Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G55860 1124 / 0 UPL1 ubiquitin-protein ligase 1 (.1.2) AT1G70320 1119 / 0 UPL2 ubiquitin-protein ligase 2 (.1) AT3G17205 243 / 6e-65 UPL6 ubiquitin protein ligase 6 (.1.2.3) AT3G53090 214 / 2e-55 UPL7 ubiquitin-protein ligase 7 (.1.2) AT4G12570 187 / 1e-47 UPL5 ubiquitin protein ligase 5 (.1) AT5G02880 159 / 3e-38 UPL4 ubiquitin-protein ligase 4 (.1) AT4G38600 114 / 2e-24 UPL3, KAK UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368600 [exp] 1152 / 0 AT1G55860 4297 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.011G094100 [exp] 1135 / 0 AT1G55860 4187 / 0.0 ubiquitin-protein ligase 1 (.1.2) Potri.010G150000 [exp] 242 / 1e-64 AT3G17205 1506 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.008G101300 [exp] 235 / 1e-62 AT3G17205 1432 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Potri.016G096500 [exp] 219 / 3e-57 AT3G53090 1447 / 0.0 ubiquitin-protein ligase 7 (.1.2) Potri.016G012900 [exp] 191 / 6e-49 AT4G12570 853 / 0.0 ubiquitin protein ligase 5 (.1) Potri.006G011701 [exp] 191 / 1e-48 AT4G12570 842 / 0.0 ubiquitin protein ligase 5 (.1) Potri.016G059800 [exp] 137 / 6e-32 AT4G12570 733 / 0.0 ubiquitin protein ligase 5 (.1) Potri.009G134300 [exp] 130 / 2e-29 AT4G38600 2234 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032830 [exp] 5204 / 0 AT1G55860 1189 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10002605 [exp] 2647 / 0 AT1G55860 1128 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10032589 [exp] 1140 / 0 AT1G55860 4402 / 0.0 ubiquitin-protein ligase 1 (.1.2) Lus10035589 [exp] 218 / 9e-57 AT3G53090 1385 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10010493 [exp] 197 / 8e-51 AT4G12570 830 / 0.0 ubiquitin protein ligase 5 (.1) Lus10017098 [exp] 177 / 3e-44 AT3G17205 1249 / 0.0 ubiquitin protein ligase 6 (.1.2.3) Lus10008636 [exp] 169 / 3e-41 AT3G53090 1270 / 0.0 ubiquitin-protein ligase 7 (.1.2) Lus10003792 [exp] 142 / 7e-36 AT4G12570 409 / 3e-136 ubiquitin protein ligase 5 (.1) Lus10019908 [exp] 140 / 2e-32 AT4G38600 1545 / 0.0 UBIQUITIN-PROTEIN LIGASE 3, KAKTUS, HEAT repeat ;HECT-domain (ubiquitin-transferase) (.1), HEAT repeat ;HECT-domain (ubiquitin-transferase) (.2) Lus10027324 [exp] 124 / 2e-29 AT4G12570 373 / 1e-121 ubiquitin protein ligase 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0214 [poplar] [flax] UBA