAAAACCTAATGAAATTGTTGTGAGAAATTCACCGAAGTTTGAAGTGGA AAGAAGAAATGAGGATACAAGGATTGATATTTGCTGTGCAACAAAGCCAGGGTTATTGCTATCATCAGTAACAACATTAGAAACATTAGGCCTTGAGATT CAGCAGTGTGTGATTAGTTGTTTCAATGACTTTACAATGCAAGCTTCTTGCTCAGAGGAATTGGAGCAGAGAACACTAATAAGTTCTGAACACATAAAAC AGGCCTTGTTTAAAAATGCAGGATATGGAGGGAGATGCCTGTAG
AA sequence Show only first row Show all	>Potri.002G108400.1 pacid=42780058 polypeptide=Potri.002G108400.1.p locus=Potri.002G108400 ID=Potri.002G108400.1.v4.1 annot-version=v4.1 MEINGHDFLEELIALSRESWQPTPNYPSEMNELFSGSFNHGCFEEIPATLPQTSFCPEGLISSPLKQDFNNYYFNEVFCPFGDEFSAPQFTDEFSSAPQF TDSSYNTLDTPPFPVQDDTPMSMMEDEELGLLANDQQNLQMQGTCKVEPIQSPEVSAFNAGICPERKIRGKKMEGQPSKNLMAERRRRKRLNDRLSMLRS IVPKISKMDRTSILGDTIDYMKELLERINSLQQEIEVGSEELKMISIFKDTKPNEIVVRNSPKFEVERRNEDTRIDICCATKPGLLLSSVTTLETLGLEI QQCVISCFNDFTMQASCSEELEQRTLISSEHIKQALFKNAGYGGRCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65640	bHLH	bHLH093	beta HLH protein 93 (.1.2)		Potri.002G108400 [exp]	0	1
AT1G21460		SWEET1, AtSWEET...	Nodulin MtN3 family protein (....		Potri.002G072600 [exp]	4.12	0.6985
AT1G14550			Peroxidase superfamily protein...		Potri.010G236870 [exp]	5.65	0.6501
AT1G14550			Peroxidase superfamily protein...		Potri.010G236900 [exp]	7.54	0.6621
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.010G172400 [exp]	10.72	0.6188
AT5G14980			alpha/beta-Hydrolases superfam...		Potri.001G466700 [exp]	17.00	0.5770
AT1G14550			Peroxidase superfamily protein...		Potri.010G236890 [exp]	19.97	0.6101
AT3G03770			Leucine-rich repeat protein ki...		Potri.008G014300 [exp]	21.93	0.5843
AT5G38410			Ribulose bisphosphate carboxyl...		Potri.018G091401 [exp]	22.71	0.6134
AT3G49120		PRX34, PRXCB, A...	PEROXIDASE 34, ARABIDOPSIS THA...		Potri.001G011300 [exp]	30.16	0.5902
AT5G02530			RNA-binding (RRM/RBD/RNP motif...		Potri.008G052601 [exp]	31.52	0.5832

Compare expression of checked genes

Potri.002G108400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.