Plant FIBer expression Database

Potri.002G108900 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G22660 696 / 0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
AT4G37900 692 / 0 Protein of unknown function (duplicated DUF1399) (.1)
AT1G56230 121 / 5e-28 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
AT4G37682 53 / 8e-09 Protein of unknown function (DUF1399) (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.015G042800
[exp]
771 / 0 AT4G37900 795 / 0.0 Protein of unknown function (duplicated DUF1399) (.1)
Potri.013G013000
[exp]
133 / 7e-32 AT1G56230 777 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10019239
[exp]
701 / 0 AT2G22660 747 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
Lus10004273
[exp]
642 / 0 AT2G22660 679 / 0.0 Protein of unknown function (duplicated DUF1399) (.1), Protein of unknown function (duplicated DUF1399) (.2)
Lus10020675
[exp]
133 / 1e-31 AT1G56230 747 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
Lus10029871
[exp]
121 / 6e-28 AT1G56230 771 / 0.0 Protein of unknown function (DUF1399) (.1), Protein of unknown function (DUF1399) (.2)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF07173 GRDP-like Glycine-rich domain-containing protein-like
Representative CDS sequence
>Potri.002G108900.2 pacid=42777133 polypeptide=Potri.002G108900.2.p locus=Potri.002G108900 ID=Potri.002G108900.2.v4.1 annot-version=v4.1
ATGGAGAAGCAGCAAGAATTGGAGTGGGCTAAAGCACAGAAGATTGCAACAAATGTAGACCTTGTAGCTGCAGCTAAAAAGCAGTTGCGATTCCTTGCAG
AGGTTGATAGGCATCGGTACCTCTATGATGGCCCTTCCTTGGACCGGGCCATTCACAGGTACAAGTACTGTTGGCTTCCTTTGTTAGCCAAGCATGCTAA
GTCTCCCGTTACAAAAAGCCCTTTGGTTGCCCCGCTTGATTGTGAATGGATCTGGCATTGTCACAGGCTCAATCCGGTGTGCTACAGGAATGACTGTAAG
GAACTTTATGGGAGGATTCTCGGTACCTGGAATGTTGTATCTTCCACTCAGGCAGTTTGTAAGAAGCAAACTGAAGAATTCTGGAATAGAACCTATCCTA
CGGAACAATATGAACTGAATCCAAGCACCCAGTTAGTGGAGGGTGTTGGGGAAGCTATTCTAGGAGCCCAAAAAAGCACAGAATATGATCTAGTTTCAGC
TGTCAAAAGGCAGAGTTCTTTCTATTATCAGGTATCAAGTCCCCATATGAAAAATGATACCTTTCTTGAAGAAGCTGTAGCTAGATACAAGGGATTTCTG
TATTTAATCAAGAGAAACCAGGAGAGGTCCATCAGGCATTTCAGTGTTCCAACTTATGACGTTGACCTCATCTGGCATTCTCATCAACTACATCCTGTTT
CTTACTGTAAAGATCTGGTGGCAATAATAGGCAGGGTGCTAGAGCATGATGACACTGATTCTGATAGAAGTAAAGGTAAAAGGCTGGATACTGGGTTTTC
TGGGACCACTAAGCAGTGGGAGGAAACATTCGGTTCAAGATACTGGAAGGCAGGAGCTATGCATAGAAGCGATGCTCCATCTCCTCTCAAAATCAGTTTG
GGTGAACTAGACACTTCAAACAAGAATGATACTGCTTCCAATCAATATCAAAGTATCATTCAGCTTCCAAAGAAAAAGCTGATTGAGGTTATGGTGGAAA
TTGTGGAGGTTAGAGACTTACCAGCTGAGCATAACGGAGGCCTTTCCGTAATACTTAGTAAGAAACAGCCAGATTTGTATTTCAATGGCAGGAGAATGAG
TATCTTGTCCAAGGCAGGGAAGAAAGATGTCGCTGTTTTCCGATGTGAACCCACAGGAGAGCTCATCTTCAAACTTGTGTCCTATCCATCCTCTGTTTCA
CATATTGCAAGGCCTGAGAAAATATTGGGGACAGCATTAATCTCTCTACATGACCTCATGAAAACAGGTTCTCCTTTGTCAATTGAAAAATGGTTTGAAT
TGGTGCCAAATTCTGGAATTGTAGGTTCCAAGCCAGTCAATCTCTGGATTGCTCTCTCTTTCACTCCTCCAGTACAGGCACCATCATTGCTGCACATGGT
CCAGACTCGTCCATCCACAACATCTTGTTTCTTTCCCCTCTCTGGAAGTTTTCAACAAGATGAAACTTGGACATGCGTTGTGGATGAGGGTGGCAACAGG
