Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G22610 1057 / 0 Di-glucose binding protein with Kinesin motor domain (.1.2) AT1G72250 699 / 0 Di-glucose binding protein with Kinesin motor domain (.1.2) AT5G27550 506 / 1e-165 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT2G47500 352 / 6e-105 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT5G27000 345 / 1e-102 KATD, ATK4 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) AT1G73860 345 / 3e-102 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G41310 338 / 2e-100 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) AT3G44730 337 / 6e-99 AtKIN14h, ATKP1 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) AT1G18410 333 / 3e-97 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G63640 326 / 5e-95 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1), P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G436200 [exp] 750 / 0 AT1G72250 1248 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.011G140000 [exp] 746 / 0 AT1G72250 1201 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Potri.013G020700 [exp] 510 / 6e-167 AT5G27550 862 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G030271 [exp] 504 / 8e-165 AT5G27550 865 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.005G021100 [exp] 355 / 9e-106 AT2G47500 1051 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Potri.013G011500 [exp] 349 / 1e-103 AT5G27000 1081 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Potri.001G467600 [exp] 345 / 1e-101 AT3G44730 1266 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.011G165200 [exp] 343 / 4e-101 AT3G44730 1300 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Potri.002G201000 [exp] 341 / 6e-101 AT2G47500 1237 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035954 [exp] 1119 / 0 AT2G22610 1302 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10025708 [exp] 1065 / 0 AT2G22610 1238 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10005582 [exp] 717 / 0 AT1G72250 1109 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10013714 [exp] 713 / 0 AT1G72250 1098 / 0.0 Di-glucose binding protein with Kinesin motor domain (.1.2) Lus10004487 [exp] 500 / 8e-163 AT5G27550 881 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029914 [exp] 494 / 8e-161 AT5G27550 905 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10029865 [exp] 342 / 2e-101 AT5G27000 1014 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1) Lus10009851 [exp] 333 / 2e-98 AT2G47500 1245 / 0.0 P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain (.1) Lus10032897 [exp] 336 / 4e-98 AT3G44730 1302 / 0.0 ARABIDOPSIS KINESIN-LIKE PROTEIN 1, kinesin-like protein 1 (.1) Lus10015212 [exp] 330 / 7e-98 AT5G27000 924 / 0.0 KINESIN-LIKE PROTEIN IN ARABIDOPSIS THALIANA D, kinesin 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00225 [poplar] [flax] Kinesin Kinesin motor domain CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.002G110600.1 pacid=42779202 polypeptide=Potri.002G110600.1.p locus=Potri.002G110600 ID=Potri.002G110600.1.v4.1 annot-version=v4.1 ATGGATTCCATGCTGTGCGTTTCGGGTTCGAGATCGATCCAGTCAGGGTTAACAAACACCAATAATTTCAAAGAGAGGCCAGTTATATTTGTAAACGCGG GAGGCGGGGCTATAAAGAAAGAGGGGGATATCAATCTTGATATTGAGAAAGATTGCTGTTTTGAAGGTGGAGATGTTATAAGAACAGATGAGAGCATAAT CAATGGTGGTGATATACCTTCTGTTTATCAATCAGCAAGGTTTGGTACCAACTTGAGTTACAAGTTCAATGACATGCCGGCTGGAGAGTATTTGGTTGAT CTTCATTTTGCAGAGATAGTTTACACTAACGGTCCTAAGGGAATGAGAGTCTTTGATGTCTTTATTCAAGAAGAGAAGGTTATATCAGAGCTTGATGTGT ACTCTATTGTTGGTGACAACAAACCGTTGCAAGTGGTGGATGTTAGGGTTTCTGTCGGGGAAGATGGGGTGATTTTTATGAGGTTTGATGGGGTTGTAGG GAGCCCAATAGTTAGCGGGATCTATATAAAGCAGGCGACAGAATTGCCAAAATCTTCGGTTAAACAGGAGCTTTCACTGTGTAACAATTGCGCCGCTGAA GTAAAAGTTTCATCTGATCAGAATAGAGTTATGAGGACGAACTCTTTAGCGAGGTATGAAAAGAAGATAGAGGAATTGAAGGCTCAATGCCAACTCAAGA CAGATGAATGCCACGAGGCCTGGATGTCACTGACTGCGGCGAACGAGGAACTCGAGAAGATTAGGATGGAACTTGACAACAGGTTCTTCAGAAATATGCA ATTAGATCAAGCCATGCAAAAGCAAAAGGCAGAATTGAGAGATGTTTCTAGACGATATGAGTGTGATAAGAAACTGTGGGCTGCAGCCATTGATGATTTT GAAAAGAAAATAAAGATGATGAAGATAGAGCACTCGCAACTCTTCCATGATGCTCATGCGTGTGCCAATACAATTCCTGAATTAAACAAGATGATAATTG CAGTTCGAGACATAGTTGCGCAACATGAAGACCTCAAACTGAAGTTAAATGAAGAGCAGGCAAAGAGTAAGAAGCTTTATAACCAAGCGCTGGAGGCAAA GGGGAACATAAGAGTGTTCTGTAGGTGCCGCCCGTTGACTAAGGAGGAGATGTCAATTGGCTGTCAAACAGTGGTAGATTTTAGTGCTGCTAAGGATGGT GATCTTACAGTAATTACAAATGGCTCCACTAAGAAAAATTTCAAATTTGATCGAGTCTACGCTCCCAAGGACGATCAAGTTGATGTCTTCGCGGATGCTT CTGCTCTGGTGACCTCCGTGTTAGATGGTTACAATGTTTGCATATTTGCATACGGGCAAACTGGAACCGGAAAGACTTTCACTATGGAAGGTACCAAGCA AAACCGAGGAGTCAACTACCGAACTTTACATCAATTATTTAAAATTGCTCAGCAAAGGAAAGAAACTGTCACATATGACATTTCTGTTAGCGTACTTGAA GTTTACAATGAGCAAATCAGAGACTTGCTAGCCACCTCAACAACAACAACAAAGAGGTTGGATATAAAACAAGTATCTGATGGGGTCCAGCATGTTCCGG GGATAGTTGAAGCAAAGGTCGAGAATATTAAGCAGGCCTGGGATGTTTTGCAGGCTGGAAGCAATGCAAGGGCCGTGGGGTCAAACAATGTGAATGAACG TAGTAGCCGATCTCATTGCATGCTTTGCACAATGGTCAGAGCAAAGAACTTGGTAAATGATGAGTGCACTATGAGCAAGCTATGGCTTGTGGACTTGGCA GGCAGTGAGAGGCTGGCAAAAACAGAGGTTCAAGGGGAACGACTCAAGGAAGCTCAAAATATAAACAGATCACTTTCAGCTCTTGGGGATGTTATTTCTT GTTTGGCAAATAAGAGTAGTCATATTCCATACAGAAACTCGAAGCTCACACATTTACTCCAGGATTCGTTGGGAGGTGATTCGAAAACCCTTATGTTAGT GCAAATCAGCCCTTCTGAGCATGACATAGGAGAGACTCTGAGTTCTCTAAACTTCGCAACTCGGGTTCGAGGGGTTGAGTTGGGTCCTGCGAAGAAGCAG ATTGATATGGGTGAGCTTCAAAAGTTCAAAACAATGCTTGACAAAGCAAAGCAAGAATTGAGATCTAAAGATGATGCCATGCGCAAGCTAGAAGAGGGTT TTCAAAATGTAGAAGGTAAGGCCAAAGTCAAGGATCAGCTTTTCAAAAACCAACAGGAAAAGGTCAATGAACTAGAGAGTCAACTTGCATCAAAGACAGA GTTATGCAGACAGCTAGAGAAGCAGCTGTTACAACTTTCAGAAGGAAAGAAGGAAAAGGAAGAAATTTGCTCAGATTTCCAGCAGAAGGTCAACGAGCTT GAGAAGAAGCTGAAAGAGCAGGAAGAAGCAGCGTCTATGAATCTTCATTGCAAGGTCAAGGAGCTTGAAAACAGAATGAAAGAGAGAACACAGGAGTTCG AGCTTCATACAAAGAGTCTCCAACAAAAGGTCAAGGAGCTTGAAAACAGAATGAAAGAGAGAACACAGGAGTTCGAGCTTCATACAAAGAGTCTCCAACA