Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G65520 159 / 4e-49 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G051400 [exp] 42 / 0.0002 AT3G04240 1684 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G025600 [exp] 41 / 0.0004 AT3G04240 1689 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012031 [exp] 218 / 5e-72 AT5G65520 145 / 9e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016283 [exp] 209 / 2e-68 AT5G65520 144 / 3e-43 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10035948 [exp] 166 / 8e-52 AT5G65520 201 / 1e-65 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10025714 [exp] 164 / 9e-51 AT5G65520 209 / 6e-69 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10004779 [exp] 42 / 0.0003 AT3G04240 1683 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10003113 [exp] 42 / 0.0003 AT3G04240 1687 / 0.0 secret agent, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [poplar] [flax] TPR PF13414 [poplar] [flax] TPR_11 TPR repeat
Representative CDS sequence Show only first row Show all	>Potri.002G111300.2 pacid=42778619 polypeptide=Potri.002G111300.2.p locus=Potri.002G111300 ID=Potri.002G111300.2.v4.1 annot-version=v4.1 ATGATATTCGATCTTCTGCTACAAGCAGGTCTAATCCTGCTGGGAGTTTTCATGTTTCTAGCTATGCATAACATCCCTCAAAAATTCCTCTCCAAACTCC GTTACCGTAACCGCACCGATCTCCAAGCCAAACGCCACTTCGTTCTTGGCGCCCAGCTTATCGCTCAAGCCAGATCGCCCTCCAACTCTCGGTCCACAGC TACCTCCTTAGCCAAACAAGCTGAAGACGAAGCCAACAAAGCCATCTCTCTCGACCCCAAAGACGCCGCTTCTCACATCTTAAAAGCCTTATCTCTCGAT CTGCAAGGGTTCAGAACATCAGCTCTGGAATCGATAAACGTGGCTCTGTCGCCGCTGGCGGTTAAGTCGTTAAGCGCGAGCGAGAAAGGGGATGCGTTGT TTAAGAGGGCTGAATTGGCGATGGGGATGAACCGGCGCGGACGAGTTGAACCGGCGATTCAGGATTTGACCGAGGCAGTTAAGTTGAATAAGGATAATGC GAAAGCGTTTTGTTTGTTAGGTGAGTGTTACGAGGCAAATAAAATGATAGAGGAAGCTAAAGAGGCTTATGAGGAGGCTTTGAGGTTGCAGCCTGAGTTG GCTTCGGCGAAAGAGAAATTGGACCTCCTGCGTTCTTAA
AA sequence Show only first row Show all	>Potri.002G111300.2 pacid=42778619 polypeptide=Potri.002G111300.2.p locus=Potri.002G111300 ID=Potri.002G111300.2.v4.1 annot-version=v4.1 MIFDLLLQAGLILLGVFMFLAMHNIPQKFLSKLRYRNRTDLQAKRHFVLGAQLIAQARSPSNSRSTATSLAKQAEDEANKAISLDPKDAASHILKALSLD LQGFRTSALESINVALSPLAVKSLSASEKGDALFKRAELAMGMNRRGRVEPAIQDLTEAVKLNKDNAKAFCLLGECYEANKMIEEAKEAYEEALRLQPEL ASAKEKLDLLRS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65520			Tetratricopeptide repeat (TPR)...		Potri.002G111300 [exp]	0	1
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Potri.018G004000 [exp]	5.47	0.9059
AT1G68140			Protein of unknown function (D...		Potri.001G208800 [exp]	5.47	0.9126
AT3G52105			unknown protein		Potri.006G054200 [exp]	6.32	0.9223
AT4G12250		GAE5	UDP-D-glucuronate 4-epimerase ...		Potri.003G114600 [exp]	8.00	0.9208
AT2G16860			GCIP-interacting family protei...		Potri.004G176200 [exp]	8.12	0.9037
AT2G16890			UDP-Glycosyltransferase superf...		Potri.001G348100 [exp]	9.00	0.9217
					Potri.005G059900 [exp]	9.53	0.9113
AT3G19950			RING/U-box superfamily protein...		Potri.012G036700 [exp]	9.74	0.8686
AT2G23310		ATRER1C1, ATRER...	Rer1 family protein (.1.2)		Potri.005G141700 [exp]	10.90	0.8628
AT1G07650			Leucine-rich repeat transmembr...		Potri.004G063900 [exp]	11.74	0.9237

Compare expression of checked genes

Potri.002G111300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.