Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49660 1229 / 0 XIP1 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) AT1G09970 657 / 0 RLK7, LRRXI-23 ,LRR XI-23 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) AT1G28440 601 / 0 HSL1 HAESA-like 1 (.1) AT4G28490 565 / 0 RLK5, HAESA RECEPTOR-LIKE PROTEIN KINASE 5, HAESA, Leucine-rich receptor-like protein kinase family protein (.1) AT3G19700 555 / 0 IKU2 HAIKU2, Leucine-rich repeat protein kinase family protein (.1) AT1G72180 546 / 2e-178 Leucine-rich receptor-like protein kinase family protein (.1) AT4G28650 528 / 4e-171 Leucine-rich repeat transmembrane protein kinase family protein (.1) AT5G65710 523 / 2e-169 HSL2 HAESA-like 2 (.1) AT5G65700 508 / 8e-164 BAM1 BARELY ANY MERISTEM 1, Leucine-rich receptor-like protein kinase family protein (.1.2) AT3G49670 507 / 2e-163 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G106800 [exp] 684 / 0 AT1G09970 1204 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.009G081800 [exp] 636 / 0 AT1G09970 1033 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Potri.011G058100 [exp] 613 / 0 AT1G28440 1309 / 0.0 HAESA-like 1 (.1) Potri.004G049100 [exp] 593 / 0 AT1G28440 1387 / 0.0 HAESA-like 1 (.1) Potri.019G078400 [exp] 582 / 0 AT1G72180 1060 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Potri.007G135400 [exp] 549 / 5e-179 AT1G28440 1109 / 0.0 HAESA-like 1 (.1) Potri.017G016600 [exp] 545 / 8e-178 AT1G28440 1130 / 0.0 HAESA-like 1 (.1) Potri.003G107600 [exp] 522 / 9e-169 AT5G61480 1259 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1) Potri.001G126100 [exp] 517 / 9e-167 AT5G61480 1258 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007233 [exp] 1360 / 0 AT5G49660 1224 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10028234 [exp] 1349 / 0 AT5G49660 1234 / 0.0 XYLEM INTERMIXED WITH PHLOEM 1, Leucine-rich repeat transmembrane protein kinase family protein (.1) Lus10007232 [exp] 643 / 0 AT1G09970 1186 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10028232 [exp] 641 / 0 AT1G09970 1181 / 0.0 receptor-like kinase 7, Leucine-rich receptor-like protein kinase family protein (.1.2) Lus10009476 [exp] 568 / 0 AT1G72180 995 / 0.0 Leucine-rich receptor-like protein kinase family protein (.1) Lus10013968 [exp] 561 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10015393 [exp] 555 / 0 AT1G28440 1372 / 0.0 HAESA-like 1 (.1) Lus10018636 [exp] 555 / 0 AT1G28440 1203 / 0.0 HAESA-like 1 (.1) Lus10039872 [exp] 513 / 2e-168 AT1G28440 942 / 0.0 HAESA-like 1 (.1) Lus10027221 [exp] 511 / 3e-164 AT5G61480 1263 / 0.0 TDIF receptor, PHLOEM INTERCALATED WITH XYLEM, Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain CL0016 [poplar] [flax] PF08263 [poplar] [flax] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G111700.1 