Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09700 214 / 7e-66 DRB1, HYL1 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) AT3G26932 65 / 2e-11 DRB3 dsRNA-binding protein 3 (.1.2) AT5G41070 65 / 2e-11 DRB5 dsRNA-binding protein 5 (.1) AT2G28380 63 / 9e-11 DRB2 dsRNA-binding protein 2 (.1) AT3G62800 54 / 5e-08 DRB4 double-stranded-RNA-binding protein 4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G153200 [exp] 489 / 1e-174 AT1G09700 224 / 7e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Potri.017G126700 [exp] 82 / 4e-17 AT1G09700 121 / 5e-30 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Potri.017G063700 [exp] 73 / 7e-14 AT5G41070 322 / 2e-106 dsRNA-binding protein 5 (.1) Potri.001G325300 [exp] 71 / 3e-13 AT3G26932 313 / 2e-103 dsRNA-binding protein 3 (.1.2) Potri.005G045700 [exp] 70 / 8e-13 AT3G26932 258 / 6e-81 dsRNA-binding protein 3 (.1.2) Potri.013G032400 [exp] 67 / 4e-12 AT5G41070 266 / 9e-84 dsRNA-binding protein 5 (.1) Potri.019G038100 [exp] 57 / 9e-10 AT3G62800 66 / 4e-13 double-stranded-RNA-binding protein 4 (.1.2.3) Potri.009G152900 [exp] 58 / 3e-09 AT3G26932 118 / 4e-29 dsRNA-binding protein 3 (.1.2) Potri.019G038226 [exp] 55 / 2e-08 AT3G62800 146 / 1e-41 double-stranded-RNA-binding protein 4 (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023248 [exp] 194 / 1e-55 AT1G09700 232 / 1e-68 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10008862 [exp] 192 / 5e-55 AT1G09700 237 / 1e-70 HYPONASTIC LEAVES 1, DSRNA-BINDING PROTEIN 1, dsRNA-binding domain-like superfamily protein (.1) Lus10035176 [exp] 73 / 5e-14 AT5G41070 321 / 4e-107 dsRNA-binding protein 5 (.1) Lus10032007 [exp] 73 / 5e-14 AT5G41070 320 / 8e-107 dsRNA-binding protein 5 (.1) Lus10000721 [exp] 59 / 2e-09 AT2G28380 442 / 3e-153 dsRNA-binding protein 2 (.1) Lus10021471 [exp] 52 / 3e-07 AT2G28380 435 / 2e-150 dsRNA-binding protein 2 (.1) Lus10003362 [exp] 45 / 2e-05 AT2G28380 116 / 1e-30 dsRNA-binding protein 2 (.1) Lus10008422 [exp] 45 / 9e-05 AT5G17920 1389 / 0.0 methionine synthesis 1, COBALAMIN-INDEPENDENT METHIONINE SYNTHASE, Cobalamin-independent synthase family protein (.1.2) Lus10002619 [exp] 42 / 0.0008 AT3G62800 162 / 6e-46 double-stranded-RNA-binding protein 4 (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0196 [poplar] [flax] DSRM PF00035 [poplar] [flax] dsrm Double-stranded RNA binding motif
