Plant FIBer expression Database

Potri.002G108500 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64460 411 / 3e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
AT1G58280 409 / 7e-144 Phosphoglycerate mutase family protein (.1.2.3.4)
AT2G17280 388 / 2e-136 Phosphoglycerate mutase family protein (.1.2)
AT1G09935 259 / 5e-86 Phosphoglycerate mutase family protein (.1)
AT1G09932 226 / 6e-73 Phosphoglycerate mutase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G080300
[exp]
421 / 6e-149 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.001G286000
[exp]
409 / 2e-144 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.002G108600
[exp]
311 / 1e-106 AT5G64460 298 / 3e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10032819
[exp]
426 / 4e-151 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10020467
[exp]
382 / 1e-133 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10007093
[exp]
375 / 8e-131 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10032821
[exp]
346 / 2e-119 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4)
Lus10032820
[exp]
243 / 5e-80 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2)
Lus10001381
[exp]
71 / 3e-15 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00300 His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence
>Potri.002G108500.1 pacid=42780038 polypeptide=Potri.002G108500.1.p locus=Potri.002G108500 ID=Potri.002G108500.1.v4.1 annot-version=v4.1
ATGTCCATTCTATATAACACCCCTCTAATGCCTTTGCCATCACCGACGCTGCCTCTTTCTTTGAACAACAATCTCTCATTTACTGCTATTTCCTTCTCCA
TTTCAAAGCCTACACGTAACCTAAGACCACCACTACAACGTCACCCCTCTTCTCATCCTTCTTCTTTACCACGTTGTTTCTCTTCTCTGTCAGAAATGGA
TGGCACAGTTGGTCAATGTCTTTACCCACTACACCGCACTAAAACAATTCACCTGGTTAGGCACGCACAAGGGATTCACAACGTAGAAGGAGAAAAGGAC
CATAATGCTTATATGTCTGAAGAACTCTTTGATGCGCACCTTACCCCTCTAGGCTGGCGGCAGGTTGATAATCTGCGCAAGCACGTTTATGAATTTGGGA
TCAATAAGAAGATTGAATTGGTCATTGTTTCCCCTTTGTTAAGGACTATGCAAACAGCAGTCGGAGTATTTGGTGGGGAAGGGTACACGGATGGTATAAA
TGCCCCTCCATTGATGGTGGAAAATGCAGGGAAAAGTAACCATCCTGCAATTTCATGTTTACACTCTCCTCCATTTATTGCAGTTGAGCTTTGTCGAGAA
CATTTGGGAGTTCATCCATGTGATAGGAGAAGAAGCATCAGTGAGTACCGGTCCATATTTCCAGCAATTGATTTTTCATTGATTGAAAGTGATGAAGACA
TTTTGTGGAGGGCTGATATCAGAGAGAAGGATGAAGAAGTTGCAGCCAGGGGACAGAAGTTCTTGAAATGGTTGTGGACTCGAAAAGAGAAGGAGATTGC
AGTTGTTTCCCACAGTGGATTCTTATATCATACATTAAGTGCTTTTGGAAATTATTGTTATCCATCTGTGAAGAGTGAAATATGCATGCACTTTGCGAAT
TGTGAGCTTCGTTCAGTGGTCCTTGTTGATAGAGGTATGATAGGATCAGATACAGCAATAACTAATTATCCTGGAAAAAAACCTCAAGGGCTTGACCTTC
CAAGTGATTTGGCGGAAGAGATTAATCCGTCTTAA
AA sequence
>Potri.002G108500.1 pacid=42780038 polypeptide=Potri.002G108500.1.p locus=Potri.002G108500 ID=Potri.002G108500.1.v4.1 annot-version=v4.1
MSILYNTPLMPLPSPTLPLSLNNNLSFTAISFSISKPTRNLRPPLQRHPSSHPSSLPRCFSSLSEMDGTVGQCLYPLHRTKTIHLVRHAQGIHNVEGEKD
HNAYMSEELFDAHLTPLGWRQVDNLRKHVYEFGINKKIELVIVSPLLRTMQTAVGVFGGEGYTDGINAPPLMVENAGKSNHPAISCLHSPPFIAVELCRE
HLGVHPCDRRRSISEYRSIFPAIDFSLIESDEDILWRADIREKDEEVAARGQKFLKWLWTRKEKEIAVVSHSGFLYHTLSAFGNYCYPSVKSEICMHFAN
CELRSVVLVDRGMIGSDTAITNYPGKKPQGLDLPSDLAEEINPS

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64460 Phosphoglycerate mutase family... Potri.002G108500
[exp]
0 1
AT2G47820 unknown protein Potri.008G210200
[exp]
5.47 0.8711
AT3G03980 NAD(P)-binding Rossmann-fold s... Potri.013G059100
[exp]
6.63 0.8692
AT3G60800 DHHC-type zinc finger family p... Potri.001G117100
[exp]
7.34 0.8677
AT4G14430 PEC12, IBR10, E... DELTA\(3\), DELTA\(2\)-ENOYL C... Potri.010G073700
[exp]
8.71 0.8676
AT3G07560 APM2, PEX13 ABERRANT PEROXISOME MORPHOLOGY... Potri.014G197200
[exp]
9.53 0.8508
AT5G63030 GRXC1 glutaredoxin C1, Thioredoxin s... Potri.015G078900
[exp]
10.48 0.8422 PtrcGrx_C1.1
AT5G50920 CLPC1, CLPC, AT... HEAT SHOCK PROTEIN 93-V, DE-RE... Potri.012G105900
[exp]
10.67 0.8432 CLPC.1
AT4G32020 unknown protein Potri.018G022400
[exp]
12.84 0.8329
AT1G08410 P-loop containing nucleoside t... Potri.009G017000
[exp]
15.23 0.8378
AT1G78290 SRK2C, SNRK2-8,... SNF1-RELATED PROTEIN KINASE 2C... Potri.002G099700
[exp]
15.87 0.8381

Potri.002G108500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.