Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G37820 82 / 3e-17 unknown protein AT2G22795 78 / 6e-16 unknown protein AT4G33740 61 / 2e-10 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G008600 [exp] 86 / 1e-18 AT2G22795 103 / 2e-22 unknown protein Potri.009G083900 [exp] 75 / 6e-15 AT4G33740 94 / 2e-20 unknown protein Potri.001G288800 [exp] 69 / 7e-13 AT4G33740 93 / 7e-20 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10020507 [exp] 83 / 1e-17 AT4G33740 103 / 1e-23 unknown protein Lus10012453 [exp] 77 / 1e-15 AT4G33740 95 / 1e-20 unknown protein Lus10011571 [exp] 73 / 3e-14 AT4G37820 112 / 2e-25 unknown protein Lus10019253 [exp] 72 / 6e-14 AT4G37820 110 / 3e-25 unknown protein Lus10007239 [exp] 58 / 4e-10 AT2G22795 59 / 9e-11 unknown protein Lus10028240 [exp] 58 / 4e-10 AT2G22795 59 / 1e-10 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G112800.2 pacid=42777328 polypeptide=Potri.002G112800.2.p locus=Potri.002G112800 ID=Potri.002G112800.2.v4.1 annot-version=v4.1 ATGTTGAAGCAGTCATCCAGTAGAAACCTGAGGTCCAAAGGCTTTAAGGTAAAGCATTTCATTCAGGTATTTCTGTTGCTTGCCATTGGCGTCTGGTTGG TCAACCAGCTCAAGCACTCTTACCATAAGAAGGCAGCATACGAGGACAGTACTGGAAAGATCTCAGAAGAGGTTCGAGGCGATTATGAAGTCGTAAAACT TGGCAGGAAAGGCCTCCATCCTCGGGTAAGGGAAACAGGTTTAGAGATTGAAAATCATGAGGGTAAAGCAGAATTGGAAGAAGAAATCGAAGAAATTAAA CCTGGAGAAATTGAGGATGAAGGAAGTGGTGGGGATGAAGAAATAGATGGACATGATCAAGTAAGAACAGAAGAGGAAGAAACTGAGGAAGTAGAGGATC TCATTGATGTAGACGATAAGGAAAGGGAAGAAACAAATGAAGATCAAGAAATTGAAGAGAAGGGCGATCAACTTGAGGATGTAAGTTCACTAGATGATCA AACCCAAAATGAAGGCGAAAGGAATTTACAACAGTTAAGAGAAGAACATTACAGGGGAGATGATGCATCTAGCTCTGTGATGCAGAACTCCCAATCAATA ATCACACAACTTGGGATTGGAGGTCTGAGAAAGATTAAGGAAAACGAGATAGATAATGCAGAACACATAAAATTAGAGCAAGGGTATAAAAGCCATGGCG ATGAGGAGGTTGTTTTTTACCCAATCAGGTCAGGTCCATACGGAAATGATGCAAAAGATATCGGCTTGGATTCCCGTTCATTGATTGATGATCATATTGA TGGAGGAGGAGTTTTAGGGAAAGCCACGGCCTCTCTTTCTATTAAATACTAG
AA sequence Show only first row Show all	>Potri.002G112800.2 pacid=42777328 polypeptide=Potri.002G112800.2.p locus=Potri.002G112800 ID=Potri.002G112800.2.v4.1 annot-version=v4.1 MLKQSSSRNLRSKGFKVKHFIQVFLLLAIGVWLVNQLKHSYHKKAAYEDSTGKISEEVRGDYEVVKLGRKGLHPRVRETGLEIENHEGKAELEEEIEEIK PGEIEDEGSGGDEEIDGHDQVRTEEEETEEVEDLIDVDDKEREETNEDQEIEEKGDQLEDVSSLDDQTQNEGERNLQQLREEHYRGDDASSSVMQNSQSI ITQLGIGGLRKIKENEIDNAEHIKLEQGYKSHGDEEVVFYPIRSGPYGNDAKDIGLDSRSLIDDHIDGGGVLGKATASLSIKY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G37820			unknown protein		Potri.002G112800 [exp]	0	1
AT1G79720			Eukaryotic aspartyl protease f...		Potri.001G041700 [exp]	5.29	0.7651
AT2G13610		ABCG5	ATP-binding cassette G5, ABC-2...		Potri.005G064300 [exp]	6.32	0.7321	PtrWBC5-1
AT1G60590			Pectin lyase-like superfamily ...		Potri.010G042100 [exp]	6.92	0.7004
AT3G55580			Regulator of chromosome conden...		Potri.010G199100 [exp]	10.90	0.6491
AT5G07240		IQD24	IQ-domain 24 (.1)		Potri.015G142200 [exp]	12.00	0.6718
AT5G67360		ARA12	Subtilase family protein (.1)		Potri.002G120400 [exp]	15.81	0.6689
AT1G79720			Eukaryotic aspartyl protease f...		Potri.003G185175 [exp]	15.96	0.6533
AT3G51080	GATA	GATA6	GATA transcription factor 6 (....		Potri.007G016600 [exp]	22.24	0.6665
AT5G19730			Pectin lyase-like superfamily ...		Potri.018G068400 [exp]	22.44	0.6483
AT4G25780			CAP (Cysteine-rich secretory p...		Potri.018G096028 [exp]	27.34	0.6248

Compare expression of checked genes

Potri.002G112800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.