Representative CDS sequence Show only first row Show all	>Potri.002G111400.2 pacid=42777612 polypeptide=Potri.002G111400.2.p locus=Potri.002G111400 ID=Potri.002G111400.2.v4.1 annot-version=v4.1 ATGCTCACCAACGAAGGATTCTCAGGTGTATCGAATTGCTATGTGTTCAAGAGTCGATTGCAGGAGTATGCACAAAAGGCTGGCTTGCCTACTCCTGTAT ATGAGACAATCAAAGAAGGCCCTTCCCATGAGCCATCCTTCAGGTCCACAGTGATTGTGAAGGATGTTAGATATGATTCTTTACCTGGTTTTTTCAATCG AAAGGCGGCAGAGCAATCGGCTGCTGAGGTTGCTCTTGTGGAGTTGGCTAAAGCTGGTGAAATTAATGAATCCACTTCTCAACCTGTTAATGAAACAGGA TTGTGCAAGAATCTACTTCAGGAGTATGCTCAAAAGATGAATTATGCAATTCCATTATATGAGTGCCAAAAGGATGAAACACCTGGAAGAGGACTTGTTT TTAAATGCACCGTTGAGATTGGGGGGATTCGGTATATTGGAGCATCAACTAAAACAAAAAAGGAAGCAGAGATCAAAGCTGCTAGAACTGCCTTGTTAGC AATCCAATCGAGTGGATCTGATAAACAAAGTGGCAGCTCTCAATTAACGGTAATTCCTTGCAGAAAGAGGGGAGTTGAGGCTAGTTTTCAAGAGGAGGCG GAAAATGTTCCCAAGCCAAAGAAGGCTCGGTTTAAAAAGAAAATGTTGAAAAAGAAACTCTCTAGGGACAGGATAAACAATGCTCAAAGTGAACTCACTG AAAAATTGAATATAGTAAATGGTCAATCAGGATCAGAAGCAGACCAAACAGATAAATCTGCCATCCGAGGAGCAAATTGCAAACTTTTAACAATGGAAAC AACAATGACTTTCCAGGATGGGAAGTCAGACACCAACTTGAATGGGGGAGAAACATTTGATATTGAAGGGGTTTTGACTTCCTATGATGCTGGTAATCCT GAAAGTGTGCAGTTGGCATCTCCAAATTTTAATCAAAGCAATCATGGGACTGGTGCTGAAATATCAGCCAAATCTAATGCAGGCACAGGTAAGGTTACTG GAATTATAGAGGTGGCTTCAATGGCAAACAATTCTGTCCTCGCTCAGATAGGGGCTTCGAACGCTTAA
AA sequence Show only first row Show all	>Potri.002G111400.2 pacid=42777612 polypeptide=Potri.002G111400.2.p locus=Potri.002G111400 ID=Potri.002G111400.2.v4.1 annot-version=v4.1 MLTNEGFSGVSNCYVFKSRLQEYAQKAGLPTPVYETIKEGPSHEPSFRSTVIVKDVRYDSLPGFFNRKAAEQSAAEVALVELAKAGEINESTSQPVNETG LCKNLLQEYAQKMNYAIPLYECQKDETPGRGLVFKCTVEIGGIRYIGASTKTKKEAEIKAARTALLAIQSSGSDKQSGSSQLTVIPCRKRGVEASFQEEA ENVPKPKKARFKKKMLKKKLSRDRINNAQSELTEKLNIVNGQSGSEADQTDKSAIRGANCKLLTMETTMTFQDGKSDTNLNGGETFDIEGVLTSYDAGNP ESVQLASPNFNQSNHGTGAEISAKSNAGTGKVTGIIEVASMANNSVLAQIGASNA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G09700		DRB1, HYL1	HYPONASTIC LEAVES 1, DSRNA-BIN...		Potri.002G111400 [exp]	0	1
AT3G07550			RNI-like superfamily protein (...		Potri.017G056400 [exp]	4.58	0.7557
AT1G66920			Protein kinase superfamily pro...		Potri.007G125100 [exp]	4.58	0.7344
AT1G17720		ATBBETA, ATB BE...	Protein phosphatase 2A, regula...		Potri.001G197300 [exp]	8.48	0.6997	Pt-ATB.1
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Potri.013G143900 [exp]	11.83	0.7524	FGT1
AT1G66920			Protein kinase superfamily pro...		Potri.007G126200 [exp]	19.89	0.7254
AT3G28730		NFD, SSRP1, ATH...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Potri.004G124000 [exp]	25.25	0.6948	ATHMG.2
AT2G35100		ARAD1	ARABINAN DEFICIENT 1, Exostosi...		Potri.012G124600 [exp]	26.72	0.7460
AT5G37480			unknown protein		Potri.013G065200 [exp]	31.27	0.6363
AT1G52280		AtRABG3d	RAB GTPase homolog G3D (.1)		Potri.003G053400 [exp]	32.84	0.7166
AT5G67380		ATCKA1, CKA1	casein kinase alpha 1 (.1.2)		Potri.005G145900 [exp]	32.93	0.6381	Pt-CKA1.2

Compare expression of checked genes

Potri.002G111400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.