Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10020 607 / 0 Protein of unknown function (DUF1005) (.1) AT4G29310 421 / 2e-145 Protein of unknown function (DUF1005) (.1) AT3G19680 380 / 3e-128 Protein of unknown function (DUF1005) (.1) AT1G50040 333 / 2e-110 Protein of unknown function (DUF1005) (.1) AT5G17640 307 / 1e-100 Protein of unknown function (DUF1005) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G150100 [exp] 753 / 0 AT1G10020 563 / 0.0 Protein of unknown function (DUF1005) (.1) Potri.009G084000 [exp] 440 / 2e-152 AT1G10020 389 / 3e-132 Protein of unknown function (DUF1005) (.1) Potri.001G288900 [exp] 427 / 2e-147 AT1G10020 365 / 5e-123 Protein of unknown function (DUF1005) (.1) Potri.013G071000 [exp] 305 / 5e-100 AT5G17640 639 / 0.0 Protein of unknown function (DUF1005) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10032807 [exp] 588 / 0 AT1G10020 549 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10034991 [exp] 409 / 2e-140 AT4G29310 553 / 0.0 Protein of unknown function (DUF1005) (.1) Lus10012451 [exp] 348 / 5e-116 AT3G19680 349 / 1e-115 Protein of unknown function (DUF1005) (.1) Lus10020509 [exp] 338 / 3e-111 AT3G19680 320 / 1e-103 Protein of unknown function (DUF1005) (.1) Lus10012933 [exp] 318 / 4e-106 AT4G29310 434 / 4e-152 Protein of unknown function (DUF1005) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06219 [poplar] [flax] DUF1005 Protein of unknown function (DUF1005)
Representative CDS sequence Show only first row Show all	>Potri.002G112600.1 pacid=42777902 polypeptide=Potri.002G112600.1.p locus=Potri.002G112600 ID=Potri.002G112600.1.v4.1 annot-version=v4.1 ATGGATCCCTGCCCTTTCGTGCGCATAACTGTAGGAAATCTCGCTCTAAAAATCCCTGTCGCTTCGAAACCTGCACGCTCTGTCGTTCACCCTTCATCCT CGCCCTGCTTTTGCAAAATCAAACTCAAGAACTTCCCCCTTCAAACGGCCGTCATTCCCTACACTCCACCAGACAACACCCAATTTCCTGAAGGCCAGCA CCAAACTCTAGCTGCCACTTTCCACCTATGCAAGTCCGATCTCGACCGGCTCGTTACCAAATCTATTTTCACTAACAAGCTCCACGTCAAAATCTCTATC TACACTGGCCGCCGCGGCAACACTTGTGGAGTGAACTCAGGGAGGTTGTTAGGGAAAGTTTCAGTACCTCTGGATCTTGCGGGAACGGAATCTAGAGGGG TTGTGTTTCATAATGGATGGATTTCTGTTGGAAAAGAGTGTGTTAAAGGTTCCTCCGCTCAATTTCATTTGAATGTCAAAGCTGAGCCTGATCCAAGGTT CGTGTTTCAATTTGATGGAGAACCTGAGTGCAGTCCCCAGGTGTTTCAGATCCAAGGCAATATTAGGCAGCCAGTTTTTACTTGTAAATTCAGCCTTAGA ACCACCACCGGTGACCGCAGTCAGAGATCCAGATCATTGCAAGGGGAGCCCAACAGCTCAAGGAGCTGGCTAAGCTCTTTTGGGAGCGAAAGAGAGAGAC CTCTAAAAGAACGAAAAGGCTGGTCAATAACAATCCACGACTTATCTGGCTCACCAGTAGCCGCAGCTTCAATGGTAACTCCATTTGTCCCCTCACCCGG TTCGGACAGGGTAAGCCGCTCTAACCCTGGCTCGTGGCTCATCCTCCGCCCCGGAGACGGTACCTGGAAACCCTGGGGTCGGCTCGAGGCTTGGCGCGAG CGAGGGTCATCTGATGGGCTTGGCTACCGTTTTGAACTAATCCCTGATACAAAGGGTAGTATGAGCGCAGCCAGTATTGTATTAGCAGAGAGCACACTAA GTTCGCACAAAGGAGGCAAGTTTGTAATTGATTTAGGAGCTGGCTCAAACGGCCGAGCCACGTCCCCCGTGGGCAGCCCAAGGGGTAGTGGCGATTACGG TCATGGATTGTGGCCTTATTGCATGTACAGAGGGTTTGTTATGTCAGCTAGCGTGGACGGAGAAGGAAAGTGCAGCAAACCTGGCGTGGAAGTGAGTGTG CAGCACGTGAATTGTACTGAAGATGCAGCTGCTTTCGTGGCATTAGCAGCAGCCGTTGATCTGAGTATGGATGCTTGTCAGCTTTTCTCACAACGGCTAA GAAAGGAGCTCTGTCAAGATCAGGATTTGCTTGGCTGA
AA sequence Show only first row Show all	>Potri.002G112600.1 pacid=42777902 polypeptide=Potri.002G112600.1.p locus=Potri.002G112600 ID=Potri.002G112600.1.v4.1 annot-version=v4.1 MDPCPFVRITVGNLALKIPVASKPARSVVHPSSSPCFCKIKLKNFPLQTAVIPYTPPDNTQFPEGQHQTLAATFHLCKSDLDRLVTKSIFTNKLHVKISI YTGRRGNTCGVNSGRLLGKVSVPLDLAGTESRGVVFHNGWISVGKECVKGSSAQFHLNVKAEPDPRFVFQFDGEPECSPQVFQIQGNIRQPVFTCKFSLR TTTGDRSQRSRSLQGEPNSSRSWLSSFGSERERPLKERKGWSITIHDLSGSPVAAASMVTPFVPSPGSDRVSRSNPGSWLILRPGDGTWKPWGRLEAWRE RGSSDGLGYRFELIPDTKGSMSAASIVLAESTLSSHKGGKFVIDLGAGSNGRATSPVGSPRGSGDYGHGLWPYCMYRGFVMSASVDGEGKCSKPGVEVSV QHVNCTEDAAAFVALAAAVDLSMDACQLFSQRLRKELCQDQDLLG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10020			Protein of unknown function (D...		Potri.002G112600 [exp]	0	1
AT1G54200			unknown protein		Potri.006G222700 [exp]	1.00	0.8452
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.001G266700 [exp]	6.00	0.8390
					Potri.006G088700 [exp]	10.09	0.8234
					Potri.003G149300 [exp]	11.22	0.8351
AT4G29890			choline monooxygenase, putativ...		Potri.006G072800 [exp]	15.87	0.7962
AT3G61550			RING/U-box superfamily protein...		Potri.014G091000 [exp]	16.43	0.8053
AT5G01720			RNI-like superfamily protein (...		Potri.006G105400 [exp]	17.74	0.8244
AT1G25472		CPuORF54	conserved peptide upstream ope...		Potri.010G125700 [exp]	19.77	0.7997
AT3G14470			NB-ARC domain-containing disea...		Potri.017G143820 [exp]	21.16	0.8222
AT3G02875		ILR1	IAA-LEUCINE RESISTANT 1, Pepti...		Potri.006G207300 [exp]	22.80	0.8089	ILR1.1

Compare expression of checked genes

Potri.002G112600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.