AAAGTTGAAGGAAGCTGAAAACAAACTATGGGAGAAAGAAAATTCCGAATCTCAGTCACTTCAACACAAGATCAATGTTCTTGGAGAAGGGCTAAGACAA CATGAACAAGGAGATTGTTTGCCAAGGCCACCCTCTGCTGAAAAGTCAGAAGCCACTCCAGTTTTGTCAAGAATGGAAAACATATATGACGTTGATCCAC TTGGTCAAAAAAGCTTAAACTCCACGAACCGAACAATAAACCAAGAACCTAGCTTACTCCATGGAAATACATCCCTCCGTGAATTGAGGAGGAAAGGAGA CATTAAGAGCAGAGGGATGGAGAATAATTTCTTGATATCAGCTTCTTCGCTCGAGAAGAAGAGATTGCCATCTGAATCAAGCAAGGCAAAGCATCTTGAC TCTTCTAGAGCATCGGCAAAGATTACAACAAGTACAAAATCAATTCGTGGTGCTCAGAAGACAACCTCCAATACTGCAAACAGAATCAACAAAGATCAAG GTGCAGGAGCAAGAGATAACAAATTCAAAGTTTGGTTGAGGTGA
AA sequence Show only first row Show all	>Potri.002G110600.1 pacid=42779202 polypeptide=Potri.002G110600.1.p locus=Potri.002G110600 ID=Potri.002G110600.1.v4.1 annot-version=v4.1 MDSMLCVSGSRSIQSGLTNTNNFKERPVIFVNAGGGAIKKEGDINLDIEKDCCFEGGDVIRTDESIINGGDIPSVYQSARFGTNLSYKFNDMPAGEYLVD LHFAEIVYTNGPKGMRVFDVFIQEEKVISELDVYSIVGDNKPLQVVDVRVSVGEDGVIFMRFDGVVGSPIVSGIYIKQATELPKSSVKQELSLCNNCAAE VKVSSDQNRVMRTNSLARYEKKIEELKAQCQLKTDECHEAWMSLTAANEELEKIRMELDNRFFRNMQLDQAMQKQKAELRDVSRRYECDKKLWAAAIDDF EKKIKMMKIEHSQLFHDAHACANTIPELNKMIIAVRDIVAQHEDLKLKLNEEQAKSKKLYNQALEAKGNIRVFCRCRPLTKEEMSIGCQTVVDFSAAKDG DLTVITNGSTKKNFKFDRVYAPKDDQVDVFADASALVTSVLDGYNVCIFAYGQTGTGKTFTMEGTKQNRGVNYRTLHQLFKIAQQRKETVTYDISVSVLE VYNEQIRDLLATSTTTTKRLDIKQVSDGVQHVPGIVEAKVENIKQAWDVLQAGSNARAVGSNNVNERSSRSHCMLCTMVRAKNLVNDECTMSKLWLVDLA GSERLAKTEVQGERLKEAQNINRSLSALGDVISCLANKSSHIPYRNSKLTHLLQDSLGGDSKTLMLVQISPSEHDIGETLSSLNFATRVRGVELGPAKKQ IDMGELQKFKTMLDKAKQELRSKDDAMRKLEEGFQNVEGKAKVKDQLFKNQQEKVNELESQLASKTELCRQLEKQLLQLSEGKKEKEEICSDFQQKVNEL EKKLKEQEEAASMNLHCKVKELENRMKERTQEFELHTKSLQQKVKELENRMKERTQEFELHTKSLQQKLKEAENKLWEKENSESQSLQHKINVLGEGLRQ HEQGDCLPRPPSAEKSEATPVLSRMENIYDVDPLGQKSLNSTNRTINQEPSLLHGNTSLRELRRKGDIKSRGMENNFLISASSLEKKRLPSESSKAKHLD SSRASAKITTSTKSIRGAQKTTSNTANRINKDQGAGARDNKFKVWLR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G22610			Di-glucose binding protein wit...		Potri.002G110600 [exp]	0	1
AT5G40080			Mitochondrial ribosomal protei...		Potri.005G161600 [exp]	2.00	0.8156
AT3G25690		AtCHUP1, CHUP1	Arabidopsis thaliana CHLOROPLA...		Potri.001G460300 [exp]	15.77	0.8305
					Potri.005G070800 [exp]	24.39	0.7196
AT3G60830		ATARP7	actin-related protein 7 (.1)		Potri.009G060200 [exp]	27.38	0.6713	ARP902,Pt-ARP7.2
AT3G58650			unknown protein		Potri.008G108600 [exp]	30.13	0.7952
AT5G13840		FZR3	FIZZY-related 3 (.1.2)		Potri.008G057500 [exp]	30.44	0.7274
AT3G25980		MAD2	MITOTIC ARREST-DEFICIENT 2, DN...		Potri.010G055100 [exp]	41.49	0.7175	MAD2.2
AT1G13890		ATSNAP30, SNAP3...	soluble N-ethylmaleimide-sensi...		Potri.010G160350 [exp]	61.72	0.6696
AT2G25770			Polyketide cyclase/dehydrase a...		Potri.010G193200 [exp]	67.87	0.6655
AT4G24710			P-loop containing nucleoside t...		Potri.015G084900 [exp]	68.77	0.7239

Compare expression of checked genes

Potri.002G110600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.