Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10040 471 / 2e-165 alpha/beta-Hydrolases superfamily protein (.1.2) AT4G25770 372 / 3e-126 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G51180 331 / 4e-111 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G29120 258 / 2e-81 Hydrolase-like protein family (.1.2.3.4.5) AT1G09980 48 / 1e-05 Putative serine esterase family protein (.1.2) AT1G58350 48 / 1e-05 ZW18 Putative serine esterase family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G096035 [exp] 397 / 5e-136 AT4G25770 502 / 1e-177 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.003G151300 [exp] 326 / 4e-109 AT5G51180 541 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.001G079400 [exp] 316 / 3e-105 AT5G51180 528 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.011G065700 [exp] 255 / 3e-80 AT1G29120 580 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Potri.019G077700 [exp] 47 / 2e-05 AT1G58350 1036 / 0.0 Putative serine esterase family protein (.1.2.3) Potri.013G104400 [exp] 45 / 9e-05 AT1G58350 1027 / 0.0 Putative serine esterase family protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10001320 [exp] 362 / 2e-123 AT4G25770 436 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10006982 [exp] 357 / 1e-120 AT4G25770 432 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10032496 [exp] 315 / 9e-105 AT5G51180 525 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10042993 [exp] 299 / 3e-98 AT5G51180 501 / 1e-178 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10001893 [exp] 253 / 3e-79 AT1G29120 558 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10013909 [exp] 242 / 3e-75 AT1G29120 561 / 0.0 Hydrolase-like protein family (.1.2.3.4.5) Lus10038351 [exp] 43 / 0.0005 AT1G09980 1025 / 0.0 Putative serine esterase family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [poplar] [flax] AB_hydrolase PF01764 [poplar] [flax] Lipase_3 Lipase (class 3)
Representative CDS sequence Show only first row Show all	>Potri.002G113000.1 pacid=42779667 polypeptide=Potri.002G113000.1.p locus=Potri.002G113000 ID=Potri.002G113000.1.v4.1 annot-version=v4.1 ATGAACTTGACGCGCTATTACAAAACAGAAAATCCTTCCTCTCATTACATATTTCTTGTTTCTCTAATCATGGGTTCCGTTGAGCTGCAAGGTACTAGTG GAAGAAGATCATCACTAGAGATTGTTAATAAGAGTGGTGGAGAGTTAAAAGAGATGAATAGTGAAAAGAAGAGTAATAAGAAATCTTCATATTTTAGAAA ATTTGGATGCTTGAAAATTGAAGAGGATAATGAAAAAGGGAGTGTTGTGGAGACAACAGGAGAGCCTGTAAATCCTACTCACCTAATTATTATGGTTAAC GGTATCGTTGGCAGTGCTCAAGATTGGAAATTTGCGGCTAAGCAGTTTTTGAAGAAGTATCCCAGAGACGTTGTTGTTCACCGCAGCAAAGTTAATTCAT CAATGTTGACATTTGATGGTGTAGATGTAATGGGAGACAGACTAGCAGAAGAGGTGATATCAGTGAAGAAAAGACACCCATCTGTTCAGAAGATCTCATT CGTTGGCCATTCATTAGGTGGGTTGATTGCAAGATATGCTATTGCTAGGCTATATGAACGAGATATCACCAAGGAAATTTCTCATGAAACCGGCAATTGT AAAAGTGATGAATCTGAAGATAAAGATAACTGCGTGCAAGAGAAATCCAGAGGCACAATTGCTGGATTGGAGCCCATGAATTTCATAACCTCTGCCACTC CACATCTTGGTTCGAGGTTTCATAAGCAGGTCCCAATGTTTTGTGGCTTTTACACTCTGGAAAAAGCAGCTGCTCGAATTGCTGGGTTTCTTGGTAGGAC TGGAAAACATCTGTTTTTGACTGATGTTGATGGTGGAAAACCTCCGCTTCTTTTTCAGATGACTAGTGACTCTGAAAATCTTAATTTTATATCTGCTTTG GAATCCTTTAAGCGTCGTGTGGCATATGCAAATGCAAGTTTTGACCACATTGTGGGATGGTGCACATCATCTTTACGGCGAAGAGATGAACTCCCTAAGA GACAACATCTCTCAAGACATGAGAAATATCCACATATTGTTAATGTGAAGACAACAGAAAATGCAAGCCCTCAGCATGAAATATCAGAGGTCAAAGCTTA TGATTGCAAGACTATTGACATGGAAGAGGAAATGATCAGAAGCTTGACACAGTTGAGCTGGGAACGAGTTGATGTTAACTTAAGTGGAAGTATGCAAAGG TTCTTGGCGCACAGCACCATTCAGGTGAAAATCTCCTGCATCAATTCTGATGGGGCTGACGTTGTCCAACACATGGTTGACAATTTTCTTTTGTGA
AA sequence Show only first row Show all	>Potri.002G113000.1 pacid=42779667 polypeptide=Potri.002G113000.1.p locus=Potri.002G113000 ID=Potri.002G113000.1.v4.1 annot-version=v4.1 MNLTRYYKTENPSSHYIFLVSLIMGSVELQGTSGRRSSLEIVNKSGGELKEMNSEKKSNKKSSYFRKFGCLKIEEDNEKGSVVETTGEPVNPTHLIIMVN GIVGSAQDWKFAAKQFLKKYPRDVVVHRSKVNSSMLTFDGVDVMGDRLAEEVISVKKRHPSVQKISFVGHSLGGLIARYAIARLYERDITKEISHETGNC KSDESEDKDNCVQEKSRGTIAGLEPMNFITSATPHLGSRFHKQVPMFCGFYTLEKAAARIAGFLGRTGKHLFLTDVDGGKPPLLFQMTSDSENLNFISAL ESFKRRVAYANASFDHIVGWCTSSLRRRDELPKRQHLSRHEKYPHIVNVKTTENASPQHEISEVKAYDCKTIDMEEEMIRSLTQLSWERVDVNLSGSMQR FLAHSTIQVKISCINSDGADVVQHMVDNFLL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10040			alpha/beta-Hydrolases superfam...		Potri.002G113000 [exp]	0	1
					Potri.006G021800 [exp]	2.23	0.8926
					Potri.019G017302 [exp]	4.89	0.8641
AT4G33920			Protein phosphatase 2C family ...		Potri.009G091600 [exp]	5.47	0.7885
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.001G335200 [exp]	5.65	0.8641
AT3G62020		GLP10	germin-like protein 10 (.1.2)		Potri.010G240600 [exp]	6.32	0.8497	Pt-GER2.19
AT5G36110		CYP716A1	"cytochrome P450, family 716, ...		Potri.011G137800 [exp]	6.92	0.8044
AT5G19650	OFP	ATOFP8, OFP8	ovate family protein 8 (.1)		Potri.002G262500 [exp]	11.00	0.8061
AT1G78955		CAMS1	camelliol C synthase 1 (.1)		Potri.004G132500 [exp]	11.48	0.8427	LCOSC2.4
AT2G01100			unknown protein		Potri.008G126800 [exp]	12.44	0.7690
AT1G23149		CPuORF29	conserved peptide upstream ope...		Potri.008G131550 [exp]	14.59	0.7434

Compare expression of checked genes

Potri.002G113000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.