Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09900 855 / 0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G04760 445 / 4e-150 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT1G79080 317 / 1e-100 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12300 310 / 2e-97 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G53700 308 / 2e-95 MEE40 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G12775 302 / 4e-94 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62670 301 / 4e-94 RPF2 rna processing factor 2 (.1) AT1G62930 298 / 5e-93 RPF3 RNA processing factor 3, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G22470 297 / 1e-92 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G62590 297 / 2e-92 pentatricopeptide (PPR) repeat-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G047000 [exp] 429 / 7e-144 AT3G04760 781 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.019G019300 [exp] 425 / 2e-142 AT3G04760 776 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.011G144300 [exp] 377 / 4e-124 AT1G79080 742 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G457300 [exp] 360 / 3e-117 AT1G79080 712 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G019200 [exp] 323 / 7e-103 AT1G08610 578 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.016G025600 [exp] 312 / 9e-98 AT3G22470 426 / 3e-141 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G046000 [exp] 303 / 5e-94 AT1G63130 405 / 9e-133 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G015900 [exp] 302 / 2e-93 AT5G64320 878 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G271400 [exp] 294 / 1e-91 AT1G12700 486 / 3e-164 RNA processing factor 1, ATP binding;nucleic acid binding;helicases (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031565 [exp] 373 / 8e-121 AT1G09900 335 / 4e-106 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015110 [exp] 356 / 4e-116 AT1G09900 347 / 1e-112 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031566 [exp] 351 / 5e-114 AT1G09900 349 / 3e-113 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015113 [exp] 342 / 2e-110 AT1G09900 364 / 5e-119 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015112 [exp] 341 / 2e-110 AT1G09900 327 / 6e-105 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10031564 [exp] 340 / 8e-110 AT1G09900 358 / 6e-117 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10037012 [exp] 338 / 6e-109 AT1G09900 353 / 5e-115 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10014660 [exp] 331 / 7e-106 AT3G04760 522 / 3e-180 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10000554 [exp] 328 / 4e-105 AT3G04760 535 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10015108 [exp] 324 / 3e-103 AT1G09900 345 / 2e-111 Pentatricopeptide repeat (PPR-like) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF12854 [poplar] [flax] PPR_1 PPR repeat CL0020 [poplar] [flax] TPR PF13041 [poplar] [flax] PPR_2 PPR repeat family