PF00627 [poplar] [flax] UBA UBA/TS-N domain CL0552 [poplar] [flax] Hect PF00632 [poplar] [flax] HECT HECT-domain (ubiquitin-transferase) CL0552 [poplar] [flax] PF06012 [poplar] [flax] DUF908 Domain of Unknown Function (DUF908) CL0552 [poplar] [flax] PF06025 [poplar] [flax] DUF913 Domain of Unknown Function (DUF913) CL0552 [poplar] [flax] PF14377 [poplar] [flax] UBM Ubiquitin binding region
Representative CDS sequence Show only first row Show all	>Potri.002G110500.1 pacid=42778199 polypeptide=Potri.002G110500.1.p locus=Potri.002G110500 ID=Potri.002G110500.1.v4.1 annot-version=v4.1 ATGGCAACGATACGATCGAGTTTGCCATCGAGACTACGGCAGCTTTTGTCCGGTGATAGCATCATCGGTCCATCTATTAAATTAGACTCTGAAACTCCTC CTAAAATTAAAGCATTTGTTGACAAGGTGATCCAGAGTCCATTGCAAGATATAGCCATACCCCTTTCTGGCTTTCGGTGGGAGTACAGTAAGGGGAATTT TCATCATTGGAGGCCTCTGTTTCTGCATTTCGATACATACTTCAAGACATACTTGTCTAGTAGGAATGGCCTTTCATTATCAGATAATATTTCAGAAGAT GATAGTCCATTTCCAAAACATGCGGTTCTTCAAATTTTACGTGTGATGCAAATAATTTTAGAGAATTGCCATGACAAGAGTTCATTTGATGGCTTAGAGC ATTTCAAGCTCCTTTTAGCATCCACAGATCCAGAGGTTCTTATAGCTACATTGGAGACTCTTTCAGCACTTGTTAAAATCAATCCGTCTAAGCTGCATGG AAGTGGGAAGTTGATTGGATGTGGCTCAGTAAACAGCTATCTCCTGTCTCTAGCACAGGGTTGGGGAAGTAAAGAGGAAGGCTTGGGCTTATATTCATGT GTTATGGCAAATGAAAGAACACAGGAAGAAGGGCTTTGTTTGTTCCCATCTGATGAAGAAAATGAACTGGACAAGTCTCAACACCGAATTGGCTCAACCC TTTATTTTGAATTGCATGGTCTGACTGCCCAAAATACTATGGAAAACAGTAGCAATACAACTTCTAGTTTGAGAGTTATACACACAGCAGACCTGCATTT ACAAAAAGAAGATGACCTACAGTTGATGAAACAGTACATTGAGCAGTATAATGTACCTCCTGACCTTCGATTCTCATTACTGACCAGAATCAGATATGCT CGGGCTTTTCGTTCTCCTAGAGTGTGCAGGCTGTACAGCAGGATCTGCCTCCTCGCATTCATTGTGCTTGTTCAGTCTGGTGATGCGAATGATGAACTGA CTTCCTTTTTTGCTAATGAACCTGAGTATACAAATGAGTTGATTAGGATTGTGCGATCAGAAGAAACTGTTCCTGGAACCATCAGAACTCTTGCAATGCT GGCCTTAGGTGCTCAGTTAGCTGCTTATACAGCATCACATGAGCGGGCACGGATTTTAAGTGGATCTAGCATCAGTTTTGCTGCAGGGAACCGCATGATT CTCCTGAATGTGCTTCAGAAAGCTGTTTTGTCGCTGAAGAACTCCAACGATCCATCCTCTCTTGCCTTTGTTGAAGCACTTCTTCAGTTCTATTTGCTCC ATATTGTGTCATCCTCAGCTTCAGGGAGCAATGTTAGGGGGTCTGGAATGGTTCCTACTTTTTTACCACTTTTGGAGGACTCAGATCCCAGTCATATGCA CCTTGTCTATTTGGCCGTGAAAGCCTTACAGAAGCTCATGGATTACAGCAGTTCAGCTGTGTCACTGCTTCGAGAATTGGGGGGAGTAGAACTTTTGGCA CAAAGGTTACAGATAGAAGTACATAGAATTATTGGCTTGGCCGGGGAAATTGATAATTCAGTGACCATTGGTGAATGTTCAAGATTCAGTGATGATCATA TCTACTCGCAGAAGAGGCTCATCAAGGTGCTTTTGAAGGCACTTGGGTCTGCCACATATGCACCTGCTGGCAATGCCAGATCCTTGAATTCCCATGATAG CTCCTTACCTTCTACTTTGTCACTGATATACAAGAATGCAGATAAATTTGGAGGTGACATTTATTACTCAGCTGTGACTGTTATGAGTGAGATTATTCAC