ATCATCAACCTCCAGATGAGATATTCAAAGAAAGCGGAGGCCAAAGACAAAAAGGAAGTGATCGGCATGACCAGCTCCGGCGAAAGACTTGTTCTCGCAG
AGTTTGCTGGAACAGGATGGTCTTTGATGAATTCCAGCTGGTGGTTGCAACCTCATCAAATAATTACTGATGCTAGTCGGATCTTTGAGCTCACTGGTAG
CCATAAGGTGATCGTTTTTCCTGGTAGGAAACTGGAGTATGAAATCAAATGTGAGAAGCATAAAAGCGAACAAAATTTCATGACAGCTGTCAAATTTTCT
GCAGAATATCCTCATGGAAAAGCCGTGGCGCTGTTTGATTTGAAGTCTGCCTCTCTCAAGGTGAATGAAGAATGGCTTGGATTTCCCGGGATTTTATTAG
CTTTTCTACTCTCCGATACTCCGAGGAATGAGAGCAATGGACAATTCAATACCGATGGAGAGAGTGCAAAAGAAATGGACACTGATTCAAAGCAATATGC
AAATACAAGCTCTAAGGAAGACAAAACAACCAACCAAATTCAGGACATAGAAGATACTGCGAAAGCAACAACCCAAGAACCCTACAAATCTGGTGATGAA
TGTGATTGTGGTGTTGTGGCTCAAGTTGAGGTGATGGGTGGAAAAGGCACTGGAGTTGTTAAGAATGTCACAGGTGAAGAAAACCACAGTAATGGATCCA
AAGCAATAATAAACAGTGGAACATATTGCTCCAACTTACTTGGCCTTGTTGGTTCAGACTCTGCCAGTCATTTAATCCTAGAGGATGAAGCAAAGAGCGC
TCATTGTGGTGGATGTGGCTCATGTCATGGTGGTTGTGGAGGGTGTGGTTCCCAGACTGCCAGTTCTATATTCCAAGGGGATGCAGCAAACAGCCCTCAT
TGTGGTGGGTGTGGCTCATGTCATGGTGGTTGTGGAGGATGTGGCTCATGCCACGGTAGCAGTTGCGGCCAAGATCAGCAGTAA
AA sequence
>Potri.002G108900.2 pacid=42777133 polypeptide=Potri.002G108900.2.p locus=Potri.002G108900 ID=Potri.002G108900.2.v4.1 annot-version=v4.1
MEKQQELEWAKAQKIATNVDLVAAAKKQLRFLAEVDRHRYLYDGPSLDRAIHRYKYCWLPLLAKHAKSPVTKSPLVAPLDCEWIWHCHRLNPVCYRNDCK
ELYGRILGTWNVVSSTQAVCKKQTEEFWNRTYPTEQYELNPSTQLVEGVGEAILGAQKSTEYDLVSAVKRQSSFYYQVSSPHMKNDTFLEEAVARYKGFL
YLIKRNQERSIRHFSVPTYDVDLIWHSHQLHPVSYCKDLVAIIGRVLEHDDTDSDRSKGKRLDTGFSGTTKQWEETFGSRYWKAGAMHRSDAPSPLKISL
GELDTSNKNDTASNQYQSIIQLPKKKLIEVMVEIVEVRDLPAEHNGGLSVILSKKQPDLYFNGRRMSILSKAGKKDVAVFRCEPTGELIFKLVSYPSSVS
HIARPEKILGTALISLHDLMKTGSPLSIEKWFELVPNSGIVGSKPVNLWIALSFTPPVQAPSLLHMVQTRPSTTSCFFPLSGSFQQDETWTCVVDEGGNR
IINLQMRYSKKAEAKDKKEVIGMTSSGERLVLAEFAGTGWSLMNSSWWLQPHQIITDASRIFELTGSHKVIVFPGRKLEYEIKCEKHKSEQNFMTAVKFS
AEYPHGKAVALFDLKSASLKVNEEWLGFPGILLAFLLSDTPRNESNGQFNTDGESAKEMDTDSKQYANTSSKEDKTTNQIQDIEDTAKATTQEPYKSGDE
CDCGVVAQVEVMGGKGTGVVKNVTGEENHSNGSKAIINSGTYCSNLLGLVGSDSASHLILEDEAKSAHCGGCGSCHGGCGGCGSQTASSIFQGDAANSPH
CGGCGSCHGGCGGCGSCHGSSCGQDQQ

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT2G22660 Protein of unknown function (d... Potri.002G108900
[exp]
0 1
Potri.010G226200
[exp]
6.32 0.8061
AT1G75800 Pathogenesis-related thaumatin... Potri.001G221700
[exp]
21.84 0.8063
AT1G66920 Protein kinase superfamily pro... Potri.017G035500
[exp]
26.15 0.7809
AT1G75800 Pathogenesis-related thaumatin... Potri.001G222100
[exp]
36.05 0.7969
AT2G29090 CYP707A2 "cytochrome P450, family 707, ... Potri.009G033900
[exp]
36.37 0.7777
AT1G69040 ACR4 ACT domain repeat 4 (.1.2) Potri.012G083000
[exp]
44.35 0.7798
AT1G75800 Pathogenesis-related thaumatin... Potri.001G221500
[exp]
48.08 0.7794
AT1G75800 Pathogenesis-related thaumatin... Potri.001G284305
[exp]
51.47 0.7752
AT5G24530 DMR6 DOWNY MILDEW RESISTANT 6, 2-ox... Potri.012G006300
[exp]
71.23 0.7365
AT2G34930 disease resistance family prot... Potri.010G107000
[exp]
108.88 0.7154

Potri.002G108900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.