Representative CDS sequence Show only first row Show all	>Potri.002G109500.5 pacid=42778421 polypeptide=Potri.002G109500.5.p locus=Potri.002G109500 ID=Potri.002G109500.5.v4.1 annot-version=v4.1 ATGGATTTGATAGTACCTACAAGTCATACCCATGAAGGGCTTCGCTCATTTCAGTACTTCAATAGATACACCACTAGAAGAAGTAGCTTTGCTGGAGCTA GAATTAGGGGTAATGATGGTTCAAGCAGGAAAGTCCATGTGGGGTTTAGAAAGTTAAGGAAGAGTAGGGTTTTTGCCGTTTCGGGAGTCGAAACTTTTCG TTCCAATGGTAAATTGCAAAATCTCGACAAGCCTCTAAACGGGCATATGGGAAATGGACATGTTTCTTCGAGTTCTATTGAGGAATTTGAGAGCAATAAT CATCTTCGTAAATTGGTCAGAAATGGGGAATTAGAAGAGGGTTTTAGGTTTCTTGAAAACATGGTCTATCGTGGGGAGATTCCGGATATAATTGCTTCCA CGAGCCTAATTCGAGGATTTTGTAAGATTGGAAAGACTAGGAAGGCGACTCGGATCATGGAGATAATAGAGGATTCTGGAGCGGTTCCAGATGTTATAAC TTATAATGTATTGATTAGTGGGTATTGCAAGGCGGGAGAGATTGATAATGCTTTAAGGGTTTTGGACCGGATGAGTGTTGCCCCAGATGTTGTTACATAT AATACGATCTTGCGTACCTTGTGTGATAGTGGGAAGTTGAAGCAAGCAATGGAAGTTCTTGATCGACAGCTGGAAAAGGAGTGTTATCCAGATGTGATTA CATACACTATACTGATTGAGGCGACTTGTGCAGAAAGTGGGGTTGGACAGGCCATGAAGCTCTTAGATGAGATGGGAAGCAGAGGATGCAAACCGGATGT GGTTACATATAATGTTCTTGTCAATGGGATGTGCAAGGAAGGGAGATTGGACGAAGCTATCAAGTTCTTAAACAGCATGCCATCATATGGATCCCAGCCT AATGTCATTACTCATAATATTATTTTGCGTAGCATGTGTAGCACAGGCAGGTGGATGGATGCAGAGAAACTACTGACTGAAATGGTTCGTAAGGGTTGTT CTCCAAGTGTTGTTACTTTCAATATCTTAATTAATTTCTTGTGCCGTAAGGGTTTACTAGGTCGAGCAATTGACATATTGGAGAAGATGCCAACGCATGG ATGCACTCCAAATTCCTTGAGCTACAATCCATTGCTCCATGGCTTTTGCAAAGAAAAGAAGATGGACAGGGCAATTCAGTATTTGGAGATAATGGTGTCT AGAGGCTGTTATCCTGATATTGTGACCTATAATACTATGCTCACAGCTTTATGTAAAGATGGGAAGGTTGATGCTGCAGTTGAGCTACTTAATCAGCTAA GTAGTAAAGGGTGCTCACCTGTTTTAATCACCTACAATACTGTGATTGATGGGCTCTCAAAGGTGGGGAAAACAGATCAAGCTGTAGAACTACTGCATGA GATGCGTGGAAAGGGTTTGAAGCCTGATGTCATCACCTATTCCTCACTTATTGCTGGGCTTAGTAGAGAAGGAAAGGTTGAAGAAGCAATCAAGTTTTTT CATGATGTGGAAGGATTTGGGGTCAAACCCAATGCTTTCACCTACAACTCTATCATGTTTGGACTTTGCAAGGCTCAACAGACTGATCGTGCAATTGACT TCCTGGCTTATATGATATCTAAGGGATGTAAACCCACTGAAGTTTCATACACCATTCTCATTGAAGGCATAGCTAATGAAGGTTTAGCTAAGGAGGCTTT GGAGTTGTTAAACGAGCTGTGCTCAAGAGGAGTTGTCAAGAAAAGCTCAGCAGAACAGGTGGTAGTCAGGCTGTAG
AA sequence Show only first row Show all	>Potri.002G109500.5 pacid=42778421 polypeptide=Potri.002G109500.5.p locus=Potri.002G109500 ID=Potri.002G109500.5.v4.1 annot-version=v4.1 MDLIVPTSHTHEGLRSFQYFNRYTTRRSSFAGARIRGNDGSSRKVHVGFRKLRKSRVFAVSGVETFRSNGKLQNLDKPLNGHMGNGHVSSSSIEEFESNN HLRKLVRNGELEEGFRFLENMVYRGEIPDIIASTSLIRGFCKIGKTRKATRIMEIIEDSGAVPDVITYNVLISGYCKAGEIDNALRVLDRMSVAPDVVTY NTILRTLCDSGKLKQAMEVLDRQLEKECYPDVITYTILIEATCAESGVGQAMKLLDEMGSRGCKPDVVTYNVLVNGMCKEGRLDEAIKFLNSMPSYGSQP NVITHNIILRSMCSTGRWMDAEKLLTEMVRKGCSPSVVTFNILINFLCRKGLLGRAIDILEKMPTHGCTPNSLSYNPLLHGFCKEKKMDRAIQYLEIMVS RGCYPDIVTYNTMLTALCKDGKVDAAVELLNQLSSKGCSPVLITYNTVIDGLSKVGKTDQAVELLHEMRGKGLKPDVITYSSLIAGLSREGKVEEAIKFF HDVEGFGVKPNAFTYNSIMFGLCKAQQTDRAIDFLAYMISKGCKPTEVSYTILIEGIANEGLAKEALELLNELCSRGVVKKSSAEQVVVRL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09900			Pentatricopeptide repeat (PPR-...		Potri.002G109500 [exp]	0	1
AT1G11430			plastid developmental protein ...		Potri.011G032900 [exp]	3.31	0.9805
AT3G58140			phenylalanyl-tRNA synthetase c...		Potri.013G105200 [exp]	4.47	0.9760
AT3G57430		OTP84	ORGANELLE TRANSCRIPT PROCESSIN...		Potri.001G075800 [exp]	4.89	0.9733
AT3G26900		ATSKL1	Arabidopsis thaliana shikimate...		Potri.017G062800 [exp]	5.65	0.9787	SK1
AT4G34730			ribosome-binding factor A fami...		Potri.004G164200 [exp]	6.24	0.9731
AT4G29060		EMB2726	embryo defective 2726, elongat...		Potri.018G083900 [exp]	8.36	0.9758
AT4G19100		PAM68	photosynthesis affected mutant...		Potri.001G132001 [exp]	8.66	0.9766
AT3G01660			S-adenosyl-L-methionine-depend...		Potri.001G340900 [exp]	9.00	0.9748
AT5G39210		CRR7	chlororespiratory reduction 7 ...		Potri.004G120300 [exp]	9.16	0.9753
AT5G53080			Tetratricopeptide repeat (TPR)...		Potri.015G010800 [exp]	9.48	0.9707

Compare expression of checked genes

Potri.002G109500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.