AAAGACCCAACTTGTTTTCCTGTTTTGCATGAAATGGGTCTTCCAGATGCATTTTTATCCTCAGTGTTAGCTGGAGTTCTTCCTGCCTCAAAGGCTCTTA CATGTGTTCCTAATGGTCTTGGTGCCATCTGTCTTAATGCAAAAGGTTTAGAGGCAGTGAAAGAAACTTCTGCTTTACGGTTCCTTGTTGATATCTTCAC CAGCAAAAAATATGTTTTAGCGATGAATGAAGCCATTGTTCCTTTGGCAAATGCAGTGGAAGAGCTTTTGCGTCATGTATCTTCATTGAGAAGCACTGGT GTTGATTTAATTATTGAGATTATTGATAAAATTGCTTCCTTCGCGGACAGTAACTGCTCATCATCAGGGAAAGTTGTTGGCAGCACTGCAATGGAAATGG ATGCCGAGAACAAGGATAGTGAAGGGCATTGCTGTTTGGTTGGTGGTGTTGATTCAGGTGCAGAAGGAATCAGTAATGATCAGTTCATCCAGCTAGGTAT TTTTCATATGATGGTGCTGCTTCACAGAACAATGGAAAATGCTGAAACATGTCGGTTATTTGTGGAGAAGTCAGGGATAGAATTTTTGCTGAGGCTTCTA TTACAGCATAACATTGTCCAATCATCAGAAGGAATGTCTATAGCTTTGCATAGCACTATGGTTTTCAAGGGTTTTACCCAGCACCACTCTGCACCTCTGG CACATGCATTCTGTGGCTCCCTTAGGGATCATTTAAAGAAAGCTTTGACTGGATTTGGCATGGATTCTGGGTCCTTTTTGCTTGATCCCAGGACAATGCC AGATGATGGAATCTTTTCATCACTTTTCCTTGTTGAGTTCCTTCTATTTCTTGCTGACTCAAAAGAGAACCGCTGGGTAACTGCACTGCTAACAGAATTT GGAAATGGTAGCAAAGATGTTCTGGAGGATATTGGACGAGTGCAGCGAGAAGTTCTTTGGCAGATTGCTTTGCTTGAAGATGCTAAGCCTGAGGTGGAGG ATGATGGCACTAGTTCTGCTGCTGAGTCACAAGAGTCTGAACTGGGCACAAATGAAACTGAAGAGCAACGAATTAACTCCTTCAGGCAGTTTCTTGATCC ATTATTGAGAAGGACATCTGGGTGGAGTTTTGAATCCCAGTTTTTTGATCTTATAAATCTGTACCGTGATCTTGGTCGTGCTACAACTGGATTTCAACAA AGGCTAGGTACTGATAGTTCTATAAACCGGTTTGGATCTACTCAACATCCACGTCATACTGAATCTTCAGACACTGCTGGTGCTATCAGTAGGAAAGAAT ATGACAAACAGAGATCTTATTATAGTTCTTGCTGTGACATGGTGAGGTCGCTTTCTTTTCACATAACTCATCTGTTTCAAGAATTGGGAAAGGCAATGCT GCTTCCTTCTCGTAGGCGGGAAGATACTGTGAATGTTTCCCCATCTTCCAAGGTAGTGGCTTCTACTTTGGCTTCCATTTCATTGGATCACATGAGTTTT GGTGGTCATGTAAGTTCTGGATCTGAGGCATCTGTATCAACCAAGTGTCGCTACTTTGGCAAGGTTGTTGATTTCATTGATGGCATATTATTGGACAGAC CAGATTCCAGTAATCCAATACTGTTAAATTGTTTATATGGACATGGAGTTGTTCAATCTGTTTTGACCACATTTGAAGCCACTAGTCAATTGCTCTTCAC TGTTAACAGGACCCCTGCATCCCCTATGGAGACTGATGATGGGAATATAAAACATGACAATAAAGAAGAGGCTGATCATTCATGGATTTATGGTCCCTTA GCTAGCTATGGTAAACTTATGGACCACCTGGTGACATCATCATTGATTTTGTCTCCGTTTACAAAGAACTTGCTTGTGCATCCTCTGGTAAATGGAGTTA TTCCTTTTCCACGGGATTCTGAAACTTTTGTTAAAGTGCTCCAGTCTATGGTGCTCAAGGCAGTGCTACCTGTTTGGACTCACCCACAGTTTGCTGATTG TGGTAACGATTTCATCAGTGCAGTTATTTCCATCATCAGGCATGTTTATTCAGGGGTTGAAGTGAAAAATGCAAACAGCAGCACGAGTGCCCGTATCACT GGTCCTCCCCTGAATGAAACAACTATTTCAACCATTGTTGAGATGGGTTTTTCCAGGTCTAGGGCAGAAGAAGCTCTGAGGCAAGTTGGATCAAATAGTG TAGAACTGGCAATGGACTGGTTATTCTCCCATCCCGAGGAAGCTCCAGAAGATGATGAACTTGCTCGCGCACTTGCCATGTCTTTGGGGAACTCAGAATC