Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58370 1064 / 0 ATXYN1, RXF12 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G08160 963 / 0 Atxyn3 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1.2) AT1G10050 952 / 0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) AT4G38650 265 / 3e-79 Glycosyl hydrolase family 10 protein (.1) AT4G33830 236 / 2e-68 Glycosyl hydrolase family 10 protein (.1) AT4G33840 226 / 9e-65 Glycosyl hydrolase family 10 protein (.1) AT4G38300 209 / 7e-62 glycosyl hydrolase family 10 protein (.1) AT4G33860 217 / 2e-61 Glycosyl hydrolase family 10 protein (.1) AT4G33810 194 / 1e-53 Glycosyl hydrolase superfamily protein (.1) AT4G33820 194 / 3e-53 Glycosyl hydrolase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G113132 [exp] 1126 / 0 AT1G58370 1352 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Potri.004G173300 [exp] 280 / 3e-85 AT4G38650 753 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087800 [exp] 219 / 3e-62 AT4G33840 573 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087900 [exp] 214 / 1e-60 AT4G33840 695 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087700 [exp] 210 / 4e-59 AT4G33860 529 / 0.0 Glycosyl hydrolase family 10 protein (.1) Potri.009G087600 [exp] 197 / 8e-55 AT4G33820 506 / 4e-175 Glycosyl hydrolase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007242 [exp] 1116 / 0 AT1G58370 1016 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028242 [exp] 1105 / 0 AT1G58370 998 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10007243 [exp] 1080 / 0 AT1G58370 1291 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10028243 [exp] 1077 / 0 AT1G58370 1278 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10037528 [exp] 1028 / 0 AT1G58370 1064 / 0.0 ARABIDOPSIS THALIANA XYLANASE 1, glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10011465 [exp] 581 / 0 AT1G10050 807 / 0.0 glycosyl hydrolase family 10 protein / carbohydrate-binding domain-containing protein (.1) Lus10025054 [exp] 295 / 1e-90 AT4G38650 677 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10034490 [exp] 236 / 4e-69 AT4G38650 566 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10014642 [exp] 232 / 7e-67 AT4G33840 663 / 0.0 Glycosyl hydrolase family 10 protein (.1) Lus10033786 [exp] 218 / 7e-62 AT4G33860 663 / 0.0 Glycosyl hydrolase family 10 protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [poplar] [flax] Glyco_hydro_tim PF00331 [poplar] [flax] Glyco_hydro_10 Glycosyl hydrolase family 10 CL0202 [poplar] [flax] GBD PF02018 [poplar] [flax] CBM_4_9 Carbohydrate binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G113066.1 pacid=42778469 polypeptide=Potri.002G113066.1.p locus=Potri.002G113066 ID=Potri.002G113066.1.v4.1 annot-version=v4.1 ATGGAAATACACTTTTCATCTCTCGCTCTTGTTTCCGTTGTGGTTTTGCATTTGGGTCTTTCTGCGGAATCAATTCCTGTCTACCAGGCCACAACCACAG GCCCTGTGGGTGCTGGAGATGACAACGTCATATTGAATCCTAGATTCGAGGATGGCCTTAACAATTGGTCTGGGAAAGGATGCAAGATTGAACTTCACAA ATCCATGGAAGATGGAAAAGTCTTTCCGCAATCAGGGATGTTCTTTGCTTCTGCAACAAATCGGACAGAAAATTGGAATGGAATCGAGCAGGATATCACT GGAAGAGTGCAACGAAAAGTTGCATATCAAGTTACTGCGGTGGTTCGAATATATGTTGACAATGACACCAGTGCTGGTGTACAAATCACATTGTGGCTTC AAGAACCTGATTTTCGTGAACAGTATATTTCCATTGCCAGTTCACAGGTAACAAATAAAGATTGGGTACAGTTGCAGGGAGAGTTCCTTCTTAACGAAAC CCCTTCAAGATTGGTGATATATCTAGAAGGCCCATCTCCAGGCACTGATATTCTTGTTAACAGTTTAGTAGTGAAGCGCGCTGAGAAAATTCCTGCTTCA GCACGACCATTTTCCAAGAATGCTACTTTTGGAGGGAATATAATCGAGAACAGCTATCTTGATGATGGCACCACAGGTTGGTTTCCTCTCGGTAACTGTG CCTTGAGTGTTGGAACTGGTTCACCGCATGTGCTTCCTCCAATGGCAAGAGATTCTCTTGGAACTTATGAGTCTTTAAGTGGCCGTTACATCATGGTAAC