pacid=42779664 polypeptide=Potri.002G111700.1.p locus=Potri.002G111700 ID=Potri.002G111700.1.v4.1 annot-version=v4.1 ATGTATGTGCACCTCTCTCTTTCTCAGTGCTACCACAGGAACCTGCTTTTCATCATCAAGACTAAAACTGCTGCACCCAATGATCCCCTCAATCATGTCG ACATTTATATACTTCTTCGCTTCCTCATCTCCTTCTCTGCAACGACCAACTTAACCACCTCCTCCATCTCTCCCTGGCTCTTTCTCCCCCCCCCCCCCCC CCCAACTCAAATGGCTTTTCAATCTATTATCCTCCTTTTTGTGTCACTGATTTCTCTAACCTATCCTATACAAACTATCAGCACTAACCCATATCAGTTC TTCAATCTCATGAAAGCTTCCTTGTCAGGAAATGTCCTGTCTGATTGGGATGTCACGGGAGGGAAATCATACTGCAATTTCACAGGAGTTAGCTGCAACA GTCGAGGATATGTTGAGATGATTGACGTAACTGGGTGGTCAATTTCTGGCCGTTTTCCATCTGGAATATGCTCTTACTTTCCAGACTTGCGTGTTCTTCG TCTAGGCCACAACAGTCTCCACGGTGACTTCCTTCACAGCATCGTCAACTGCTCTTTCTTGGAAGAGTTGAACTTGAGCTTTTTGTTTGCTACCGGAACA TATCCAGATTTCTCACCATTGAAATCCTTACGGATACTTGACGTGTCATACAACCGCTTCACGGGTGAGTTTCCCATGTCAGTAACAAATCTTTCCAATC TTGAGGTGCTCAACTTCAATGAAAACGATGGCCTCCACTTATGGCAACTGCCGGAGAATATTTCTAGGCTGACAAAGCTCAAAAGCATGATCTTGACAAC CTGCGTGCTGCATGGTCCAATCCCAGCATCAATCGGAAACATGACATCCCTTGTTGATCTTGAATTAAGCGGGAATTTCCTTTCTGGTCATATCCCTGTA GAGCTTGGATTGTTGAAGAACTTGCAGCAACTTGAGCTCTACTATAATTACCACCTTTCCGGCAATATACCTGAGGAATTTGGAAACTTGACAGAGCTTG TAGATTTGGACATCTCAGTCAATAAATTGACAGGAAAGATTCCAGAATCTGTATGTCGCCTTCCCAAGCTTGAGGTCCTGCAGCTTTACAACAACAGTCT CTCAGGAGAAATCCCCAGTGCTATCGCAAGTTCAACAACCTTGCGCATACTCTCAGTTTATGATAACTTTCTGACAGGAGAAGTGCCGCAGGACCTGGGG CACTTATCAGCTATGATCGTCGTAGACTTGTCAGAGAACCGCCTATCAGGGCCATTACCATCAGATGTTTGCAGGGGAGGTAAACTGCTCTACTTTCTTG TCCTGGATAACATGTTTTCTGGAGAGTTACCTGATAGCTATGCAAAATGCAAGACTCTTCTAAGGTTTCGACTGAGTCATAACCATTTGGAGGGCTCAAT ACCTGAAGGTATTCTAGGCCTTCCTCGTGTTTCAATTATTGATTTGAGTTATAATAATTTTAGTGGTCCAATTTCAAATACAATTGGAACTGCGAGAAAC TTGTCAGAACTGTTCGTACAAAGCAACAAGATTTCAGGTGTTATACCTCCTGAAATTTCCAGGGCTATCAATCTGGTAAAGATTGATCTCAGCAGTAATC TCCTGTATGGCCCCATACCTTCTGAAATTGGCTATCTAAAGAAGCTAAATTTACTGATCTTGCAAGGCAACAAGCTGAATTCTTCCATCCCCAAGTCGCT ATCTTTGTTAAGATCTCTCAATGTTCTTGATCTTTCCAACAACCTCTTGACTGGAAGTATCCCTGAAAGTCTGAGCGAGTTGTTACCAAACTCCATCAAC TTTTCAAACAATCTTCTCTCTGGTCCAATACCTCTCTCACTGATTAAGGGGGGACTGGTGGAGAGTTTTTCAGGCAACCCAGGTCTCTGTGTTCCAGTCT ATGTTGATTCATCAGATCAAAGTTTCCCCATGTGTTCACACACTTACAATCGAAAGAGGCTAAATTCTATCTGGGCAATCGGAATATCAGTAGCTATCCT AACTGTTGGAGCTCTCCTGTTTCTAAAACGACAATTCAGTAAAGACAGAGCTGTCAAGCAACACGATGAGACCACGGCTTCATCATTCTTCTCCTACGAT GTAAAGAGCTTCCACCGAATAAGTTTCGATCAACGTGAGATCCTTGAAGCTATGGTTGATAAGAACATAGTGGGCCATGGAGGATCTGGGACTGTGTACA GAATTGAACTGAGCAGTGGAGAGGTTGTTGCAGTGAAGAGGCTGTGGAGTAGGAAATCGAAAGATTCTGGTTCAGAGGATCAATTGCTTTTGGATAAGGA GTTGAAAACCGAGGTAGGGACTCTAGGAAGTATAAGGCACAAGAACATAGTCAAGTTGTACTGTTATTTCTCGAGTTCGGATTGCAACCTGTTGATTTAT GAGTATATGCCAAATGGGAACCTTTGGGACGCCCTTCACAAAGGGTGGATCCATCTGAATTGGCCCACCCGTCATCAAATAGCAGTTGGAGTTGCTCAGG GCTTGGCATATCTCCATCATGATCTCTTGCCACCAATCATTCACAGAGACATCAAGTCAACCAACATCCTGCTTGATGCTAACTACCGGCCCAAAGTTGC