AGATGCAAAGGAAGATGCTGCAACTGCCAATAGCCAACAGCTTGAAGAAGAGATGGTCCAACTTCCTCCAGTCGAGGAGTTGTTGTCAACATGCACAAAG CTTCTGCAAGTGAAGGAGCCTCTAGCTTTTCCAGTTCGGGACCTCCTTCTGTTGATATGCTCACAGAATGATGGTCAATACAGGTCTAATGTCATCTCGT TTATTCTTGATCAAGTGAAGCAAAGCAGTCTGGTCTCTGATAGCAGAAATAATACCATGATATCTGCTCTTTTTCATGTTCTTGCCTTGATACTTCATGA AGATGCGGTGTCACGTGAAATTGCGTTAAAGGATGGTCTGGTTAAAATTGCATCAGATTCACTTTCACAGTGGGATTCTGGTTCAATTGACAAAGAGAAA AAACAGGTTCCAAAGTGGGTAACGACAGCTTTTCTTGCGATGGATCGGCTACTGCAGGTGGATCAGAAATTGACATCTGAAATTGTGGAGCAGTTGAAGA GGGATGATGTCAGCAACCAACAAATCTCAATCAGTATTGATGAGGATAAGCAAAACAAATTGCAATCTCCACTGGCGTCACCTACAAAGCACATAGATGT AGATGAGCAGAAGAGACTTATTAAGATTTCTTGCAGTTGTATCAGGAACCAGCTTCCATCTGAAACAATGCATGCTGTGCTGCAGCTATGTTCCACACTC ACGAGAACTCATTCTGTAGCTGTTTGTTTTCTTGAAGCTGAGGGTGTGAGTTTGCTTCTTTCTTTGCCAACAAGTAGCCTCTTTTCTGGATTTGATAATA TTGCTGCTACTATTATCCGTCATGTCCTTGAAGATCCTCAAACCCTCCAGCAAGCAATGGAAGCTGAGATAAGGCATAAACTTGTTACTGCTGCTAACCG ACATTCAAATGGAAGGGTCACTCCACGCAATTTTCTTCTGAATTTAAGTTCTGTCATCTCTCGGGATCCAACAATTTTTATGCAGGCTGCACAATCTGTT TGTCAAGTTGAGATGGTAGGTGACAGGCCTTACATTGTGTTGCTGAAAGATCGTGAGAAAGATAAATCCAAAGAGAAAGAAAAGGAGAAGGAGAAAGCTT TGGAAAGAGAGAAACCACATGCTGGTGATGCGAAGGTTACTTTGGGCAGTATGAATACATCATCACCTGGGTATGTGCATGGGAAACTTCATGATATGAA TTCAAAGAGTTCCAAAGCTCACCGAAAATCTCCCCAGAGCTTTGTACATGTTATTGAGCTTCTTTTGGATTCAATCAGCAGTTTTGTACCTCCCTTGAAA GATGATGTTGTGACTGATGTGCCATTATCCGTGGATATGGATATTGATGCTGCTGCAACTAAAGGTAAAGGAAAAGCAGTAGCCACTGTTTCTGAAGAGA ATGGGACCAGTTGCCAAGAAGCATATGCAGTGCTTGCAAAGGTTGTTTTTATCCTAAAGCTTTTGACTGAGATTGTGCTAATGTATCCTTCATCTGTTCA TGTGCTTCTTAGAAGGGATTCTGAAGTTAGTAGTTGCCGGGGCCCTAATCTTCAGAAGGGTTCCGCTGGTTTGTGTACTGGAGGTATATTTCACCATATT CTTCACAAGTTCATTCCGAGTTCTCGAAATATGAAGAAGGAAAGGAAAATAGATGGTGACTGGAAGAATAAACTAGCTACTCGGGCAAACCAGTTTTTGG TAGCATCCAGTGTTCGTTCTGCTGAAGCAAGGAGGAGGGTCTTTGCTGAGATCAGTGACATTTTCTGTGAGTTTGTCGATTCTTGTGATGGCTTTAGGCC ACCAACCAATGATATGCAGACATATATTGATCTGCTAAATGATTTACTTGCTGCCCGTACACCTACTGGCTCATACATCTCCCCAGAAGCTTCTGCCACT TTTATAGATGTTGGTTTGGTTAGGTCTTTGACTCGAACTCTTGAAGTGTTGGATCTGGATCATACTGACTCACCTAAAGTTGTAACTGGGCTTATCAAAG CTCTGGAGTTGGTAACCAAAGAACATGTCAATTCTGCTGATTCTAATACTGGGAAAGGTGAGAGTTCAACAAAACCTCCTACAGAGAGTCAATCTGTCAG AACAGAGAATATTGTTGAGATTTCCCAGTCAACTGAAATGGGCTCACAATCCAACCATGATGCTATGTCAGCTGACCATGCCGAATCATTTAATGCCATC CAAAACCTTGGTCGATCTGAGGCTGTTACAGATGACATGGATCATGATCAGGATCTTGATGGAGGTTTCGCTCCTGCTACTGAGGATGACTTTATGCAAG AAACTTCTGAGGATATGAGGAGTCTTGAAAATGGCATGGATACTGTTGGGATAAGATTTGATATCCAGCCTCGTGGGCAAGAAACTCCGGATGAAGATGA