Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G53060 242 / 9e-71 RNA-binding KH domain-containing protein (.1.2) AT5G15270 211 / 3e-60 RNA-binding KH domain-containing protein (.1.2) AT1G51580 201 / 7e-56 RNA-binding KH domain-containing protein (.1) AT5G64390 186 / 1e-49 HEN4 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) AT1G14170 154 / 1e-40 RNA-binding KH domain-containing protein (.1.2.3) AT5G46190 149 / 7e-38 RNA-binding KH domain-containing protein (.1) AT2G22600 140 / 6e-35 RNA-binding KH domain-containing protein (.1) AT4G18375 122 / 5e-29 RNA-binding KH domain-containing protein (.1.2) AT5G09560 102 / 1e-22 RNA-binding KH domain-containing protein (.1) AT4G26000 100 / 7e-22 PEP PEPPER, RNA-binding KH domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G251700 [exp] 260 / 2e-77 AT1G51580 434 / 9e-145 RNA-binding KH domain-containing protein (.1) Potri.015G011100 [exp] 241 / 4e-70 AT5G53060 699 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.004G123400 [exp] 204 / 2e-57 AT5G15270 596 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.012G017200 [exp] 203 / 2e-56 AT5G53060 656 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.017G085500 [exp] 196 / 9e-55 AT5G15270 592 / 0.0 RNA-binding KH domain-containing protein (.1.2) Potri.010G167100 [exp] 189 / 4e-52 AT5G15270 455 / 3e-155 RNA-binding KH domain-containing protein (.1.2) Potri.017G042500 [exp] 189 / 8e-51 AT5G64390 345 / 1e-106 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Potri.017G114400 [exp] 188 / 1e-50 AT5G15270 259 / 8e-78 RNA-binding KH domain-containing protein (.1.2) Potri.008G088600 [exp] 183 / 6e-50 AT5G15270 454 / 5e-155 RNA-binding KH domain-containing protein (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10028237 [exp] 629 / 0 AT5G64390 243 / 8e-71 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10007236 [exp] 624 / 0 AT5G64390 249 / 6e-73 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10034831 [exp] 226 / 2e-64 AT1G51580 409 / 2e-134 RNA-binding KH domain-containing protein (.1) Lus10005232 [exp] 219 / 2e-62 AT5G15270 634 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10030689 [exp] 209 / 2e-59 AT5G15270 638 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10035640 [exp] 191 / 2e-51 AT5G64390 337 / 8e-104 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10023300 [exp] 185 / 8e-50 AT5G46190 643 / 0.0 RNA-binding KH domain-containing protein (.1) Lus10010754 [exp] 186 / 1e-49 AT5G64390 311 / 5e-94 HUA ENHANCER 4, RNA-binding KH domain-containing protein (.1.2.3) Lus10022390 [exp] 182 / 5e-49 AT5G53060 692 / 0.0 RNA-binding KH domain-containing protein (.1.2) Lus10038509 [exp] 178 / 2e-47 AT5G46190 653 / 0.0 RNA-binding KH domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0007 [poplar] [flax] KH PF00013 [poplar] [flax] KH_1 KH domain
Representative CDS sequence Show only first row Show all	>Potri.002G112200.2 pacid=42777145 polypeptide=Potri.002G112200.2.p locus=Potri.002G112200 ID=Potri.002G112200.2.v4.1 annot-version=v4.1 ATGTCTACTGCATTGACGCCTTCAAAGAGACTGCATGATAGTAAGTCCACGGAGACCAATGGGAAAGGAAAGCGGCAAAACACAGCTGGCACCAATTCCC CCAATCAACCCTTGAAATCCTCTCCGGCTGCTGTAGTTTTCCGTATATTATGTCCTGCTCCAAAAATTGGCACTGTCACTGGGGAAGGTGGTGCTGTTAT TTCACAAATTCGTCAAGAAACTGGTGCAAAGGTTATCGTGGAGGAAAATATACCTGGGTGTGATGAGCAGATAATTGTTATCACTGGTTCTGATGAAAAG ACTGAAGTCAGTATTGAACAGAGCAAAAAGGATGGTGATGAAGAGGCTAATGTGGCTGAAGAGAGTGATAATAAAAATGATGGCAATGAGAAGGAAGAAG AGAAGGAAGGTGTTCCCGTAGAAGACTCAGGGACTGTAAAAGAAACTTCATCAATGCAGAAAGCGTTGTTGCTTGTTTCGGGAAAAATGTTTGAAGCAGA