Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50010 859 / 0 TUA2 tubulin alpha-2 chain (.1) AT1G04820 859 / 0 TOR2, TUA4 TORTIFOLIA 2, tubulin alpha-4 chain (.1) AT4G14960 857 / 0 TUA6 Tubulin/FtsZ family protein (.1.2) AT5G19780 831 / 0 TUA5 tubulin alpha-5 (.1) AT5G19770 831 / 0 TUA3 tubulin alpha-3 (.1) AT1G64740 805 / 0 TUA1 alpha-1 tubulin (.1) AT1G75780 366 / 2e-123 TUB1 tubulin beta-1 chain (.1) AT5G12250 364 / 2e-122 TUB6 beta-6 tubulin (.1) AT5G62690 363 / 5e-122 TUB2 tubulin beta chain 2 (.1) AT5G62700 363 / 5e-122 atgcp3, TUB3 tubulin beta chain 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G085100 [exp] 871 / 0 AT1G50010 852 / 0.0 tubulin alpha-2 chain (.1) Potri.017G081000 [exp] 869 / 0 AT4G14960 852 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.001G289500 [exp] 869 / 0 AT4G14960 855 / 0.0 Tubulin/FtsZ family protein (.1.2) Potri.003G220300 [exp] 832 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.001G004600 [exp] 827 / 0 AT5G19780 809 / 0.0 tubulin alpha-5 (.1) Potri.019G036000 [exp] 818 / 0 AT5G19780 813 / 0.0 tubulin alpha-5 (.1) Potri.013G056800 [exp] 809 / 0 AT5G19780 811 / 0.0 tubulin alpha-5 (.1) Potri.006G095000 [exp] 365 / 7e-123 AT5G23860 852 / 0.0 tubulin beta 8 (.1.2) Potri.001G272800 [exp] 364 / 1e-122 AT5G62700 857 / 0.0 tubulin beta chain 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035422 [exp] 871 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10031032 [exp] 871 / 0 AT1G50010 910 / 0.0 tubulin alpha-2 chain (.1) Lus10013765 [exp] 836 / 0 AT5G19770 914 / 0.0 tubulin alpha-3 (.1) Lus10039169 [exp] 836 / 0 AT5G19780 914 / 0.0 tubulin alpha-5 (.1) Lus10020281 [exp] 817 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10005705 [exp] 817 / 0 AT5G19780 850 / 0.0 tubulin alpha-5 (.1) Lus10002000 [exp] 365 / 9e-123 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10035497 [exp] 365 / 9e-123 AT5G62690 824 / 0.0 tubulin beta chain 2 (.1) Lus10026813 [exp] 363 / 5e-122 AT5G12250 867 / 0.0 beta-6 tubulin (.1) Lus10036069 [exp] 363 / 5e-122 AT5G12250 914 / 0.0 beta-6 tubulin (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0566 [poplar] [flax] Tubulin PF00091 [poplar] [flax] Tubulin Tubulin/FtsZ family, GTPase domain CL0442 [poplar] [flax] Tubulin_C PF03953 [poplar] [flax] Tubulin_C Tubulin C-terminal domain
Representative CDS sequence Show only first row Show all	>Potri.002G111900.1 pacid=42777632 polypeptide=Potri.002G111900.1.p locus=Potri.002G111900 ID=Potri.002G111900.1.v4.1 annot-version=v4.1 ATGAGAGAGTGCATTTCGATTCACATTGGTCAAGCCGGTATTCAGGTCGGCAATGCTTGCTGGGAGCTTTACTGCCTCGAACACGGCATTCAGCCTGATG GCCAGATGCCGAGTGACAAAACTGTTGGCGGAGGTGATGATGCTTTCAACACCTTTTTCAGTGAAACTGGTGCGGGAAAGCACGTCCCTCGTGCTATCTT