Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	OPT2.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09930 1114 / 0 ATOPT2 oligopeptide transporter 2 (.1) AT5G64410 1068 / 0 ATOPT4 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) AT4G10770 854 / 0 ATOPT7 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) AT5G53520 848 / 0 ATOPT8 oligopeptide transporter 8 (.1) AT4G27730 840 / 0 ATOPT6 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) AT4G16370 816 / 0 ATOPT3 oligopeptide transporter (.1) AT5G53510 803 / 0 ATOPT9 oligopeptide transporter 9 (.1) AT4G26590 797 / 0 ATOPT5 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) AT5G55930 791 / 0 ATOPT1 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 1, oligopeptide transporter 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G079500 [exp] 1083 / 0 AT5G64410 1214 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.005G150400 [exp] 1032 / 0 AT5G64410 1106 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 4, oligopeptide transporter 4 (.1) Potri.003G145500 [exp] 886 / 0 AT4G10770 1197 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.007G056900 [exp] 848 / 0 AT4G10770 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Potri.012G019700 [exp] 826 / 0 AT4G27730 1055 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Potri.016G006500 [exp] 826 / 0 AT4G16370 1305 / 0.0 oligopeptide transporter (.1) Potri.006G006000 [exp] 819 / 0 AT4G16370 1284 / 0.0 oligopeptide transporter (.1) Potri.016G004800 [exp] 814 / 0 AT4G26590 988 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Potri.012G019500 [exp] 800 / 0 AT4G27730 1092 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041897 [exp] 836 / 0 AT4G10770 1097 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10006581 [exp] 831 / 0 AT4G10770 1260 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 7, oligopeptide transporter 7 (.1) Lus10022372 [exp] 828 / 0 AT4G27730 1094 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 6, oligopeptide transporter 1 (.1) Lus10039075 [exp] 813 / 0 AT4G16370 1304 / 0.0 oligopeptide transporter (.1) Lus10038784 [exp] 809 / 0 AT4G16370 1302 / 0.0 oligopeptide transporter (.1) Lus10022543 [exp] 799 / 0 AT4G26590 1084 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022541 [exp] 781 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10042147 [exp] 764 / 0 AT4G26590 1039 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10031978 [exp] 761 / 0 AT4G26590 1066 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1) Lus10022544 [exp] 758 / 0 AT4G26590 1079 / 0.0 ARABIDOPSIS THALIANA OLIGOPEPTIDE TRANSPORTER 5, oligopeptide transporter 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03169 [poplar] [flax] OPT OPT oligopeptide transporter protein
Representative CDS sequence Show only first row Show all	>Potri.002G109300.1 pacid=42780145 polypeptide=Potri.002G109300.1.p locus=Potri.002G109300 ID=Potri.002G109300.1.v4.1 annot-version=v4.1 ATGCATAGCACGCCAATTCTGTTGGAAACAGAACCTGACGTGCCAAAACAAACTCCCCCCTTCCCTGGATCCGCTCCAGATAGAAAACTACCTCTCCCTC TCACTCTCGGATACCTTCGCCTACCAATGGGTTCTCTTGAAATAGAAGGAAAACCCCAAAACCCGAACATGAACGAAAATATTGAAGAAGACGACGGCGT GTCTCCCATTGAGGAGGTCCGTCTAACTGTTCCAACACGCGACGATCATACCCTTCCAGTATGGACCTTTCGGATGTGGTTCCTTGGAATAGCCTCATGC ATTATTCTATCTTTTCTGAACACTTTCTTTTCCTACCGGACCGAACCTCTCACAATATCTATGATATCGGTACAGGTTGTGACTCTCCCTATTGGTCGCT TCATGGCCAAAACCTTGCCTACTGCCAAGTTCAGGGTTCCTGGATTTGGTGGTCGCGAGTTTTCCCTTAATCCTGGGCCTTTTAATGTTAAAGAGCATGT GCTCATTTCCATTTTTGCTAATGTGGGGAGCTCAACTGCCTATGCCGTTGGTATTATCGATATAATTATGGCTTTCTATAAAAGGAAGATATCGTTTTTG GCTAGTTGGATTCTTGTTTTAACTACTCAGATGCTGGGGTATGGATGGGCTGGGATCATGAGGAAGTATGTAGTGGATCCAGCAGAGATGTGGTGGCCGC