Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G21175 229 / 3e-73 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT1G51600 221 / 5e-70 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT4G24470 176 / 2e-52 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT2G46670 55 / 8e-09 CCT motif family protein (.1) AT2G46790 56 / 1e-08 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G02810 56 / 2e-08 APRR7, PRR7 pseudo-response regulator 7 (.1) AT5G61380 56 / 2e-08 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) AT4G34680 55 / 2e-08 GATA GATA3 GATA transcription factor 3 (.1.2) AT1G08010 51 / 5e-07 GATA GATA11 GATA transcription factor 11 (.1.2) AT5G60100 51 / 7e-07 APRR3 pseudo-response regulator 3 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G152500 [exp] 542 / 0 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G116700 [exp] 275 / 8e-90 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042200 [exp] 270 / 4e-88 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.010G251600 [exp] 231 / 7e-74 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.002G110900 [exp] 213 / 9e-67 AT4G24470 253 / 2e-83 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.007G116550 [exp] 211 / 5e-66 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152800 [exp] 209 / 1e-65 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.017G042300 [exp] 70 / 1e-14 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.015G061900 [exp] 60 / 1e-09 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028166 [exp] 350 / 1e-116 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10032839 [exp] 201 / 2e-62 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 201 / 3e-62 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 164 / 8e-48 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10015720 [exp] 62 / 2e-10 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10000566 [exp] 62 / 2e-10 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019077 [exp] 62 / 2e-10 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10021629 [exp] 61 / 6e-10 AT5G61380 326 / 4e-103 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019899 [exp] 54 / 1e-07 AT5G02810 347 / 4e-109 pseudo-response regulator 7 (.1) Lus10037398 [exp] 53 / 1e-07 AT1G08010 169 / 1e-50 GATA transcription factor 11 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.002G110800.1 pacid=42779096 polypeptide=Potri.002G110800.1.p locus=Potri.002G110800 ID=Potri.002G110800.1.v4.1 annot-version=v4.1 ATGGCGGCGGCGAATCCACAGCCCCTACAGGCGCGTCCGTACAAGGACCACAGAACGCGAGCTCCAATACAGATCGAGGACGATGACGACGGAGAGTACG AAGACGGTGATGGTATGGATGACATGGAAGAGGAAGCAGCAGTAGCGCAAGTGAATTCAGGCGTGAGTGTGGCAGAGCACAACCACGGAGCTGGTGGTGG TGGTGGTGGTGTGGTTATAGCTTCGAGGACTAGTGAACTCACTCTCTCTTTTGAAGGAGAAGTTTACGTTTTCCCTGCTGTTACCCCTGAAAAGGTGCAA GCAGTGCTCTTGCTTCTGGGAGGACGAGATATACCTACTGCGGTACCTACTATTGAAGTGCAATATGATCAAAATAATAGGGGAGTGGGTGACACCCCAA AGCGCTCAAATCTTTCACGAAGAATAGCCTCTCTTGTTAGGTTCCGTGAAAAAAGGAAGGAGAGATGTTTTGACAAGAAAATAAGATACACTGTGCGAAA AGAGGTTGCACAGAGAATGCACCGCAAGAATGGGCAGTTTGCATCCATAAAAGAAAATCCAGGGGATTCAAGTTGGGACTCTGGTCAGAGTTGCCTTCAG GATGGCACCCCTCTTTCAGAAACTGTTGTCCGGAGATGTAAGCACTGTGGTGTTAGTGAAAATAATACTCCAGCAATGCGTCGTGGGCCAGCTGGACCTA GGACTTTATGCAATGCTTGTGGACTAATGTGGGCAAATAAGGGAACATTGAGGGATCTCAGTAAAGGAGGAAGGAATCTTCCAGTGGACCAAATAGAACC TGAAACACTGATCGAAGTCAAGCCTTCCATCATTGAAGGGGAATTCTCTGGTAACCAGGATGAGCATGGAACTGCTAAAGATCTTTCTAAGGCAGTTAGC GAAGGATTCAACAACCATTCTATCAATCCAGATGAGGTTTTCCAAGAAGCTACTGAAGATATTACAAATACTTTGCCAATGGGAGTTATCCATTCTTCCG GAGATGATGATGAGCAGGAACCACTGGTTGAGCTTGCCAATCCTTCAGATACAGATCTTGACATTCCTGCTAATTTTGATTAG
AA sequence Show only first row Show all	>Potri.002G110800.1 pacid=42779096 polypeptide=Potri.002G110800.1.p locus=Potri.002G110800 ID=Potri.002G110800.1.v4.1 annot-version=v4.1 MAAANPQPLQARPYKDHRTRAPIQIEDDDDGEYEDGDGMDDMEEEAAVAQVNSGVSVAEHNHGAGGGGGGVVIASRTSELTLSFEGEVYVFPAVTPEKVQ AVLLLLGGRDIPTAVPTIEVQYDQNNRGVGDTPKRSNLSRRIASLVRFREKRKERCFDKKIRYTVRKEVAQRMHRKNGQFASIKENPGDSSWDSGQSCLQ DGTPLSETVVRRCKHCGVSENNTPAMRRGPAGPRTLCNACGLMWANKGTLRDLSKGGRNLPVDQIEPETLIEVKPSIIEGEFSGNQDEHGTAKDLSKAVS EGFNNHSINPDEVFQEATEDITNTLPMGVIHSSGDDDEQEPLVELANPSDTDLDIPANFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G21175	GATA	GATA24, TIFY2B,...	ZIM LIKE 1, GATA TRANSCRIPTION...		Potri.002G110800 [exp]	0	1
AT3G17205		UPL6	ubiquitin protein ligase 6 (.1...		Potri.008G101300 [exp]	4.47	0.8289
AT1G73970			unknown protein		Potri.008G016000 [exp]	6.00	0.8326
AT3G07940			Calcium-dependent ARF-type GTP...		Potri.003G198301 [exp]	6.00	0.7918
AT4G14350			AGC (cAMP-dependent, cGMP-depe...		Potri.011G157000 [exp]	6.63	0.8373
AT4G25880		APUM6	pumilio 6 (.1.2.3)		Potri.003G009900 [exp]	8.36	0.8377
AT5G54080		HGO	"homogentisate 1,2-dioxygenase...		Potri.001G374100 [exp]	8.48	0.8024
AT3G09030			BTB/POZ domain-containing prot...		Potri.016G112900 [exp]	10.48	0.7841
AT4G25620			hydroxyproline-rich glycoprote...		Potri.012G144200 [exp]	10.67	0.8117
AT2G46270	bZIP	GBF3	G-box binding factor 3 (.1.2)		Potri.014G094200 [exp]	18.43	0.7926
AT4G33360		FLDH	farnesol dehydrogenase, NAD(P)...		Potri.002G127500 [exp]	18.81	0.7236

Compare expression of checked genes

Potri.002G110800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.