Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09890 967 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09910 922 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G24430 876 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G09880 822 / 0 Rhamnogalacturonate lyase family protein (.1) AT2G22620 752 / 0 Rhamnogalacturonate lyase family protein (.1.2) AT4G38030 721 / 0 Rhamnogalacturonate lyase family protein (.1) AT4G37950 712 / 0 Rhamnogalacturonate lyase family protein (.1) AT1G65210 229 / 8e-71 Galactose-binding protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G151500 [exp] 1024 / 0 AT1G09910 979 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110200 [exp] 980 / 0 AT1G09890 892 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110300 [exp] 979 / 0 AT4G24430 929 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.002G110100 [exp] 864 / 0 AT1G09890 810 / 0.0 Rhamnogalacturonate lyase family protein (.1) Potri.006G218500 [exp] 812 / 0 AT2G22620 842 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.014G004500 [exp] 798 / 0 AT2G22620 807 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Potri.011G006200 [exp] 678 / 0 AT1G09910 663 / 0.0 Rhamnogalacturonate lyase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028212 [exp] 1040 / 0 AT1G09890 981 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10000684 [exp] 841 / 0 AT1G09910 842 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10030233 [exp] 785 / 0 AT4G24430 776 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10005979 [exp] 740 / 0 AT1G09880 767 / 0.0 Rhamnogalacturonate lyase family protein (.1) Lus10004281 [exp] 728 / 0 AT2G22620 818 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10039627 [exp] 715 / 0 AT2G22620 785 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10019231 [exp] 712 / 0 AT2G22620 800 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10012720 [exp] 663 / 0 AT2G22620 706 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10029552 [exp] 654 / 0 AT2G22620 740 / 0.0 Rhamnogalacturonate lyase family protein (.1.2) Lus10005978 [exp] 631 / 0 AT4G24430 630 / 0.0 Rhamnogalacturonate lyase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0103 [poplar] [flax] Gal_mutarotase PF06045 [poplar] [flax] Rhamnogal_lyase Rhamnogalacturonate lyase family CL0202 [poplar] [flax] GBD PF14683 [poplar] [flax] CBM-like Polysaccharide lyase family 4, domain III CL0287 [poplar] [flax] Transthyretin PF14686 [poplar] [flax] fn3_3 Polysaccharide lyase family 4, domain II
Representative CDS sequence Show only first row Show all	>Potri.002G110000.1 pacid=42778805 polypeptide=Potri.002G110000.1.p locus=Potri.002G110000 ID=Potri.002G110000.1.v4.1 annot-version=v4.1 ATGCCGCATTTAGGGGTGCAACTCCTTGTTCAAGATCGTCATGTGGTGATGGATAATGGCATACTGCAAGTCACTTTGTCAAACCCAGATGGAATTGTCA CTGGTATACGATATAGTGGCATCGACAATTTACTTGAAGTTCAAAATGATGAATCTAATAGAGGGTACTGGGACCTCGTATGGAATACAGCAGGAACTAC AGGAATTTTCGATGTGATTAAAGGAAGAAGTTTTAAGGTTATTGTAGAAACCGAAGAACAAGTGGAGGTCTCATTCACAAGAACATGGGATTCCTCACAG GAGGGCAAACTCGTTCCCCTGAACATAGATAAAAGGTTTGTAATGCTTCGTGGTTCCTCAGGATTCTACTCTTACGCCATCTATGAGCACTTGAAAGAAT GGCCTGGTTTTAACCTTGGCGAAACTAGGATTGCGTTCAAGCTCAGAAAAGACAAGTTTCACTACATGATCGCGGCAGACAATAGACAAAGATACATGCC ATTACCTGATGACAGATTGCCACCAAGAGGCCAACCCTTGGCCTATCCTGAGGCAGTTCAGCTTGTCAATCCTGTCGAGCCAGACTTCAAAGGAGAGGTG