Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	ZIM.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24470 253 / 2e-83 GATA GATA25, TIFY1, ZIM Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) AT1G51600 206 / 3e-65 GATA GATA28, TIFY2A, ZML2 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) AT3G21175 204 / 3e-64 GATA GATA24, TIFY2B, ZML1 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) AT2G46670 56 / 4e-09 CCT motif family protein (.1) AT5G02810 57 / 8e-09 APRR7, PRR7 pseudo-response regulator 7 (.1) AT2G46790 56 / 9e-09 TL1, APRR9 TOC1-LIKE PROTEIN 1, Arabidopsis pseudo-response regulator 9, pseudo-response regulator 9 (.1.2) AT5G24470 54 / 8e-08 APRR5 pseudo-response regulator 5 (.1) AT5G60100 51 / 3e-07 APRR3 pseudo-response regulator 3 (.1.2.3) AT3G20750 50 / 4e-07 GATA GATA29 GATA transcription factor 29 (.1) AT5G61380 50 / 9e-07 AtTOC1, TOC1, APRR1, ARR1 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G152800 [exp] 461 / 7e-166 AT4G24470 264 / 1e-87 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Potri.007G116550 [exp] 225 / 2e-72 AT3G21175 228 / 3e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.010G251600 [exp] 211 / 5e-67 AT1G51600 298 / 9e-101 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.002G110800 [exp] 199 / 1e-61 AT3G21175 230 / 1e-73 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.005G152500 [exp] 180 / 3e-54 AT3G21175 208 / 4e-65 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.007G116700 [exp] 173 / 2e-51 AT3G21175 155 / 3e-44 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042200 [exp] 171 / 1e-50 AT3G21175 171 / 1e-50 ZIM LIKE 1, GATA TRANSCRIPTION FACTOR 24, ZIM-like 1 (.1.2.3) Potri.017G042300 [exp] 66 / 2e-13 AT1G51600 71 / 9e-16 GATA TRANSCRIPTION FACTOR 28, ZIM-LIKE 2 (.1.2) Potri.015G061900 [exp] 57 / 4e-09 AT5G61380 474 / 2e-161 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032839 [exp] 277 / 4e-93 AT4G24470 231 / 8e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10002412 [exp] 276 / 6e-93 AT4G24470 231 / 6e-75 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10028166 [exp] 278 / 7e-90 AT4G24470 233 / 4e-72 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10042865 [exp] 189 / 2e-58 AT4G24470 131 / 6e-36 Zinc-finger protein expressed in Inflorescence Meristem, GATA TRANSCRIPTION FACTOR 25, GATA-type zinc finger protein with TIFY domain (.1.2.3) Lus10019077 [exp] 57 / 5e-09 AT5G61380 491 / 2e-168 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10015720 [exp] 57 / 6e-09 AT5G61380 470 / 3e-160 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10023229 [exp] 56 / 1e-08 AT5G24470 270 / 4e-85 pseudo-response regulator 5 (.1) Lus10000566 [exp] 56 / 1e-08 AT5G61380 433 / 5e-146 PSEUDO-RESPONSE REGULATOR 1, TIMING OF CAB EXPRESSION 1, CCT motif -containing response regulator protein (.1) Lus10019899 [exp] 56 / 2e-08 AT5G02810 347 / 4e-109 pseudo-response regulator 7 (.1) Lus10008879 [exp] 55 / 3e-08 AT5G24470 316 / 4e-98 pseudo-response regulator 5 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0167 [poplar] [flax] Zn_Beta_Ribbon PF00320 [poplar] [flax] GATA GATA zinc finger CL0167 [poplar] [flax] PF06200 [poplar] [flax] tify tify domain CL0281 [poplar] [flax] CCT PF06203 [poplar] [flax] CCT CCT motif