GGATGAGGATGAAGAGATGTCTGGAGATGAGGGGGATGAAGTAGATGATGACGATGATGAAGATGACGAGGAGCATAATGGTTTGGAAGAAGATGAAGTC CATCACTTGCCACATCCCGACACAGATCAAGATGATCATGATATTGATGATGATGAGTTTGATGAGGAAGTGCTGGAGGAAGACGATGAAGATGAGGAGG AAGATGATGGAGTTATTCTCCGGCTGGAGGAGGGCATCAATGGGATAAATGTTTTTGACCACATCGAGGTTTTTGGTAGAGACCATGCCTTTGCCAATGA TACTCTCCATGTTATGCCAGTTGAAGTTTTTGGTTCTAGACGTCAAGGGCGTACTACATCAATTTACAATCTTCTTGGTAGAGGTGGCGACAGTGCTGCC CCCTCACGACATCCCCTTTTAGTTGGACCTTCATCATCAAATTTGGGCCTTCCCAGACAAGCAGAAAATGCCCGCGATATGGTTTTTACAGATAGGAACT TGGAGAGCACCTCATTACAGCTGGATACTATTTTCCGCTCGTTGCGTAATGGGCGTCATGGAAACCGTTTGAACCTGTGGATGGATGACAATCAGCAAAG TGGTGGATCTAATGTATCTGTTCCCACAGGCCTTGAGGAGTTGCTTGTCTCTCATTTGAGACAGCCAAACACTGAAAAACTCTCTGATCCAAACACATTG ACAGGGGAGCCTAAACGCAATGGTGAGAACGTTCAGTTACAGGAACCAGAAGCAGACACGCACCCTGACATCCAAGTTGAAAACAATGCAAACCTTGAGG GCAGCAATGCACCAACTACCACTTCCATAACAATTGATGGACCTGGCAATGTTGAGATCGGACTGGCAGCAAGTGAATCTCACACACAATCTGTTGAAAT GCAGTTAGAACAGAATGATGCTGCTGCCCGTGATGTTGAGGCAGTAAGCCAAGAAAGCAGTGAAAGTGGGGCAACTTTAGGGGAAAGCCTTCGGAGTCTT GATGTTGAAATTGGAAGTGCTGATGGTCATGATGATGGTGGAGAAAGGCAAGGTTCGGCAGATAGAATGCCTTTGGATCCACAGTCAACTCGGATAAGGA GAACGAGCATGTCTTTTGGAAATTCTACTCTTGCAACTGGGAGAGATGCATCTCTTCATAGTGTGACTGAGGTATCTGAAAATTCTAGCAGGGAAGCAGA GCAAGATGGTCCAGCTGTGGAACAGCAGATTGGTGGTGATACTGGATCTGGATCAATTGACCCTGCTTTCTTGGATGCCCTTCCTGAGGAATTGCGTGCT GAAGTCCTCTCTGCTCAACAGGGTCAAGTGTCACAGCCTTCAAATGCAGAACCACAAAACATGGGAGATATTGATCCAGAGTTCCTTGCAGCCCTTCCCC CAGACATCCGGGCAGAGGTTTTAGCACAACAACAAGCACAAAGACTTCATCAATCTCATGAACTGGAAGGTCAACCTGTTGAGATGGACACAGTCTCAAT CATTGCAACATTCCCTTCAGATTTGCGTGAAGAGGTTCTCCTAACATCATCTGATGCTATTCTTGCCAATCTCACACCCGCCCTTGTTGCGGAGGCTAAC ATGTTGCGAGAAAGATTTGCTCATCGTTATAGCAATCGCAATCTCTTTGGTATGTACCCTAGAAGTCGTAGAGGTGAGTCTTCTCGACGGGGTGAAGGTA TTGGATACAGTCTGGAAAGAGCTGGGATTGCCTCCCGTAGGTCTATGACTGCTAAGCTTGTTGAAGCTGATGGAGCTCCTTTAGTTGAGACAGAATCTCT TCAAGCAATGATTCGGGTGCTTCGCATAGTTCAGCCGCTGTATAAAGGACCACTACAAAGGCTTCTCCTGAATTTATGTTCTCATGGTGAAACCAGAGCT ACTCTGGTAAAAATCCTGATGGATATGCTGATGGTTGATAAAAGAAGGCCTGCCAATTATTCAAATGTTGCTGAGCCATTGTATCGACTCTATGCTTGCC AGAGCAATGTGATGTATTCGCGTCCACAGTCTTTCGATGGAGTTCCACCCTTGCTGTCTCGGCGTATCCTTGAGATGCTGACTTACTTGGCTCGAAACCA TCCCTATGTGGCAAAAATTTTACTTCAGTTTAGACTGCCGCTCCCTGCACTAAGGGAGACAGAGAATACTGAGCAGGCACGTGGCAAAGCTGTGATGATT GTAAGGGAAGATGATAGAAAGCAGCACGAGGAAGGATACATATCTATTGCCTTACTCTTGAGCCTCTTGAACCAACCTCTTTATTTGAGGAGCATAGCAC