Plant FIBer expression Database

Potri.002G109400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues

No hit found
PFAM info
Representative CDS sequence
>Potri.002G109400.1 pacid=42776984 polypeptide=Potri.002G109400.1.p locus=Potri.002G109400 ID=Potri.002G109400.1.v4.1 annot-version=v4.1
ATGGAGAGAACTTTGTCTCCTAGAAATATAGAAGAAGAAGGGCCGCTGTCATGTTGGGGTCGTCTCAAGTACCTGAAGTTTCCATGGACTAAAAGAAGAA
TAACCAGCAACACCACAACGTCTCCAGGACAGAAGAGAAGTGCTATAGGTTGCAATTTAACAGCAACTCTCACGAGAAACAATAGAAAACCAAAAGTCCC
AGCTGGAGGGCGTTTTAGGTACTCCCCCTTAAGCTATGCTCAAAATTTTGACGATGGTAGCTGGGACAATGATGATATCGAGGATGGTGAATATCTCGGG
TTCTCTTCAAGGTTTGCTCCACCTCCATCAAGATCACTTGAAGAAGATAAAAGACAGAGCGCTGGTTGA
AA sequence
>Potri.002G109400.1 pacid=42776984 polypeptide=Potri.002G109400.1.p locus=Potri.002G109400 ID=Potri.002G109400.1.v4.1 annot-version=v4.1
MERTLSPRNIEEEGPLSCWGRLKYLKFPWTKRRITSNTTTSPGQKRSAIGCNLTATLTRNNRKPKVPAGGRFRYSPLSYAQNFDDGSWDNDDIEDGEYLG
FSSRFAPPPSRSLEEDKRQSAG

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.002G109400
[exp]
0 1
AT1G66670 NCLPP3, NCLPP4,... CLP protease proteolytic subun... Potri.004G092100
[exp]
2.44 0.9520
ATCG00220 ATCG00220.1, PS... photosystem II reaction center... Potri.013G142100
[exp]
3.00 0.9375
AT4G28290 unknown protein Potri.019G100601
[exp]
4.89 0.9423
AT3G47650 DnaJ/Hsp40 cysteine-rich domai... Potri.018G028500
[exp]
5.29 0.9475
AT3G18830 ATPMT5, AtPLT5 ARABIDOPSIS THALIANA POLYOL/MO... Potri.004G151725
[exp]
9.38 0.9334
AT4G12300 CYP706A4 "cytochrome P450, family 706, ... Potri.001G118400
[exp]
11.31 0.9095
AT4G24700 unknown protein Potri.012G086300
[exp]
13.63 0.9200
AT2G32480 ARASP ARABIDOPSIS SERIN PROTEASE (.1... Potri.002G228600
[exp]
14.49 0.9404
AT1G03430 AHP5 histidine-containing phosphotr... Potri.004G185900
[exp]
18.43 0.9083
AT5G57170 Tautomerase/MIF superfamily pr... Potri.006G075100
[exp]
18.57 0.9464

Potri.002G109400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.