Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24400 652 / 0 ATCIPK8, PKS11, CIPK8, SnRK3.13 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) AT5G35410 534 / 0 ATSOS2, CIPK24, SOS2, SnRK3.11 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) AT1G30270 472 / 2e-164 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT5G21326 450 / 2e-156 Ca2+regulated serine-threonine protein kinase family protein (.1) AT2G26980 447 / 2e-155 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G01140 444 / 3e-154 PKS6, CIPK9, SnRK3.12 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) AT5G45820 378 / 4e-128 PKS18, CIPK20, SnRK3.6 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1) AT3G17510 358 / 3e-120 CIPK1, SnRK3.16 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2) AT4G30960 355 / 2e-119 CIPK6, SIP3, SnRK3.14, ATCIPK6 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1) AT5G58380 351 / 5e-117 PKS2, CIPK10, SnRK3.8, SIP1 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G130500 [exp] 561 / 0 AT5G35410 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.006G068400 [exp] 548 / 0 AT5G35410 686 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Potri.001G222600 [exp] 476 / 2e-166 AT2G26980 752 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.009G021000 [exp] 470 / 2e-164 AT2G26980 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Potri.006G062800 [exp] 469 / 1e-163 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 469 / 3e-163 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 466 / 1e-162 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.014G104200 [exp] 461 / 6e-161 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.010G002500 [exp] 382 / 9e-130 AT3G17510 631 / 0.0 SNF1-RELATED PROTEIN KINASE 3.16, CBL-interacting protein kinase 1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032822 [exp] 658 / 0 AT4G24400 738 / 0.0 SNF1-RELATED PROTEIN KINASE 3.13, PROTEIN KINASE 11, CBL-interacting protein kinase 8 (.1.2) Lus10019411 [exp] 563 / 0 AT5G35410 729 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10043264 [exp] 552 / 0 AT5G35410 630 / 0.0 SNF1-RELATED PROTEIN KINASE 3.11, CBL-INTERACTING PROTEIN KINASE 24, SALT OVERLY SENSITIVE 2, Protein kinase superfamily protein (.1) Lus10028115 [exp] 469 / 8e-164 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 468 / 4e-163 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10022590 [exp] 456 / 2e-159 AT2G26980 684 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10002692 [exp] 440 / 3e-152 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10030210 [exp] 439 / 7e-152 AT1G01140 709 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Lus10021488 [exp] 409 / 2e-141 AT2G26980 591 / 0.0 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) Lus10007283 [exp] 366 / 4e-123 AT5G45820 578 / 0.0 SNF1-RELATED PROTEIN KINASE 3.6, PROTEIN KINASE 18, CBL-interacting protein kinase 20 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0573 [poplar] [flax] KA1-like PF03822 [poplar] [flax] NAF NAF domain CL0016 [poplar] [flax] PKinase PF14531 [poplar] [flax] Kinase-like Kinase-like
Representative CDS sequence Show only first row Show all	>Potri.002G109000.4 pacid=42780000 polypeptide=Potri.002G109000.4.p locus=Potri.002G109000 ID=Potri.002G109000.4.v4.1 annot-version=v4.1 ATGCTTGGATTTTGTTGTCTTCCATATTATGATGTTTTGAATATTGGTAGCTTTCTTTTGGCTAAAATTCATCATATCTTGTATTCCTATAATTTAAAAC ACTTTAGGTTGTTACACAACCGCTTCTATCTTCCTCACAATATCTTTCTTTTTTTCCCGCAGATAAAACGGGAGATATCTATAATGAAGCTTGTTCGACA TCCTTATGTCGTGCGCCTGCATGAGGTTTTAGCAAGCCGAACAAAGATTTATATAATATTGGAATTCATTACAGGTGGTGAATTGTTTGATAAAATTGTG CATCATGGACGACTTAGTGAGGCTGAAGCTAGGAGATACTTTCAACAGCTTATTGATGGTGTGGATTATTGCCACAGTAAGGGAGTCTACCACAGAGATT TAAAGCCTGAAAATCTTTTACTCGATTCACAAGGAAACTTGAAGATTTCTGATTTTGGTCTGAGTGCACTGCCTGAACAAGGAGCTAGCTTGTTGCGGAC AACATGTGGAACTCCTAACTATGTAGCACCAGAGGTACTCAGTCACAAGGGTTATGATGGTGCTATCGCAGATGTGTGGTCCTGTGGAGTCATCCTTTAT GTTCTGATGGCAGGATATCTTCCATTTGATGAGCTTGATCTCACCACATTATATAGCAAGATTGACAGAGCAGAATTTTCTTGCCCATCTTGGTTTCCAG TGGGAGCTAAATCTTTGATTCATAGAATTTTGGACCCGAAGCCTGAAACACGTATTACAGTTGAACAGATTAGGAATGACGAGTGGTTCAAGAAAGGTTA TGTTCCTATCAAACCTGTTGAGTATGAAGATGTGAACCTTGATGATGTAAATGCAGTTTTTGATGATCCCGAGGAGCAAAGGGCTGATGAACAACACGGG AATGAGGAGATGAGTCCCTTGATTCTTAATGCATTCGACTTAATAATTTTATCTCAAGGCTTGAATCTTGCAGCCCTATTTGACCGTGGGCAGGACTCTC TGAAGCATCAGACACGCTTTGTTTCAAAGAAGCCAGCAACTGTTGTATTATCAAGCATGGAAGTTGTTGCACAATCAATGGGTTTTAAGACTCATATTCG CAATTTTAAGATGAGAGTGGAAGGTCTTTCAGCTGATAAGGCTGGTCATTTCTCAGTTATTCTGGAAGTATTTGAAATCGCTCCAACATTTTTAATGGTA GATATCCAGAGAGCTGCTGGAGATGCCGCTGAATACCTCAAGTTCTACAAGAATTTCTGCAGCAATCTTGAGGATATCATCTGGAAACCATCCACCGAGT CGAGCAAATCTAGAATGACCAAGTCAAAGAGCAAAAGGCGCTGA
AA sequence Show only first row Show all	>Potri.002G109000.4 pacid=42780000 polypeptide=Potri.002G109000.4.p locus=Potri.002G109000 ID=Potri.002G109000.4.v4.1 annot-version=v4.1 MLGFCCLPYYDVLNIGSFLLAKIHHILYSYNLKHFRLLHNRFYLPHNIFLFFPQIKREISIMKLVRHPYVVRLHEVLASRTKIYIILEFITGGELFDKIV HHGRLSEAEARRYFQQLIDGVDYCHSKGVYHRDLKPENLLLDSQGNLKISDFGLSALPEQGASLLRTTCGTPNYVAPEVLSHKGYDGAIADVWSCGVILY VLMAGYLPFDELDLTTLYSKIDRAEFSCPSWFPVGAKSLIHRILDPKPETRITVEQIRNDEWFKKGYVPIKPVEYEDVNLDDVNAVFDDPEEQRADEQHG NEEMSPLILNAFDLIILSQGLNLAALFDRGQDSLKHQTRFVSKKPATVVLSSMEVVAQSMGFKTHIRNFKMRVEGLSADKAGHFSVILEVFEIAPTFLMV DIQRAAGDAAEYLKFYKNFCSNLEDIIWKPSTESSKSRMTKSKSKRR