ATCTTGAACAGCTGCTTAACTTATTGGAGGTTATCATTGACAATGCTGAAAACAAAACAAGTTTATCAGATAAAACCGAGGCTGCCACTGAACAACCATC TGGCCCCCAAAATTCCAGTTCAGATGCTGACATGAATACTGAAGTTGGTGCTACCACTTTAGGCGTTGCTGGTTCATCTTCCGCCAAACCCACTTCTGGT GCAAATAGTGAATCAGATGCTCAAATCATACTGCTTAACCTGCCACAAGCAGAACTTCGACTTCTATGCTCATTGCTAGCACGGGAAGGTTTGTCAGATA ATGCTTATACTCTTGTGGCGGAGGTAATGAAGAAGCTGGTTGCCATTGCTCCAACCCACTGTCATCTATTTATTACAGAGCTAGCCAATGCTGTTCAAAC TTTGACAAAATCTGCCATGGTTGAGTTACGCATGTTCGGTGAAGCAGTGAAAGCACTTCTCAGTACAACATCCTCTGATGGAGCTGCAATTTTGAGGGTT TTGCAGGCATTAAGCTCCCTTGTTACTTCACTAGTTGAGAAAGAGAAGGATCAGCATCTTCCTCCAGAAAAAAAGCATACTGCTGCTCTCTCTCTGGTAT GTGACATCAATGCAGCTTTAGAGCCTTTGTGGTTGGAGCTGAGCACCTGCATAAGCAAAATAGAGAGCTATTCAGATTCTGCTCCTGATTTGCTACCGAG AACTTCTACATCTAAGACATCTGGTGTGATGCCTCCACTTCCAGCAGGATCACAGAACATCTTACCATACATAGAGTCCTTCTTTGTGATGTGTGAGAAG TTGCATCCTGCACAGCCAGGTTCCAGCCATGACTATAGTATTACAGTTTCTGAGGTTGAAGATGCGAGCTCATCTGCTGCCCAGCAGAAAACCTCAGTCC CTGGTTTGAAAGTCGATGAGAAACATGCTGCTTTTGTCAAGTTCTCAGAGAAACACAGGAAGCTGCTTAATGCTTTCATCCGTCAAAATCCTGGGTTGCT TGAGAAGTCTTTCTCACTCATGCTGAGGGTTCCGCGTTTTGTTGATTTTGACAACAAGCGAGCCCACTTCAGATCAAAAATAAAACACCAGCATGATCAT CATCACAGTCCTTTAAGAATTTCTGTGAGAAGAGCTTACATTCTTGAAGATTCATACAATCAACTTCGCATGCGATCAACCATAGATTTGAAAGGGAGGC TGACTGTTCACTTTCAAGGAGAGGAAGGAATTGATGCAGGTGGACTGACGAGGGAATGGTACCAGCTGTTATCCAGAGTTATTTTTGACAAGGGAGCACT GCTGTTTACAACAGTTGGCAATGAATCAACGTTTCAGCCTAACCCAAACTCTGTTTACCAAACAGAACATCTATCATACTTCAAATTTGTTGGAAGAGTT GTTGGGAAAGCACTTTTTGATGGTCAACTTTTGGATGTCCATTTCACTCGATCCTTTTACAAGCATATTTTAGGAGTTAAAGTTACATATCATGACATTG AAGCTATTGATCCTGATTACTTTAAAAACCTGAAGTGGATGCTTGAGAATGATATAAGTGATGTTCTGGATCTCACTTTCAGCATTGATGCTGATGAGGA GAAGCTTATACTGTATGAAAAAAATGAGGTGACGGACTATGAACTCATTCCTGGTGGGCGTAACATTAAAGTCACAGAGGAGAATAAGCACCAGTATGTT GATTTAGTTGCTGAGCATCGTTTGACAACCGCTATTCGTCCTCAAATAAATGCCTTCTTGGAAGGATTCACTGAATTAATTTCCAGGGAATTAATTTCAA TTTTTAATGACAAGGAGTTGGAATTATTGATAAGTGGACTTCCAGATATTGATTTGGATGACATGAGGACCAATACTGAGTACTCTGGATACAGCCCAGC ATCTCCTGTCATACAGTGGTTCTGGGAGGTTGTTCAAGGATTCAGCAAGGAGGATAAGGCTCGGCTTCTGCAGTTTGTGACGGGCACATCCAAGGTGCCT TTGGAAGGCTTTAGTGCTCTCCAAGGAATCTCAGGTTCACAAAAGTTCCAGATACACAAGGCTTATGGGAGCCCTGATCACTTGCCCTCAGCTCATACTT GTTTCAATCAATTGGACTTACCGGAGTATCCTTCAAAACAACATTTGGAAGAGAGGTTGCTACTTGCCATTCATGAAGCCAGTGAAGGGTTTGGATTCGG TTAA