TAATCGGTCAGATTCTTGGATGGGTCCTGCGCAAATGATCACTGATAAACTAAAACTCTACTTGACATATCAAGTGTCTGCCTGGGTTCGAATTGGTCCT GGAGCAACTAGTCCTCAAATTGTGAATGTTGCCCTTGGTGTGGATGGCCAGTGGATCAACGGGGGTGAAGTTGAGTTTAATGATGACAATTGGCATGAAA TTGGTGGGTCCTTTAGAATTGAGAAGCAACCGTCTAATGTTATGGTTTATGTCCAAGGTCCTGCTTCTGGTGTTGACTTAATGGTTTCTGGTCTTCAAAT TTTCCCCGTAAACCGGCAAGTCAGGTTTAAGTACCTGAAGAAGCAAACAGATAAGATACGTAAGCGTGATATCATTCTAAAATTCTCAAGATCAGAAAGT AGCAATACAGTTGGCAACTCTGTTAAAGTCAGACAGATAAAAAATAGTTTTCCTTTGGGATCATGTGTAACCAGAACGAGCATGGACAATGAAAAGTTTG TTAAATTCCTGGTTAAAAGTTTTAACTGGGCTGTGTTTGAAAATGAACTAAAATGGTCCTGGACAGAACCACAAGAAGGTAAGTTCAACTACAGGGATGC TGATGAGTTGTTGGACTTGTGCAAGAGCTATAACATAGAAGTCCGAGGTCACTGCATCTTCTGGGAAATGGAGTACACAATTCAATCATGGGTTAGATCC CTGAACGCAAGTGGCTTGATGACTGCCGTTCAGAATCGCCTAACAGGCCTTCTCACACGCTACAAGGGACAGTTCAGGCACTATGATGTGAACAATGAAA TGCTGCACGGGTCTTTCTATCTGGATCGACTGGGAAAAGATATCCGAGCAAACATGTTCAAAACTTCCCATGAACTAGACCCATACGCCACCCTCTTTGT GAATGATTATCACATTGAGGATGGAAGTGACATCAGATCAACACCGGAGAAATACATACAACAAATTCTTGACCTCCAAAAACAAGGTGCACCAGTGGGA GGAATTGGTATCCAAGGTCATATTGATGTTCCAGTTGGACCAATTATCTGTTCTGCTCTGGATAAATTGGGCACTCTAGGCATTCCAATCTGGTTTACTG AACTTGATGTGTCTTGTCCTAACGAGTTTGTCAGAGCAGATGATTTGGAAGTAGTGCTTCGTGAAGCATTTGCACATCCTGCAGTTGAAGGTGTGATTCT TTGGGGATTTTGGGAGTTGTACATGTCCAGGAAAAATGCACACCTCGTGAATGCAGACGGTAAAATCAATGCAGCTGGTAAGAGATTCCTTTCCCTCAAG AAAGAGTGGCTATCTCATGCTTCTGGACATATTGATGAGCTAGGAGAATTCAGATTTAGAGGATTCCATGGGACATACAATGTGGAATTTGTTTCCACCA CAGAGAAAGTTAACATGACATTCGTTGTTGATCAGGGTGAGTCCCCACTAGTTGTGTCCATTGACTTGTAG
AA sequence Show only first row Show all	>Potri.002G113066.1 pacid=42778469 polypeptide=Potri.002G113066.1.p locus=Potri.002G113066 ID=Potri.002G113066.1.v4.1 annot-version=v4.1 MEIHFSSLALVSVVVLHLGLSAESIPVYQATTTGPVGAGDDNVILNPRFEDGLNNWSGKGCKIELHKSMEDGKVFPQSGMFFASATNRTENWNGIEQDIT GRVQRKVAYQVTAVVRIYVDNDTSAGVQITLWLQEPDFREQYISIASSQVTNKDWVQLQGEFLLNETPSRLVIYLEGPSPGTDILVNSLVVKRAEKIPAS ARPFSKNATFGGNIIENSYLDDGTTGWFPLGNCALSVGTGSPHVLPPMARDSLGTYESLSGRYIMVTNRSDSWMGPAQMITDKLKLYLTYQVSAWVRIGP GATSPQIVNVALGVDGQWINGGEVEFNDDNWHEIGGSFRIEKQPSNVMVYVQGPASGVDLMVSGLQIFPVNRQVRFKYLKKQTDKIRKRDIILKFSRSES SNTVGNSVKVRQIKNSFPLGSCVTRTSMDNEKFVKFLVKSFNWAVFENELKWSWTEPQEGKFNYRDADELLDLCKSYNIEVRGHCIFWEMEYTIQSWVRS LNASGLMTAVQNRLTGLLTRYKGQFRHYDVNNEMLHGSFYLDRLGKDIRANMFKTSHELDPYATLFVNDYHIEDGSDIRSTPEKYIQQILDLQKQGAPVG GIGIQGHIDVPVGPIICSALDKLGTLGIPIWFTELDVSCPNEFVRADDLEVVLREAFAHPAVEGVILWGFWELYMSRKNAHLVNADGKINAAGKRFLSLK KEWLSHASGHIDELGEFRFRGFHGTYNVEFVSTTEKVNMTFVVDQGESPLVVSIDL

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58370		ATXYN1, RXF12	ARABIDOPSIS THALIANA XYLANASE ...		Potri.002G113066 [exp]	0	1
AT5G17680			disease resistance protein (TI...		Potri.019G068200 [exp]	1.73	0.8271
AT3G30300			O-fucosyltransferase family pr...		Potri.017G101600 [exp]	5.29	0.7211
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014318 [exp]	8.94	0.7601
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014334 [exp]	9.16	0.8061
AT3G19300			Protein kinase superfamily pro...		Potri.009G100400 [exp]	9.89	0.7383
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014340 [exp]	12.04	0.7593
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014364 [exp]	16.24	0.7924
AT4G27220			NB-ARC domain-containing disea...		Potri.019G014370 [exp]	16.49	0.7302
AT1G68690		AtPERK9	proline-rich extensin-like rec...		Potri.008G111600 [exp]	16.97	0.6859
AT1G19270		DA1	DA1 (.1)		Potri.002G132700 [exp]	18.70	0.6660

Compare expression of checked genes

Potri.002G113066 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.