TCCGGTGACAGATGGAGGGGATGAGGAAAATAACAAGCCTTCTACTTTTATTTTGAGGTTACTTGTCCTTTCCAGTCAAGTTGGCTGCCTTTTGGGAAAG GGTGGCAGTGTAATCAAACAAATGTCAGCTGAAAGCGGGGCACAGATTAGGATCTCTCCTAGGGATAGACTTCCCATATGTTCCTCAGTTTCTGATGAGC TAGTTGAGATAACAGGAGAGATTGATGCAGTTAGGAAAGCTCTCCAATCAGTTTCTAAACAGCTTTTGGAGAATCCACCCAGGGATCATGACTCTTTCCC TGCCAATCCTTCTGGGACTTCATCACATTCATCCGGCCATTCTCATCCCAGGCCAGAAGCTTACCTGCAACGCCATTCTTTTTCTGGTCGTGGAAAACCT TATGCTGTTAGATCCCGGGATCGTCATGAAAGTGTTATCCAGGATCAAATGAAGCCTGTGCCTGATGTACTAACCTTCCGCTTATTGTGTCACAATGAGA GAGTAGGAGGTGTCATTGGAAAGGGAGGTACAATAATAAAGATTCTTAAGCAAGAAACTGGCTGTGATATTAAAGTTATGGAAGGAGTTTCTGATTCGGA GGACCGAGTAATTGTCATCTCTGGTCTGGCGCACCCAGATGATAGGATATCAGCTCCTCAAGATGCAGTTATTCGTGTGCAGACCAGGATAGCTATGGCT ATATCCAACAAAGAGAAGGCTATAATAGCAAGGCTTCTTGTTTCCTCTAATCAAATTGGTTGTCTCCTTGGCAAGGGTGGCGCCATCATGTCTGAAATGA GGAAGTCATCTGGCGCCTATATTCGTATACTAGGGAAGGACCAGATTCCAAATTGTGCTTCAGAAAGTGAAGGAGTGGTTCAGATAAACGGAGAGTTTGA AGTAGTTAAAGAGGCTCTTTTGCAGATAACCACTAGGTTAAGGCATCATTTCTTCCAAAATCTATTTCCTTCCATGGACCATCTTTCAAATCCTGCATTT TTGGATCAAGTACCTCCATTTCCTCCATATATGGGAAGGAAGGAACTCTCTCCTCCATTCCATTCATTTCCCAATTTTGATGGAATGGTTGGTGCACCTC CACATGTCAGTTTCCCTCCCCATGATGATCATCCTCCTTTCATGCACAATATTCATAGACCAGGGATGCCCCCACATATAGCTGAAAGAAAACCATGGGG TCCTCAGGGATTCGTTGAAGGTGGTGGCCCAATGGGCTTGCCAGACTTTGCAGGACCTCCACAAAGAAGAATTTCAGGTTTTGGAGGGGTGAGCCATCCA GCTATTATTACAAGTACTACTATAGAAGTTATTGTTCCTCGTACCATTGTTCCTGTAATTTATGGAGAAGATGGCGCATGTTTGAAACAAATTCGTCAGA TCTCTGATGCAAAAATTACCATTAACGAGCCAAAGCCAGGAGCTTCCGAAACTGTGATTATAATATCTGGGACACCTGAACAGACCCATGCAGCACAGAG TCTTATTCAAGCATTTGTTATGAGTGAAAGGGAGTCTTCCTGA
AA sequence Show only first row Show all	>Potri.002G112200.2 pacid=42777145 polypeptide=Potri.002G112200.2.p locus=Potri.002G112200 ID=Potri.002G112200.2.v4.1 annot-version=v4.1 MSTALTPSKRLHDSKSTETNGKGKRQNTAGTNSPNQPLKSSPAAVVFRILCPAPKIGTVTGEGGAVISQIRQETGAKVIVEENIPGCDEQIIVITGSDEK TEVSIEQSKKDGDEEANVAEESDNKNDGNEKEEEKEGVPVEDSGTVKETSSMQKALLLVSGKMFEADPVTDGGDEENNKPSTFILRLLVLSSQVGCLLGK GGSVIKQMSAESGAQIRISPRDRLPICSSVSDELVEITGEIDAVRKALQSVSKQLLENPPRDHDSFPANPSGTSSHSSGHSHPRPEAYLQRHSFSGRGKP YAVRSRDRHESVIQDQMKPVPDVLTFRLLCHNERVGGVIGKGGTIIKILKQETGCDIKVMEGVSDSEDRVIVISGLAHPDDRISAPQDAVIRVQTRIAMA ISNKEKAIIARLLVSSNQIGCLLGKGGAIMSEMRKSSGAYIRILGKDQIPNCASESEGVVQINGEFEVVKEALLQITTRLRHHFFQNLFPSMDHLSNPAF LDQVPPFPPYMGRKELSPPFHSFPNFDGMVGAPPHVSFPPHDDHPPFMHNIHRPGMPPHIAERKPWGPQGFVEGGGPMGLPDFAGPPQRRISGFGGVSHP AIITSTTIEVIVPRTIVPVIYGEDGACLKQIRQISDAKITINEPKPGASETVIIISGTPEQTHAAQSLIQAFVMSERESS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G53060			RNA-binding KH domain-containi...		Potri.002G112200 [exp]	0	1
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Potri.008G105200 [exp]	2.23	0.8481	Pt-PHYB.1
AT5G49630		AAP6	amino acid permease 6 (.1)		Potri.002G112100 [exp]	9.00	0.7736	Pt-AAP1.2
AT2G20740			Tetraspanin family protein (.1...		Potri.018G038400 [exp]	10.81	0.8397
AT4G27290			S-locus lectin protein kinase ...		Potri.011G125050 [exp]	11.83	0.7850
AT5G67570		EMB246, DG1, EM...	EMBRYO DEFECTIVE 246, embryo d...		Potri.007G004900 [exp]	12.00	0.8066
AT4G14880		OLD3, CYTACS1, ...	ONSET OF LEAF DEATH 3, O-acety...		Potri.013G035200 [exp]	12.00	0.8269
AT4G08850			Leucine-rich repeat receptor-l...		Potri.019G060400 [exp]	17.49	0.7680
AT1G01790		ATKEA1, KEA1	K+ efflux antiporter 1, K+ EFF...		Potri.014G080800 [exp]	18.13	0.7606
AT3G18840			Tetratricopeptide repeat (TPR)...		Potri.004G151500 [exp]	20.19	0.7864
AT4G14840			unknown protein		Potri.008G153800 [exp]	23.00	0.7829

Compare expression of checked genes

Potri.002G112200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.