Plant FIBer expression Database

Potri.002G108700 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G28670 501 / 5e-175 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10028219
[exp]
569 / 0 AT3G28670 479 / 1e-166 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
Lus10042926
[exp]
562 / 0 AT3G28670 484 / 2e-168 oxidoreductase, zinc-binding dehydrogenase family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF14778 ODR4-like Odorant response abnormal 4-like
Representative CDS sequence
>Potri.002G108700.1 pacid=42780003 polypeptide=Potri.002G108700.1.p locus=Potri.002G108700 ID=Potri.002G108700.1.v4.1 annot-version=v4.1
ATGGTGAAAGCAGTGATCGGAGACGAAACCCAACTAACTTCAGCCGAGGATCGCCTCAGCCAATCCGGTCTCACCTCTCAGGTGGGTTTGGTGATAGGAA
AACTTAGCTCCAAATTAGATCGTGGCTTCATTTTCGATTTGGTCCCCACCCCACCAAACGATGCAGGAGAATCAGCCTGTTCACTCCTCGAAACCACCAA
AGATGACAACAAGAGAAAGGGTTTCAAATCTAAATCACAACCCGCCGTTGATTCTTCTGCCTTGAACATCGATTCGGATTGGGTCGCTGAACATGCCCGT
CAGGTTTCAAGAATGTTAGTGGGTGGCATGAAGGTTATTGGTGTTTATGTTTGGGTTAGTGATAGTGCTTTCAAGAATTCAACTATAACACTTTTCCAGC
TTTTACAGACAGTGAAGGGAGTTGCAGAAGCTGCACCAGTTACTGAAACTGATTGGGATGAGAGATTGCTGATTCATATATGTTATAGTCCAAGGAGGTG
GACGTGCCGGAATTGTGTGCTGTCTTCGAATATCACTTCAAGTAGTATACGGCCATGTGATTTTAAAATGGGAAGGGTCTTAAGTTCCCTTCAGGCATTT
AGGTGTACATACAACTTCAAACTCAGATTGCCTGTAACTCATGAGAGTGCATCAAATGCCCAAGCATTGAGTTCAATTCTTCGTCATGTAATTTCTGTGC
ATGCTAAAGAGCTAATGGATGCAAAGGCTATGATTGATGGGAATTTGGTTGTTGGCGAAGAGCTATGCACAACTGATGGTACGCATGAAGTTGAATTGCT
CCTACCATTCACAAAGAATTCTTTGGTTGAAGCAAGCAGCCAGAAGGATGTTGCTGGTGTTCTTGTCTTTGGTGGATCTGTGTGCTCTTATGCATACTCA
AACTCAAAGGAACCAGTGATGCAGGCTGTTGCTGATATAAAGGATGATATCATCAGGAGTCTTCAAAGTAGACTTGATATCATCTGTGATGAAGCAGATG
AAGATCCAGATCCTATTGACATCGATGGCAAGGATTCAAGGGTAGAAAAACTGCCTGAGAAACCTGTTTCAAGACTTGTCTTGAACTCTTTGAGGAGAAC
ATGCTTTCTTTCATTTCCTCGAAGAGTCTTTGTTCCCTGGTTGGCTGGTACATTCATATGTGACTACCTGCAACCATCTGAGACAGTTGAGGTTTTAAAA
GAACATTGCGTTGAGTTGATGTCCATGGAAGCTCCAACTGATCCCTCGACGTATCTCCAACCAGAAGTTGAAGCTCCATCACTAAACACTGAATCTTTCT
GGGATGTTGCAGTTCCTAACCATTTCGCACCTGTTTCTTCTTTAGAGAAGAGTAGACAAGTCGACGTGAGTGTGGAAAGTAGCCGGCAATCTAATCAGCC
ATTTAATTTCAATGTCTTAGCTGCTGTTTGCCTCCTTCTCTTTGCAATCTTGGTTGGGTTTGTGCTTGCAAGGCAAAAATAG
AA sequence
>Potri.002G108700.1 pacid=42780003 polypeptide=Potri.002G108700.1.p locus=Potri.002G108700 ID=Potri.002G108700.1.v4.1 annot-version=v4.1
MVKAVIGDETQLTSAEDRLSQSGLTSQVGLVIGKLSSKLDRGFIFDLVPTPPNDAGESACSLLETTKDDNKRKGFKSKSQPAVDSSALNIDSDWVAEHAR
QVSRMLVGGMKVIGVYVWVSDSAFKNSTITLFQLLQTVKGVAEAAPVTETDWDERLLIHICYSPRRWTCRNCVLSSNITSSSIRPCDFKMGRVLSSLQAF
RCTYNFKLRLPVTHESASNAQALSSILRHVISVHAKELMDAKAMIDGNLVVGEELCTTDGTHEVELLLPFTKNSLVEASSQKDVAGVLVFGGSVCSYAYS
NSKEPVMQAVADIKDDIIRSLQSRLDIICDEADEDPDPIDIDGKDSRVEKLPEKPVSRLVLNSLRRTCFLSFPRRVFVPWLAGTFICDYLQPSETVEVLK
EHCVELMSMEAPTDPSTYLQPEVEAPSLNTESFWDVAVPNHFAPVSSLEKSRQVDVSVESSRQSNQPFNFNVLAAVCLLLFAILVGFVLARQK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT3G28670 oxidoreductase, zinc-binding d... Potri.002G108700
[exp]
0 1
Potri.003G098500
[exp]
14.83 0.8365
AT2G45140 PVA12 plant VAP homolog 12 (.1) Potri.010G031601
[exp]
23.57 0.8271
AT3G07230 wound-responsive protein-relat... Potri.014G191300
[exp]
28.03 0.8251
AT2G25737 Sulfite exporter TauE/SafE fam... Potri.018G037400
[exp]
33.13 0.8222
AT3G48260 WNK3 with no lysine (K) kinase 3 (.... Potri.012G086700
[exp]
33.39 0.6637 WNK3.2
Potri.012G026150
[exp]
35.77 0.8226
AT2G06925 ATSPLA2-ALPHA, ... PHOSPHOLIPASE A2-ALPHA, Phosph... Potri.012G049101
[exp]
39.49 0.8216
AT3G07040 RPS3, RPM1 RESISTANCE TO PSEUDOMONAS SYRI... Potri.015G118101
[exp]
41.23 0.7907
AT1G62680 Pentatricopeptide repeat (PPR)... Potri.019G099701
[exp]
44.89 0.8186
Potri.015G107050
[exp]
49.95 0.7340

Potri.002G108700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.