AGATTTTGGCATAGCCAAGGTTTTGCAAGCTAGAGGAGGGAAAGACTCCACCACCACTGTCATTGCAGGGACCTACGGTTATTTGGCCCCGGAATATGCG TACTCATCTAAAGCAACAACCAAGTGTGATGTCTACAGTTTTGGGGTGGTGTTGATGGAACTAATAACTGGGAAGAAGCCAGTAGAGGCAGATTATGGAG AGAGCAAGAATATTATAAATCTGGTTTCAACAAAAGTGGACACCAAGGAAGGAGTGATGGAGGTGCTGGACAAGAGGTTATCAGGGTCTTTCAGAGATGA GATGATTCAGGTTCTCCGGATCGCCATCCGATGCACCTACAAGACCCCAGCCCTTCGACCCACCATGAATGAAGTTGTCCAGTTGCTGATCGAGGCAGGC CAGAACAGAGTCGATTCTTTCAGGTCATCAAATAAGAGCAAAGAGGCATCAGACGTCACTAAAATAAAGAACCAGTTTGAAATATGA
AA sequence Show only first row Show all	>Potri.002G111700.1 pacid=42779664 polypeptide=Potri.002G111700.1.p locus=Potri.002G111700 ID=Potri.002G111700.1.v4.1 annot-version=v4.1 MYVHLSLSQCYHRNLLFIIKTKTAAPNDPLNHVDIYILLRFLISFSATTNLTTSSISPWLFLPPPPPPTQMAFQSIILLFVSLISLTYPIQTISTNPYQF FNLMKASLSGNVLSDWDVTGGKSYCNFTGVSCNSRGYVEMIDVTGWSISGRFPSGICSYFPDLRVLRLGHNSLHGDFLHSIVNCSFLEELNLSFLFATGT YPDFSPLKSLRILDVSYNRFTGEFPMSVTNLSNLEVLNFNENDGLHLWQLPENISRLTKLKSMILTTCVLHGPIPASIGNMTSLVDLELSGNFLSGHIPV ELGLLKNLQQLELYYNYHLSGNIPEEFGNLTELVDLDISVNKLTGKIPESVCRLPKLEVLQLYNNSLSGEIPSAIASSTTLRILSVYDNFLTGEVPQDLG HLSAMIVVDLSENRLSGPLPSDVCRGGKLLYFLVLDNMFSGELPDSYAKCKTLLRFRLSHNHLEGSIPEGILGLPRVSIIDLSYNNFSGPISNTIGTARN LSELFVQSNKISGVIPPEISRAINLVKIDLSSNLLYGPIPSEIGYLKKLNLLILQGNKLNSSIPKSLSLLRSLNVLDLSNNLLTGSIPESLSELLPNSIN FSNNLLSGPIPLSLIKGGLVESFSGNPGLCVPVYVDSSDQSFPMCSHTYNRKRLNSIWAIGISVAILTVGALLFLKRQFSKDRAVKQHDETTASSFFSYD VKSFHRISFDQREILEAMVDKNIVGHGGSGTVYRIELSSGEVVAVKRLWSRKSKDSGSEDQLLLDKELKTEVGTLGSIRHKNIVKLYCYFSSSDCNLLIY EYMPNGNLWDALHKGWIHLNWPTRHQIAVGVAQGLAYLHHDLLPPIIHRDIKSTNILLDANYRPKVADFGIAKVLQARGGKDSTTTVIAGTYGYLAPEYA YSSKATTKCDVYSFGVVLMELITGKKPVEADYGESKNIINLVSTKVDTKEGVMEVLDKRLSGSFRDEMIQVLRIAIRCTYKTPALRPTMNEVVQLLIEAG QNRVDSFRSSNKSKEASDVTKIKNQFEI

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G49660		XIP1	XYLEM INTERMIXED WITH PHLOEM 1...		Potri.002G111700 [exp]	0	1
AT1G35560	TCP	TCP23	TCP family transcription facto...		Potri.013G110700 [exp]	1.00	0.8644
AT5G63710			Leucine-rich repeat protein ki...		Potri.001G306000 [exp]	3.00	0.8345
AT2G39490			F-box family protein (.1)		Potri.008G050800 [exp]	3.87	0.8408
AT1G13920			Remorin family protein (.1)		Potri.010G160900 [exp]	6.32	0.8613
AT5G55650			unknown protein		Potri.014G167700 [exp]	7.07	0.8375
AT2G29660	C2H2ZnF		zinc finger (C2H2 type) family...		Potri.001G249900 [exp]	9.16	0.8358
AT2G47710			Adenine nucleotide alpha hydro...		Potri.002G193800 [exp]	12.32	0.7944
AT1G75980			Single hybrid motif superfamil...		Potri.002G018100 [exp]	12.84	0.7814
AT2G30620			winged-helix DNA-binding trans...		Potri.013G042700 [exp]	13.96	0.8087	HON902
AT1G66140	C2H2ZnF	ZFP4	zinc finger protein 4 (.1)		Potri.004G084100 [exp]	14.28	0.7423

Compare expression of checked genes

Potri.002G111700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.