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24400		ATCIPK8, PKS11,...	SNF1-RELATED PROTEIN KINASE 3....		Potri.002G109000 [exp]	0	1
AT1G13130			Cellulase (glycosyl hydrolase ...		Potri.008G183400 [exp]	4.00	0.8216
AT1G34260		FAB1D	FORMS APLOID AND BINUCLEATE CE...		Potri.013G116400 [exp]	4.89	0.7700
AT4G30900			DNAse I-like superfamily prote...		Potri.018G106700 [exp]	5.47	0.7768
AT5G53140			Protein phosphatase 2C family ...		Potri.015G019200 [exp]	5.74	0.6967
AT1G35710			Protein kinase family protein ...		Potri.019G129100 [exp]	9.27	0.7912
AT1G67360			Rubber elongation factor prote...		Potri.003G173100 [exp]	14.00	0.7429
AT1G61660	bHLH	bHLH112	basic helix-loop-helix (bHLH) ...		Potri.004G029100 [exp]	15.00	0.7849
AT5G58350		ZIK2, WNK4	with no lysine (K) kinase 4 (....		Potri.019G128600 [exp]	15.29	0.7586
AT4G27290			S-locus lectin protein kinase ...		Potri.010G025500 [exp]	16.30	0.7603
AT5G35180			Protein of unknown function (D...		Potri.018G113100 [exp]	18.97	0.6818

Compare expression of checked genes

Potri.002G109000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.