Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18880 262 / 1e-80 VIL3, VEL2 VIN3-like 3, vernalization5/VIN3-like 2, vernalization5/VIN3-like (.1) AT5G57380 246 / 6e-74 VIN3 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) AT4G30200 234 / 3e-69 VEL1, VIL2 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) AT3G24440 187 / 3e-52 VRN5, VIL1 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) AT2G18870 74 / 1e-14 VIL4, VEL3 VIN3-like 4, vernalization5/VIN3-like 3, vernalization5/VIN3-like (.1) AT3G63500 52 / 1e-06 Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G167800 [exp] 308 / 2e-96 AT4G30200 627 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.018G091500 [exp] 295 / 1e-90 AT4G30200 612 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Potri.006G158676 [exp] 226 / 1e-65 AT3G24440 523 / 9e-179 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Potri.018G076500 [exp] 222 / 5e-64 AT3G24440 531 / 0.0 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028170 [exp] 447 / 4e-153 AT5G57380 239 / 8e-72 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10042869 [exp] 441 / 7e-151 AT5G57380 237 / 5e-71 VERNALIZATION INSENSITIVE 3, Fibronectin type III domain-containing protein (.1) Lus10038260 [exp] 212 / 3e-60 AT4G30200 561 / 0.0 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10019394 [exp] 204 / 3e-58 AT3G24440 499 / 8e-171 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10019393 [exp] 201 / 1e-57 AT3G24440 381 / 6e-126 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043250 [exp] 174 / 3e-49 AT3G24440 226 / 3e-68 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10043251 [exp] 172 / 1e-46 AT3G24440 432 / 8e-145 VERNALIZATION 5, VIN3-LIKE 1, Fibronectin type III domain-containing protein (.1) Lus10025841 [exp] 153 / 2e-39 AT4G30200 484 / 8e-163 VIN3-Like 2, vernalization5/VIN3-like 1, vernalization5/VIN3-like (.1.2.3.4) Lus10012327 [exp] 43 / 0.0005 AT5G48160 878 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2) Lus10006372 [exp] 43 / 0.0006 AT5G48160 871 / 0.0 OBERON2, Protein of unknown function (DUF1423) (.1), Protein of unknown function (DUF1423) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0390 [poplar] [flax] zf-FYVE-PHD PF07227 [poplar] [flax] PHD_Oberon PHD - plant homeodomain finger protein
Representative CDS sequence Show only first row Show all	>Potri.002G111600.2 pacid=42779974 polypeptide=Potri.002G111600.2.p locus=Potri.002G111600 ID=Potri.002G111600.2.v4.1 annot-version=v4.1 ATGAGAAAACCAGCGGAGGAGAAGCCATTGAACATGATGACACCAGGAGGTTTGTCAGGCTTTGTGCTTGACCCTTCAAAATGCAGTCAGCTAAGTTTGG GAGAGAGAAGAGAACTTGTTCGTGAGATTGCCCAATGGTCAAAAGATGCCCCTGAGGTTCTTAGTTCATTCACCCGTAGGGAGCTTCTTGAGATTATTTG TGCAGAGATGGGTAAAGAAAGGAAATACTCAGGATATACCAAGTTTCAAATGATTAAGCACCTCCTAAAGTTGGTTTCCAAGACGTCCAAGAGGAGCAGT ATAGGCAATATTATGGCTGTTTCTCCTGCCAATCCTCAATCTGGATTTAAAAGGCCAAGGAAGAAAGAATCTCAAGCTCACTTATCAATTGACCTGAATT TTGTTTCTGCAAAGAATAACAGTGAAGAATACATCAAAATGCAAATATGTGAAAATGCTGCTTGCGGAGCTACTTTATCTCCTGGTGATGCTTTTTGCAA GAGATGTTCTTGCTGTATCTGTCATTACTATGACGATAACAAGGATCCCAGTCTATGGTTAACCTGTGGTTCTGATTCTCTTGGTAAGAGATCTTGCGGA CTTACTTGCCATCTAATCTGTGCTTTGAAGGATGAAAGGACTGGAATTATGAAGATTGGTTGTCATTCAAAGCTAGAAGGAAGTTTCTACTGTGCTTCTT GCAGACAAGTTAATGAGCTGATGAGGAACTGGAGAAAGCAATTGTTGGTTGCCAAAGAGGCAAGAAGAGTTGATGTATTGTGTCAACGAGTCCTTTTGGG TTACAGGATGCTCACCGGAACCGAGCAATACAAGGAAATGCAGAAGAGCATGGAAACTGCCTTGCAATTGCTGAAAAATGAATTGGGACCTCTGGATCTG GTGTGTTCTAAGATGGCACGGGGAATTGTTAACAGACTCTCTTGTGGTGCTGAGGTTCAGAAATTGTGTGCTTCTACAGTGGAAGCTTTTGATTCAATGT GCGGTGGCAGTTATCATGGTTATGTGGAAAAGAAAGAGCCAGCATGTGCTGAGGTTCCGAAACTGTGTGCTTCTGCTGTGGAAGCCTTTGATTCAATGTT TGCGGACAATTATCATGGTTATTTGGAACAGAAAGAGCTAACATGTAAGTTCATTCTCACAATTCAAGTTCCAATCACTCTAAAGAGAACAGCTTGTCAG AACCAATTTGAAGAATCTTCCCCTAGGCTACAAGCAGGGAAGGACATAAACGAGAACAAGAATGAAGGGATGAACCTTGGATCATTTTCTCCTCCCACTC CTTGTAATTCCAATGGGATGCAGGAAGTATCAGGCTTAGATTGCAAAAAGCGAGTAGACGAGAGTGCTTATGAATATTCTGTGAGAGTTGTCAAATGGTT AGAGCTTAGAGGGCACATAGCTGAAGATTTCAGAGTAAAATTCCTTACTTGGTTTAGCCTGAAAGCAACACTGCAGGATAGACGGGTGGTCAACGTTTTT GTGGACGCTTTGATCGATGACCCACGAAGCTTAGCTGAGCAGCTCATTGACACCTTCATGGACAAGATATGCTGCGATAAAAAACCAGTTCCTTGGCACG GGTTTTGCACCAAGCTGTGGCATTAA
AA sequence Show only first row Show all	>Potri.002G111600.2 pacid=42779974 polypeptide=Potri.002G111600.2.p locus=Potri.002G111600 ID=Potri.002G111600.2.v4.1 annot-version=v4.1 MRKPAEEKPLNMMTPGGLSGFVLDPSKCSQLSLGERRELVREIAQWSKDAPEVLSSFTRRELLEIICAEMGKERKYSGYTKFQMIKHLLKLVSKTSKRSS IGNIMAVSPANPQSGFKRPRKKESQAHLSIDLNFVSAKNNSEEYIKMQICENAACGATLSPGDAFCKRCSCCICHYYDDNKDPSLWLTCGSDSLGKRSCG LTCHLICALKDERTGIMKIGCHSKLEGSFYCASCRQVNELMRNWRKQLLVAKEARRVDVLCQRVLLGYRMLTGTEQYKEMQKSMETALQLLKNELGPLDL VCSKMARGIVNRLSCGAEVQKLCASTVEAFDSMCGGSYHGYVEKKEPACAEVPKLCASAVEAFDSMFADNYHGYLEQKELTCKFILTIQVPITLKRTACQ NQFEESSPRLQAGKDINENKNEGMNLGSFSPPTPCNSNGMQEVSGLDCKKRVDESAYEYSVRVVKWLELRGHIAEDFRVKFLTWFSLKATLQDRRVVNVF VDALIDDPRSLAEQLIDTFMDKICCDKKPVPWHGFCTKLWH