AA sequence Show only first row Show all	>Potri.002G110500.1 pacid=42778199 polypeptide=Potri.002G110500.1.p locus=Potri.002G110500 ID=Potri.002G110500.1.v4.1 annot-version=v4.1 MATIRSSLPSRLRQLLSGDSIIGPSIKLDSETPPKIKAFVDKVIQSPLQDIAIPLSGFRWEYSKGNFHHWRPLFLHFDTYFKTYLSSRNGLSLSDNISED DSPFPKHAVLQILRVMQIILENCHDKSSFDGLEHFKLLLASTDPEVLIATLETLSALVKINPSKLHGSGKLIGCGSVNSYLLSLAQGWGSKEEGLGLYSC VMANERTQEEGLCLFPSDEENELDKSQHRIGSTLYFELHGLTAQNTMENSSNTTSSLRVIHTADLHLQKEDDLQLMKQYIEQYNVPPDLRFSLLTRIRYA RAFRSPRVCRLYSRICLLAFIVLVQSGDANDELTSFFANEPEYTNELIRIVRSEETVPGTIRTLAMLALGAQLAAYTASHERARILSGSSISFAAGNRMI LLNVLQKAVLSLKNSNDPSSLAFVEALLQFYLLHIVSSSASGSNVRGSGMVPTFLPLLEDSDPSHMHLVYLAVKALQKLMDYSSSAVSLLRELGGVELLA QRLQIEVHRIIGLAGEIDNSVTIGECSRFSDDHIYSQKRLIKVLLKALGSATYAPAGNARSLNSHDSSLPSTLSLIYKNADKFGGDIYYSAVTVMSEIIH KDPTCFPVLHEMGLPDAFLSSVLAGVLPASKALTCVPNGLGAICLNAKGLEAVKETSALRFLVDIFTSKKYVLAMNEAIVPLANAVEELLRHVSSLRSTG VDLIIEIIDKIASFADSNCSSSGKVVGSTAMEMDAENKDSEGHCCLVGGVDSGAEGISNDQFIQLGIFHMMVLLHRTMENAETCRLFVEKSGIEFLLRLL LQHNIVQSSEGMSIALHSTMVFKGFTQHHSAPLAHAFCGSLRDHLKKALTGFGMDSGSFLLDPRTMPDDGIFSSLFLVEFLLFLADSKENRWVTALLTEF GNGSKDVLEDIGRVQREVLWQIALLEDAKPEVEDDGTSSAAESQESELGTNETEEQRINSFRQFLDPLLRRTSGWSFESQFFDLINLYRDLGRATTGFQQ RLGTDSSINRFGSTQHPRHTESSDTAGAISRKEYDKQRSYYSSCCDMVRSLSFHITHLFQELGKAMLLPSRRREDTVNVSPSSKVVASTLASISLDHMSF GGHVSSGSEASVSTKCRYFGKVVDFIDGILLDRPDSSNPILLNCLYGHGVVQSVLTTFEATSQLLFTVNRTPASPMETDDGNIKHDNKEEADHSWIYGPL ASYGKLMDHLVTSSLILSPFTKNLLVHPLVNGVIPFPRDSETFVKVLQSMVLKAVLPVWTHPQFADCGNDFISAVISIIRHVYSGVEVKNANSSTSARIT GPPLNETTISTIVEMGFSRSRAEEALRQVGSNSVELAMDWLFSHPEEAPEDDELARALAMSLGNSESDAKEDAATANSQQLEEEMVQLPPVEELLSTCTK LLQVKEPLAFPVRDLLLLICSQNDGQYRSNVISFILDQVKQSSLVSDSRNNTMISALFHVLALILHEDAVSREIALKDGLVKIASDSLSQWDSGSIDKEK KQVPKWVTTAFLAMDRLLQVDQKLTSEIVEQLKRDDVSNQQISISIDEDKQNKLQSPLASPTKHIDVDEQKRLIKISCSCIRNQLPSETMHAVLQLCSTL TRTHSVAVCFLEAEGVSLLLSLPTSSLFSGFDNIAATIIRHVLEDPQTLQQAMEAEIRHKLVTAANRHSNGRVTPRNFLLNLSSVISRDPTIFMQAAQSV CQVEMVGDRPYIVLLKDREKDKSKEKEKEKEKALEREKPHAGDAKVTLGSMNTSSPGYVHGKLHDMNSKSSKAHRKSPQSFVHVIELLLDSISSFVPPLK DDVVTDVPLSVDMDIDAAATKGKGKAVATVSEENGTSCQEAYAVLAKVVFILKLLTEIVLMYPSSVHVLLRRDSEVSSCRGPNLQKGSAGLCTGGIFHHI LHKFIPSSRNMKKERKIDGDWKNKLATRANQFLVASSVRSAEARRRVFAEISDIFCEFVDSCDGFRPPTNDMQTYIDLLNDLLAARTPTGSYISPEASAT FIDVGLVRSLTRTLEVLDLDHTDSPKVVTGLIKALELVTKEHVNSADSNTGKGESSTKPPTESQSVRTENIVEISQSTEMGSQSNHDAMSADHAESFNAI QNLGRSEAVTDDMDHDQDLDGGFAPATEDDFMQETSEDMRSLENGMDTVGIRFDIQPRGQETPDEDEDEDEEMSGDEGDEVDDDDDEDDEEHNGLEEDEV HHLPHPDTDQDDHDIDDDEFDEEVLEEDDEDEEEDDGVILRLEEGINGINVFDHIEVFGRDHAFANDTLHVMPVEVFGSRRQGRTTSIYNLLGRGGDSAA