Representative CDS sequence Show only first row Show all	>Potri.002G110900.1 pacid=42779311 polypeptide=Potri.002G110900.1.p locus=Potri.002G110900 ID=Potri.002G110900.1.v4.1 annot-version=v4.1 ATGTACACTCCCTCGCAGCCTATGAACGTTCACAATCAGATCGTCTCTCCTGGCGTTGACGACGACGGTGCCCCAGCCGATCCTATCGACCACCACCATC ACATTCACTACGAAGACGGCACCCCTGCAGTCGTTGTCGAAGACGTCTCTCCCGATTCCGTCTACGTTACCGCCGGTGTCGCTTCGTCGGAACTCGGGAT TCAGCCTAGTGATGGTTCGAGTCAGCTCACCCTGACGTTTCGTGGACAAGTTTATGTTTTCGATTCCGTTACTCCTGACAAGGTTCAAGCTGTATTGTTA TTACTGGGAGGATGTGAATTAACTCCTGGTCTGGAAATGACTCCTCAAAATCAAAGGGGTGTGGGGGAGTACCCACCGCGGTGTACTCAACCTCAACGAG CAGCTTCATTAAGTAGGTTCCGGCAGAAGAGAAAAGAGCGATGCTTTGATAAGAAAGTTAGATATGGTGTCCGTCAGGAGGTTGCACTCAGGATGCAGCG GAATAAGGGTCAATTCACCTCTGCCAAGAAGTCTGAGGGAGGATATGGCTGGGATGGTGGTCAGGATTCAGCACAAGATGATAGCCAACATGAAACCTCG TGTACACATTGTGGCACTAATTCAAAATCCACTCCAATGATGCGGCGTGGTCCATCTGGTCCAAGGTCTCTTTGCAATGCCTGTGGGCTTTTTTGGGCAA ACAGAGGAACTTTGAGAGATCACTCCAAGAAAGCCCTGGAGCATTCTGTGGCTCCAATTGATCTGGGTGAAACAGAAGCCAACGAATCGGACTCTGTCCC TGCTATCAATACACATAACAATCCTGTTACTTACGCCAATGGTGGTGATACAGCCTTAATAACAGATCATTGA
AA sequence Show only first row Show all	>Potri.002G110900.1 pacid=42779311 polypeptide=Potri.002G110900.1.p locus=Potri.002G110900 ID=Potri.002G110900.1.v4.1 annot-version=v4.1 MYTPSQPMNVHNQIVSPGVDDDGAPADPIDHHHHIHYEDGTPAVVVEDVSPDSVYVTAGVASSELGIQPSDGSSQLTLTFRGQVYVFDSVTPDKVQAVLL LLGGCELTPGLEMTPQNQRGVGEYPPRCTQPQRAASLSRFRQKRKERCFDKKVRYGVRQEVALRMQRNKGQFTSAKKSEGGYGWDGGQDSAQDDSQHETS CTHCGTNSKSTPMMRRGPSGPRSLCNACGLFWANRGTLRDHSKKALEHSVAPIDLGETEANESDSVPAINTHNNPVTYANGGDTALITDH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G24470	GATA	GATA25, TIFY1, ...	Zinc-finger protein expressed ...		Potri.002G110900 [exp]	0	1	ZIM.2
AT5G23490			unknown protein		Potri.004G133700 [exp]	5.38	0.7185
AT2G33700			Protein phosphatase 2C family ...		Potri.005G253700 [exp]	11.13	0.6552
AT4G10570		UBP9	ubiquitin-specific protease 9 ...		Potri.011G152500 [exp]	15.87	0.6946
AT5G47940			unknown protein		Potri.001G265100 [exp]	17.54	0.6400
AT1G13450	Trihelix	GT-1	GT-1, Homeodomain-like superfa...		Potri.008G179700 [exp]	18.16	0.7091
AT1G48790		AMSH1	associated molecule with the S...		Potri.015G045800 [exp]	20.49	0.6481
AT5G23450		ATLCBK1	long-chain base (LCB) kinase 1...		Potri.008G002100 [exp]	20.78	0.6780
AT4G32750			unknown protein		Potri.006G241200 [exp]	23.23	0.6905
AT2G25760			Protein kinase family protein ...		Potri.006G236600 [exp]	30.49	0.6952
AT2G44970			alpha/beta-Hydrolases superfam...		Potri.014G055900 [exp]	30.85	0.6910

Compare expression of checked genes

Potri.002G110900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.