Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09920 274 / 1e-94 TRAF-type zinc finger-related (.1) AT4G15420 69 / 8e-14 Ubiquitin fusion degradation UFD1 family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G156300 [exp] 65 / 3e-12 AT4G15420 733 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10042917 [exp] 306 / 3e-107 AT1G09920 257 / 4e-88 TRAF-type zinc finger-related (.1) Lus10028213 [exp] 304 / 3e-106 AT1G09920 256 / 2e-87 TRAF-type zinc finger-related (.1) Lus10015140 [exp] 66 / 1e-12 AT4G15420 809 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1) Lus10031538 [exp] 66 / 2e-12 AT4G15420 708 / 0.0 Ubiquitin fusion degradation UFD1 family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G109800.3 pacid=42777906 polypeptide=Potri.002G109800.3.p locus=Potri.002G109800 ID=Potri.002G109800.3.v4.1 annot-version=v4.1 ATGGCAGTTGCATCTGAGGAATCAACTAGCATATGCAGTCACTGTGACAGAGCTATTCCTTCCTCAAACATTGATTTGCACTATGCACATTGTTTCCGAA ATCTCAAAAAATGTAAAATCTGTGGTGATATGGTCCCCAAGAAACATGCTGAGGAACATTTCTTGAACACTCATGCTCCGGTAGCCTGTTCACTCTGCAG TGAGACAATGGAACGTGAAATTCTAGCTGTCCATAAAGGTGAAAATTGTCCCCAAAGGATTGTCACATGTGAGTTCTGTGAGTTTCCATTGCCAGCAGTT GATCTAGCTGAGCATCAGGAGGTATGTGGGAATCGGACAGAACTCTGTCACATGTGTAATAAATACATTAGACTGCGAGAAAGATATAATCATGAGTCTA GATGCACTGGCTTACCAGATACTACTGTAGAGTCTTCCAGGGATGTGAGGGCTGCTGAAAGAAGACAGCCACAAGGTCCCCAGAGAAGGCAGCCACAGGA CTTTTCACGGAAACGACTTCTATTCACTATTGCTATAACTGGCATTGCTGTTCTGTTAGGATCATTTCTCTTCCAGAAGAAAACTGAGGATAGTCAAGTG CATTAG
AA sequence Show only first row Show all	>Potri.002G109800.3 pacid=42777906 polypeptide=Potri.002G109800.3.p locus=Potri.002G109800 ID=Potri.002G109800.3.v4.1 annot-version=v4.1 MAVASEESTSICSHCDRAIPSSNIDLHYAHCFRNLKKCKICGDMVPKKHAEEHFLNTHAPVACSLCSETMEREILAVHKGENCPQRIVTCEFCEFPLPAV DLAEHQEVCGNRTELCHMCNKYIRLRERYNHESRCTGLPDTTVESSRDVRAAERRQPQGPQRRQPQDFSRKRLLFTIAITGIAVLLGSFLFQKKTEDSQV H

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09920			TRAF-type zinc finger-related ...		Potri.002G109800 [exp]	0	1
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.003G045300 [exp]	1.73	0.7504
AT4G36800		RCE1	RUB1 conjugating enzyme 1 (.1....		Potri.005G126500 [exp]	4.24	0.7608
AT4G22310			Uncharacterised protein family...		Potri.011G023100 [exp]	4.47	0.7976
AT5G27720		LSM4, EMB1644	SM-like protein 4, embryo defe...		Potri.002G205700 [exp]	12.96	0.7195	Pt-GRP2.1
AT1G80500			SNARE-like superfamily protein...		Potri.003G183400 [exp]	18.65	0.7292
AT4G27040		VPS22	EAP30/Vps36 family protein (.1...		Potri.001G424600 [exp]	19.49	0.6690
AT1G04290			Thioesterase superfamily prote...		Potri.004G134066 [exp]	22.36	0.7233
AT3G10915			Reticulon family protein (.1.2...		Potri.019G057400 [exp]	23.36	0.7028
AT1G73030		CHMP1A, VPS46.2	CHARGED MULTIVESICULAR BODY PR...		Potri.001G194400 [exp]	25.03	0.7089
AT4G26060			Ribosomal protein L18ae family...		Potri.006G146300 [exp]	28.39	0.6800

Compare expression of checked genes

Potri.002G109800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.