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT2G18880		VIL3, VEL2	VIN3-like 3, vernalization5/VI...		Potri.002G111600 [exp]	0	1
AT5G59480			Haloacid dehalogenase-like hyd...		Potri.001G242300 [exp]	2.00	0.7880
AT1G70280			NHL domain-containing protein ...		Potri.008G147700 [exp]	3.46	0.7574
AT3G06600			unknown protein		Potri.008G103600 [exp]	5.00	0.7573
AT1G55360			Protein of Unknown Function (D...		Potri.003G221200 [exp]	6.24	0.7577
AT5G14850			Alg9-like mannosyltransferase ...		Potri.018G098700 [exp]	12.68	0.6871
AT5G61980		AGD1	ARF-GAP domain 1 (.1)		Potri.015G105500 [exp]	12.96	0.6870
AT4G15800		RALFL33	ralf-like 33 (.1)		Potri.013G017400 [exp]	15.09	0.7122	Pt-RALFL23.3
AT3G02630			Plant stearoyl-acyl-carrier-pr...		Potri.008G077900 [exp]	18.89	0.6996
AT5G58090			O-Glycosyl hydrolases family 1...		Potri.018G150400 [exp]	22.91	0.6940
AT2G19090			Protein of unknown function (D...		Potri.006G077000 [exp]	25.76	0.7375

Compare expression of checked genes

Potri.002G111600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.