TGTTGATCTTGAGCCCACTGTTATTGATGAAGTCAGGACTGGAGCATACCGCCAGCTTTTCCACCCCGAGCAACTCATCAGTGGAAAGGAAGATGCTGCC AACAACTTTGCCCGTGGCCACTATACCATTGGGAAAGAGATTGTTGATCTCTGCTTGGATCGTATCCGAAAGTTAGCTGATAACTGCACTGGCCTTCAAG GGTTTTTGGTGTTCAATGCTGTTGGAGGTGGTACTGGTTCTGGTCTTGGGTCACTTCTCCTGGAGAGGCTCTCTGTTGACTATGGCAAAAAATCAAAGCT TGGTTTCACTGTATATCCATCCCCGCAAGTTTCCACATCAGTTGTAGAGCCCTACAACAGTGTCCTTTCAACTCACTCTCTCCTTGAGCATACTGATGTT GCTGTGCTCCTTGACAATGAGGCCATCTATGACATTTGCAGGCGCTCTCTTGACATTGAGCGTCCCACTTACACCAATCTTAACCGCCTTGTTTCTCAGG TGATCTCATCTTTGACTGCCTCATTAAGGTTTGATGGAGCTCTTAATGTGGATGTTACTGAGTTCCAAACCAACTTGGTTCCATACCCCAGGATCCATTT CATGCTTTCCTCTTATGCCCCTGTCATCTCCGCAGAGAAGGCATACCATGAGCAGCTCTCCGTGGCTGAGATAACCAACAGTGCTTTTGAGCCATCATCC ATGATGGCCAAGTGTGACCCACGTCATGGCAAGTACATGGCTTGCTGCCTGATGTATAGAGGTGATGTTGTGCCCAAGGATGTGAATGCAGCTGTGGCTA CCATCAAGACCAAGCGCACAATCCAGTTCGTTGATTGGTGCCCAACTGGGTTCAAGTGTGGCATCAACTACCAGCCACCAACTGTTGTTCCAGGAGGCGA CCTTGCTAAGGTTCAGAGGGCTGTTTGCATGATTTCCAATTCCACAAGTGTTGCAGAAGTCTTCTCTCGCATTGACCACAAGTTTGATCTCATGTATGCC AAGCGTGCGTTTGTGCACTGGTATGTTGGCGAGGGTATGGAGGAAGGAGAGTTCTCAGAGGCTCGTGAGGATCTTGCTGCCCTGGAGAAGGATTATGAGG AGGTTGGGGCTGAATCTCCCGATGGAGAGGATGGTGATGAAGGAGATGAGTACTGA
AA sequence Show only first row Show all	>Potri.002G111900.1 pacid=42777632 polypeptide=Potri.002G111900.1.p locus=Potri.002G111900 ID=Potri.002G111900.1.v4.1 annot-version=v4.1 MRECISIHIGQAGIQVGNACWELYCLEHGIQPDGQMPSDKTVGGGDDAFNTFFSETGAGKHVPRAIFVDLEPTVIDEVRTGAYRQLFHPEQLISGKEDAA NNFARGHYTIGKEIVDLCLDRIRKLADNCTGLQGFLVFNAVGGGTGSGLGSLLLERLSVDYGKKSKLGFTVYPSPQVSTSVVEPYNSVLSTHSLLEHTDV AVLLDNEAIYDICRRSLDIERPTYTNLNRLVSQVISSLTASLRFDGALNVDVTEFQTNLVPYPRIHFMLSSYAPVISAEKAYHEQLSVAEITNSAFEPSS MMAKCDPRHGKYMACCLMYRGDVVPKDVNAAVATIKTKRTIQFVDWCPTGFKCGINYQPPTVVPGGDLAKVQRAVCMISNSTSVAEVFSRIDHKFDLMYA KRAFVHWYVGEGMEEGEFSEAREDLAALEKDYEEVGAESPDGEDGDEGDEY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.002G111900 [exp]	0	1
AT3G27960			Tetratricopeptide repeat (TPR)...		Potri.008G094700 [exp]	1.00	0.9716
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.013G067300 [exp]	2.44	0.9600
AT5G54670		KATC, ATK3	KINESIN-LIKE PROTEIN IN ARABID...		Potri.001G416300 [exp]	2.44	0.9564	ATK2.2
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	3.46	0.9582
AT2G35120			Single hybrid motif superfamil...		Potri.012G123700 [exp]	3.74	0.9542	gdcH1
AT5G44030		IRX5, NWS2, CES...	IRREGULAR XYLEM 5, cellulose s...		Potri.002G257900 [exp]	3.87	0.9567
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	3.87	0.9445
AT5G55970			RING/U-box superfamily protein...		Potri.001G371200 [exp]	4.00	0.9531
AT1G10720			BSD domain-containing protein ...		Potri.014G014200 [exp]	6.00	0.9497
AT3G05270			Plant protein of unknown funct...		Potri.007G098500 [exp]	7.07	0.9501

Compare expression of checked genes

Potri.002G111900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.