GATGATAAGTACCAATACTCAATTGAAAATAAAGACAACAAGGTACACGGGTGGATATGTATGGACCCCGCAGTAGGGTTCTGGCAAATTACACCAAGCG ATGAGTTTCGATCTGGTGGACCAGTTAAACAGAACTTAACCTCTCATGTTGGACCAACCACCCTTGTGATGTTTCTCAGTGCTCATTATTCGGGAGAAGA TTTGGTGCCGAAAATTGGAGCTGGTGAGGCATGGAAGAAAGTTTTTGGACCCGTGTTTATGTATTTTAATTCTGTGATGGATGGAGATGACCCTCTTTCG CTTTGGGAGGACGCTAAATTGCAGATGTTGATTGAAGTCCAAAGCTGGCCTTATGGATTTCCAGCTTCGGAGGATTACCAAAAATCGGATCAACGGGGGA ATGTTAGTGGCAGACTATTAGTGCGAGACAGGTTTGTAAGCGATGATTATACACCAGCAAATGGAGCTTATGTTGGACTAGCACTACCAGGAGATGTCGG ATCGTGGCAAAGAGAATGCAAGGATTACCAATTCTGGAATAGAGCAGATGAGGGCGGCTATTTTTCCATCAATAATGTACGCACTGGTGACTATAACCTT TACGCATGGGTTCCTGGCGTTATTGGCGATTATCGATACGATGTTTCCATTACTATTACATCAGGTTGTGACATTGAGATGGGTGATCTCGTGTACGAGC CTCCAAGAGATGGGCCAACATTGTGGGAAATAGGCATCCCTGATCGTTCGGCAGAGGAGTTTTATGTTCCTGATCCTAATCCTAAGTACATCAATAAACT CTATGTTAATCATCCTGACAGGTTTAGGCAGTACGGACTGTGGGAAAGATATGCCGAATTATATCCTGATGGAGACCTGGTGTACACCGTTGGAGTTAGT GATTACAGAAAAGATTGGTTCTATGCTCAGGTTACCAGGAAGAAGGATGATAACACATACCAGAGAGCCACATGGCAAATCAAGTTTAATCTTGACAAAG TGGATCATAATGGCATCTATAAACTACGTGTAGCACTTGCATCGGCTACTGTTTCTGAATTGCAGGTTCGAATAAACGATCCAAAGGCCAAACCCTTATT TTCGAGCGGATTGATAGGGAAGGATAACTCAATTGCAAGACATGGAATTCATGGACTCTATTGGCTGTATGGTATAGATGTACCTGGTGCTCGACTTGTT GAAGGTGATAATGCTGTGTTTTTGACACAGCCAAGAAGCATTAGCCCTTTCCAGGGGATTATGTATGATTACATTCGTCTGGAAGGCCCTTCTTCTTCTA GTTCCAACTCACCTGAGACATCATTTTAG
AA sequence Show only first row Show all	>Potri.002G110000.1 pacid=42778805 polypeptide=Potri.002G110000.1.p locus=Potri.002G110000 ID=Potri.002G110000.1.v4.1 annot-version=v4.1 MPHLGVQLLVQDRHVVMDNGILQVTLSNPDGIVTGIRYSGIDNLLEVQNDESNRGYWDLVWNTAGTTGIFDVIKGRSFKVIVETEEQVEVSFTRTWDSSQ EGKLVPLNIDKRFVMLRGSSGFYSYAIYEHLKEWPGFNLGETRIAFKLRKDKFHYMIAADNRQRYMPLPDDRLPPRGQPLAYPEAVQLVNPVEPDFKGEV DDKYQYSIENKDNKVHGWICMDPAVGFWQITPSDEFRSGGPVKQNLTSHVGPTTLVMFLSAHYSGEDLVPKIGAGEAWKKVFGPVFMYFNSVMDGDDPLS LWEDAKLQMLIEVQSWPYGFPASEDYQKSDQRGNVSGRLLVRDRFVSDDYTPANGAYVGLALPGDVGSWQRECKDYQFWNRADEGGYFSINNVRTGDYNL YAWVPGVIGDYRYDVSITITSGCDIEMGDLVYEPPRDGPTLWEIGIPDRSAEEFYVPDPNPKYINKLYVNHPDRFRQYGLWERYAELYPDGDLVYTVGVS DYRKDWFYAQVTRKKDDNTYQRATWQIKFNLDKVDHNGIYKLRVALASATVSELQVRINDPKAKPLFSSGLIGKDNSIARHGIHGLYWLYGIDVPGARLV EGDNAVFLTQPRSISPFQGIMYDYIRLEGPSSSSSNSPETSF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09890			Rhamnogalacturonate lyase fami...		Potri.002G110000 [exp]	0	1
AT1G34575			FAD-binding Berberine family p...		Potri.011G158400 [exp]	2.23	0.8666
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.006G026500 [exp]	4.24	0.8322
AT4G35350		XCP1	xylem cysteine peptidase 1 (.1...		Potri.004G207600 [exp]	7.21	0.7798	Pt-XCP1.1
AT5G43080		CYCA3;1	Cyclin A3;1 (.1)		Potri.008G008476 [exp]	7.74	0.7954
AT1G23460			Pectin lyase-like superfamily ...		Potri.011G159801 [exp]	8.06	0.8275
AT5G04200		AtMCP2f, ATMC9	metacaspase 2f, metacaspase 9 ...		Potri.016G024500 [exp]	10.58	0.8102
AT5G50570	SBP	SPL13, SPL13A	SQUAMOSA PROMOTER-BINDING PROT...		Potri.012G100700 [exp]	12.24	0.7786
					Potri.005G150150 [exp]	14.28	0.8576
AT3G13050		AtNiaP	nicotinate transporter, Major ...		Potri.014G000800 [exp]	15.58	0.7796
AT3G07130		ATPAP15, PAP15	purple acid phosphatase 15 (.1...		Potri.017G055900 [exp]	18.57	0.7338

Compare expression of checked genes

Potri.002G110000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.