TTAGTCTTATGCAAGTTTCTCTCTTCAGGGCTCTGCATGAGAAAGATAACAGCCGCATGTCACGAGGGAAATTCTTCTTGATCGCTCTAATCTGTAGCTT CTCATGGTATGTGTTTCCTGGATACCTTTTCCCGGCTATTGGAACCATTTCGTGGGTGTGCTGGGCATTCCCTAAGTCAGTGACAGCCCAGCAGCTTGGC TCAGGAATGAGAGGACTTGGTATTGGAGCTTTCGGGCTTGACTGGTCTGTCATAGCCTCGTTCATTGGCAGCCCACTTATCACCCCGTTCTTTGCCGCTG TCAATGTCCTTGTGGGATATGCTGCATTTATGTACGTAATATTGCCAATAGCATACTGGCGTTTTAATCTCTACAATGCGAAGACGTTTCCAATTTTCTC CTCACATTTATTTGACACTAAAGGACACGTGTATAACGTATCTGCCATAGTTGACAACAACTTTGAGCTAGATGTGGCCGCATTTCAGAGGCAAGGAAAC ATAAATTTGAGTGTGTTCTTTTCGCTGACGTATGGGATTGGTTTTGCTGCCATTATGTCCACCCTCACGCATGTGCTCGTGTTTAATGGAAAGGAAATAT GGCAACAGTTTCGAGCTTCATACAAGGGAAAGATGGATGTTCACACAAGATTAATGAAGAGGTATGAGGACATTCCTGGCTGGTGGTTCCACCTGACGCT AGTGCTGTCTTTTTTACTTTCTCTCGTACTGTGCATTGTAATGAAAGACCAAGTCCAAATGCCGTGGTGGGCGCTCATCTTTGCGTCAGGCCTTGCTTTG ATTTTTACGCTTCCAGTTAGTGTCATAACTGCCACAACAAATCAGACACCAGGGTTAAACATCATCACAGAGTACATTATGGGTCTAATTTACCCTGGTA GACCAATAGCCAACGTCTGCTTCAAAACCTATGGGTATATAAGCATGACTCAAGCTGTTTCCTTTCTCAGCGATTTCAAGCTAGGTCACTACATGAAGAT TCCACCAAGATCTATGTTTGTAGTGCAGTGCATAGGTACTCTAATAAATGGAACACTGAACACTGCAGTGGCATGGTGGCTGCTGACTGGCATTGAGAAC ATATGCCAGGACGAGCTACTCCCTCCAAACAGTCCATGGACATGTCCTGGCGATCGAGTTTTCTATGATGCATCTGTCATTTGGGGTTTGATTGGACCTG CTCGAATCTTTGGTCGACTTGGAAACTACACAGCACTAAATTGGTTCTTCCTTGGAGGAGTGCTAGGACCTGTTCTCGTATGGGGGCTACACAGACTTTT CCCCAAGCAGAAATGGATTAAATTAATTAATCTTCCTGTACTTTTGGGATCAACAGCTGCAATGCCACCAGCTACAACAGTAAACTTCAATTGCTGGATT GTGGTTGCAATAACTTTCAACTACTTCATCTTTAAGTTCCACAAGGTTTGGTGGCAGAGGTACAACTATGTTCTTTCTGCTGCCTTGGATGCTGGTTTGG CTTTCATGGGAGTTCTTTTGTACTTCAGTCTGACAATGAAGGAGATCAGCCTAAACTGGTGGGGTGCTGCTGGCGAGCACTGTCCCCTTGCTACCTGCCC AACTGCCAAAGGTGTTATTGTTGATGGGTGTCCTGTTTATTAG
AA sequence Show only first row Show all	>Potri.002G109300.1 pacid=42780145 polypeptide=Potri.002G109300.1.p locus=Potri.002G109300 ID=Potri.002G109300.1.v4.1 annot-version=v4.1 MHSTPILLETEPDVPKQTPPFPGSAPDRKLPLPLTLGYLRLPMGSLEIEGKPQNPNMNENIEEDDGVSPIEEVRLTVPTRDDHTLPVWTFRMWFLGIASC IILSFLNTFFSYRTEPLTISMISVQVVTLPIGRFMAKTLPTAKFRVPGFGGREFSLNPGPFNVKEHVLISIFANVGSSTAYAVGIIDIIMAFYKRKISFL ASWILVLTTQMLGYGWAGIMRKYVVDPAEMWWPLSLMQVSLFRALHEKDNSRMSRGKFFLIALICSFSWYVFPGYLFPAIGTISWVCWAFPKSVTAQQLG SGMRGLGIGAFGLDWSVIASFIGSPLITPFFAAVNVLVGYAAFMYVILPIAYWRFNLYNAKTFPIFSSHLFDTKGHVYNVSAIVDNNFELDVAAFQRQGN INLSVFFSLTYGIGFAAIMSTLTHVLVFNGKEIWQQFRASYKGKMDVHTRLMKRYEDIPGWWFHLTLVLSFLLSLVLCIVMKDQVQMPWWALIFASGLAL IFTLPVSVITATTNQTPGLNIITEYIMGLIYPGRPIANVCFKTYGYISMTQAVSFLSDFKLGHYMKIPPRSMFVVQCIGTLINGTLNTAVAWWLLTGIEN ICQDELLPPNSPWTCPGDRVFYDASVIWGLIGPARIFGRLGNYTALNWFFLGGVLGPVLVWGLHRLFPKQKWIKLINLPVLLGSTAAMPPATTVNFNCWI VVAITFNYFIFKFHKVWWQRYNYVLSAALDAGLAFMGVLLYFSLTMKEISLNWWGAAGEHCPLATCPTAKGVIVDGCPVY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09930		ATOPT2	oligopeptide transporter 2 (.1...		Potri.002G109300 [exp]	0	1	OPT2.1
AT3G51000			alpha/beta-Hydrolases superfam...		Potri.004G039700 [exp]	1.00	0.9043
AT1G32100		ATPRR1	pinoresinol reductase 1 (.1)		Potri.003G100200 [exp]	2.44	0.8625	PCBERp8
AT4G22680	MYB	ATMYB85	myb domain protein 85 (.1)		Potri.015G129100 [exp]	5.00	0.8420
AT5G57200			ENTH/ANTH/VHS superfamily prot...		Potri.018G142800 [exp]	6.48	0.8303
AT4G27060		CN, SPR2, TOR1	TORTIFOLIA 1, SPIRAL 2, CONVOL...		Potri.011G136700 [exp]	9.16	0.8600
AT1G13635			DNA glycosylase superfamily pr...		Potri.010G137300 [exp]	12.96	0.8459
AT1G04650			unknown protein		Potri.001G053000 [exp]	13.41	0.8157
AT2G47360			unknown protein		Potri.002G195400 [exp]	13.85	0.8182
AT4G33450	MYB	ATMYB69	myb domain protein 69 (.1)		Potri.007G106100 [exp]	17.49	0.8406
AT4G24015			RING/U-box superfamily protein...		Potri.003G142600 [exp]	19.39	0.7715

Compare expression of checked genes

Potri.002G109300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.