Plant FIBer expression Database

PGM.1 (Potri.002G108600) [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol PGM.1
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT5G64460 298 / 2e-102 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
AT1G58280 296 / 5e-101 Phosphoglycerate mutase family protein (.1.2.3.4)
AT2G17280 272 / 4e-92 Phosphoglycerate mutase family protein (.1.2)
AT1G09935 257 / 6e-87 Phosphoglycerate mutase family protein (.1)
AT1G09932 232 / 1e-76 Phosphoglycerate mutase family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G080300
[exp]
310 / 5e-107 AT5G64460 449 / 5e-161 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.002G108500
[exp]
311 / 1e-106 AT5G64460 412 / 2e-145 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Potri.001G286000
[exp]
306 / 1e-105 AT5G64460 438 / 9e-157 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10007093
[exp]
293 / 2e-100 AT5G64460 422 / 8e-151 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10020467
[exp]
293 / 4e-100 AT5G64460 435 / 1e-155 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10032820
[exp]
285 / 8e-98 AT2G17280 233 / 7e-77 Phosphoglycerate mutase family protein (.1.2)
Lus10032819
[exp]
284 / 9e-97 AT5G64460 386 / 2e-136 Phosphoglycerate mutase family protein (.1.2.3.4.5.6.7.8)
Lus10032821
[exp]
255 / 3e-85 AT1G58280 320 / 4e-110 Phosphoglycerate mutase family protein (.1.2.3.4)
Lus10001381
[exp]
50 / 7e-08 AT2G17280 74 / 3e-17 Phosphoglycerate mutase family protein (.1.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0071 His_phosphatase PF00300 His_Phos_1 Histidine phosphatase superfamily (branch 1)
Representative CDS sequence
>Potri.002G108600.1 pacid=42780117 polypeptide=Potri.002G108600.1.p locus=Potri.002G108600 ID=Potri.002G108600.1.v4.1 annot-version=v4.1
ATGGATGCCAATCCAGCTCTATTTCTGTACCCACTAGAGCATTCTAAAATCCTCCATCTGGTGAGGCATGCACAAGGAATCCACAACGTAGCAGGGGAGA
AAGATCATAATGCCCTGTTATCTCCTGAATATTTTGATGCCCATCTGTCTCCTTTGGGCTGGCAACAGGCGGGCAATCTTAGGAAGCAAATTTATGCATC
TGGACACCTTGAGAGGATTGATTTAGTCATCACTTCTCCTTTGTGCAGGGCCCTGCAAACCGCCATACAAGTCTTTGGTAGCGAAGGCCAGATAAATGGA
TCAAAGGAGGCAAATATAGACAATAGTGGGATATCAAGTCTCAAATGCCCACCAATTGTAGCATCTGAACTTTGTCGAGAACGTTTGGGAGTTCATCCAT
GTGACAAGAGGAGAACCATTAGCGAGAATCGGTCTCGTTTTCCTACAATTGATTTTTCATTGATAGAAAGTGATGAAGACATCTTGTGGAAGACTGATGC
TAGGGAGACCGATGAGGAAATTGCAGCCAGGGGCTTGAAGTTTATGAACTGGCTGTGGACACGGCCAGAGAAAGAAATTGCAATAGTTACTCACCATAGA
TTCTTGCAGCACACATTGAATGCTTTGGGAAATGATTTTCATCCATCAGTGAAAAACAAGATGTGCAAAAAATTCGAGAACTGTGAACTTCGTTCAATGA
TCATTGCTGATAAAGAATAG
AA sequence
>Potri.002G108600.1 pacid=42780117 polypeptide=Potri.002G108600.1.p locus=Potri.002G108600 ID=Potri.002G108600.1.v4.1 annot-version=v4.1
MDANPALFLYPLEHSKILHLVRHAQGIHNVAGEKDHNALLSPEYFDAHLSPLGWQQAGNLRKQIYASGHLERIDLVITSPLCRALQTAIQVFGSEGQING
SKEANIDNSGISSLKCPPIVASELCRERLGVHPCDKRRTISENRSRFPTIDFSLIESDEDILWKTDARETDEEIAARGLKFMNWLWTRPEKEIAIVTHHR
FLQHTLNALGNDFHPSVKNKMCKKFENCELRSMIIADKE

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT5G64460 Phosphoglycerate mutase family... Potri.002G108600
[exp]
0 1 PGM.1
AT3G53810 Concanavalin A-like lectin pro... Potri.009G035500
[exp]
1.73 0.8084
AT1G61250 SC3 secretory carrier 3 (.1.2) Potri.004G036700
[exp]
6.92 0.7888
AT3G62260 Protein phosphatase 2C family ... Potri.002G190400
[exp]
73.82 0.7773
AT2G14900 Gibberellin-regulated family p... Potri.009G092600
[exp]
123.00 0.7266
AT3G04720 HEL, PR-4, PR4 HEVEIN-LIKE, pathogenesis-rela... Potri.005G054000
[exp]
191.56 0.7417
Potri.007G042350
[exp]
242.79 0.6967
AT4G08850 Leucine-rich repeat receptor-l... Potri.002G008450
[exp]
264.62 0.6995

Potri.002G108600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.