PSRHPLLVGPSSSNLGLPRQAENARDMVFTDRNLESTSLQLDTIFRSLRNGRHGNRLNLWMDDNQQSGGSNVSVPTGLEELLVSHLRQPNTEKLSDPNTL TGEPKRNGENVQLQEPEADTHPDIQVENNANLEGSNAPTTTSITIDGPGNVEIGLAASESHTQSVEMQLEQNDAAARDVEAVSQESSESGATLGESLRSL DVEIGSADGHDDGGERQGSADRMPLDPQSTRIRRTSMSFGNSTLATGRDASLHSVTEVSENSSREAEQDGPAVEQQIGGDTGSGSIDPAFLDALPEELRA EVLSAQQGQVSQPSNAEPQNMGDIDPEFLAALPPDIRAEVLAQQQAQRLHQSHELEGQPVEMDTVSIIATFPSDLREEVLLTSSDAILANLTPALVAEAN MLRERFAHRYSNRNLFGMYPRSRRGESSRRGEGIGYSLERAGIASRRSMTAKLVEADGAPLVETESLQAMIRVLRIVQPLYKGPLQRLLLNLCSHGETRA TLVKILMDMLMVDKRRPANYSNVAEPLYRLYACQSNVMYSRPQSFDGVPPLLSRRILEMLTYLARNHPYVAKILLQFRLPLPALRETENTEQARGKAVMI VREDDRKQHEEGYISIALLLSLLNQPLYLRSIAHLEQLLNLLEVIIDNAENKTSLSDKTEAATEQPSGPQNSSSDADMNTEVGATTLGVAGSSSAKPTSG ANSESDAQIILLNLPQAELRLLCSLLAREGLSDNAYTLVAEVMKKLVAIAPTHCHLFITELANAVQTLTKSAMVELRMFGEAVKALLSTTSSDGAAILRV LQALSSLVTSLVEKEKDQHLPPEKKHTAALSLVCDINAALEPLWLELSTCISKIESYSDSAPDLLPRTSTSKTSGVMPPLPAGSQNILPYIESFFVMCEK LHPAQPGSSHDYSITVSEVEDASSSAAQQKTSVPGLKVDEKHAAFVKFSEKHRKLLNAFIRQNPGLLEKSFSLMLRVPRFVDFDNKRAHFRSKIKHQHDH HHSPLRISVRRAYILEDSYNQLRMRSTIDLKGRLTVHFQGEEGIDAGGLTREWYQLLSRVIFDKGALLFTTVGNESTFQPNPNSVYQTEHLSYFKFVGRV VGKALFDGQLLDVHFTRSFYKHILGVKVTYHDIEAIDPDYFKNLKWMLENDISDVLDLTFSIDADEEKLILYEKNEVTDYELIPGGRNIKVTEENKHQYV DLVAEHRLTTAIRPQINAFLEGFTELISRELISIFNDKELELLISGLPDIDLDDMRTNTEYSGYSPASPVIQWFWEVVQGFSKEDKARLLQFVTGTSKVP LEGFSALQGISGSQKFQIHKAYGSPDHLPSAHTCFNQLDLPEYPSKQHLEERLLLAIHEASEGFGFG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.002G110500 [exp]	0	1
AT2G17930			Phosphatidylinositol 3- and 4-...		Potri.005G114300 [exp]	2.64	0.8923
AT1G55860		UPL1	ubiquitin-protein ligase 1 (.1...		Potri.001G368600 [exp]	3.16	0.8803
AT4G38600		UPL3, KAK	UBIQUITIN-PROTEIN LIGASE 3, KA...		Potri.009G134300 [exp]	3.46	0.8507
AT1G02890			AAA-type ATPase family protein...		Potri.014G131000 [exp]	4.24	0.8241
AT2G26780			ARM repeat superfamily protein...		Potri.001G274500 [exp]	4.89	0.8217
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Potri.006G198300 [exp]	5.56	0.7837	Pt-UBP12.2
AT3G17850			Protein kinase superfamily pro...		Potri.012G044700 [exp]	8.00	0.8107
AT3G62900			CW-type Zinc Finger (.1)		Potri.002G209409 [exp]	8.48	0.8443
AT3G48050		SUO	'shuttle' in chinese, BAH doma...		Potri.015G072900 [exp]	12.64	0.8361
AT1G58230			binding (.1)		Potri.002G111000 [exp]	13.07	0.8186

Compare expression of checked genes

Potri.002G110500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.