Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	RXW8.1
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58520 828 / 0 RXW8 lipases;hydrolases, acting on ester bonds (.1.2.3) AT1G10090 790 / 0 Early-responsive to dehydration stress protein (ERD4) (.1) AT3G01100 549 / 0 ATHYP1, HYP1 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) AT1G69450 510 / 5e-172 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT3G54510 391 / 7e-126 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) AT1G11960 324 / 1e-99 ERD (early-responsive to dehydration stress) family protein (.1) AT4G02900 322 / 8e-99 ERD (early-responsive to dehydration stress) family protein (.1) AT4G22120 322 / 1e-98 ERD (early-responsive to dehydration stress) family protein AT4G04340 313 / 2e-95 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2), ERD (early-responsive to dehydration stress) family protein (.3) AT4G15430 308 / 1e-93 ERD (early-responsive to dehydration stress) family protein (.1), ERD (early-responsive to dehydration stress) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G115800 [exp] 561 / 0 AT3G01100 866 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Potri.010G164100 [exp] 544 / 0 AT1G69450 844 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.008G091200 [exp] 530 / 2e-179 AT1G69450 872 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.003G200900 [exp] 423 / 4e-138 AT3G54510 886 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Potri.014G156100 [exp] 323 / 3e-99 AT3G21620 1104 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.002G226800 [exp] 314 / 6e-96 AT3G21620 1105 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Potri.004G006000 [exp] 302 / 2e-91 AT4G22120 1139 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.004G006100 [exp] 300 / 1e-90 AT4G22120 1113 / 0.0 ERD (early-responsive to dehydration stress) family protein Potri.011G009900 [exp] 296 / 3e-89 AT4G22120 1142 / 0.0 ERD (early-responsive to dehydration stress) family protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004597 [exp] 905 / 0 AT1G58520 845 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10004550 [exp] 898 / 0 AT1G58520 842 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10010365 [exp] 880 / 0 AT1G58520 800 / 0.0 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10032801 [exp] 546 / 0 AT1G58520 483 / 7e-163 lipases;hydrolases, acting on ester bonds (.1.2.3) Lus10005223 [exp] 503 / 7e-169 AT3G01100 895 / 0.0 ARABIDOPSIS THALIANA HYPOTHETICAL PROTEIN 1, hypothetical protein 1 (.1.2) Lus10037139 [exp] 502 / 2e-168 AT1G69450 890 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10030431 [exp] 501 / 4e-168 AT1G69450 867 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10043455 [exp] 379 / 7e-121 AT3G54510 883 / 0.0 Early-responsive to dehydration stress protein (ERD4) (.1), Early-responsive to dehydration stress protein (ERD4) (.2) Lus10035300 [exp] 333 / 4e-103 AT3G21620 1146 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1) Lus10030024 [exp] 330 / 6e-102 AT3G21620 1147 / 0.0 ERD (early-responsive to dehydration stress) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0416 [poplar] [flax] Anoctamin-like PF02714 [poplar] [flax] RSN1_7TM Calcium-dependent channel, 7TM region, putative phosphate CL0416 [poplar] [flax] PF13967 [poplar] [flax] RSN1_TM Late exocytosis, associated with Golgi transport
Representative CDS sequence Show only first row Show all	>Potri.002G113800.5 pacid=42780103 polypeptide=Potri.002G113800.5.p locus=Potri.002G113800 ID=Potri.002G113800.5.v4.1 annot-version=v4.1 ATGGACATTGGTGCCCTTTTAACTTCGGCCGCTATCAATACAGGTTTATCTGTGTTGCTTTTTTCACTGTATTCAATATTGAGAAAACAACCAAGCAACA CGATTGTGTATTTCGGGCGGAGGCTTGCTTCTTTAAACAACAGAAATAGCAGAAATCATTTCTCCTTCGAAAGGTTTGTGCCCTCTCCCAGTTGGATCGT CAAGGCATGGGAAACAACAGAAAATGAAATCTTGGCCATTGGTGGCCTTGATGCTGTGGTTTTCCAGAGGATACTTGTTTTCAGTATCAGAGTCTTTTCT ATTGCAGCTGTTACGTGTCTGTTCCTGGTGCTTCCAGTGAATTATTATGGGCAGGAGATGAAACACAAGCATATCCATGCCGAGTCCCTCAATGTATTTA CAATTGCAAATGTGAAAGAAGGCTCCAGATGGCTTTGGGCACACTGTCTCGCATTATATATCATATCCTGCTCAGCTTGTGTTCTTCTTTACTTTGAATA CAAAAGCATCACCAAGATGAGGCTAGCACACATAACAACATCTCCTCCAAATCCAAGTCATTTTACCATTCTTGTCCGTTCAATTCCATATTCAGTGGGA GAATCATACAGTAATTCTGTGAAGAAATTCTTTACAAATTATTATGCATCGAGCTACTTGTCTCATCAAATTGTGTATCGATGTGGTTTAGTTCAAAAAT TGATGGTTGATGCAGAAAAGATATGCATGAGGATTAAGGCTGCTCCCAAGGGCCAATCAAGTTTAAAGCCATGTTGTCTGTGTGGAGGAAGTACTTCGTT TAAGGTCCTCACTGATGAACCAGAAAGTGTCAAGGACAGTTTCAGTTATTCTAATTTGAATCTTGCCACCAGAGATAATGAGCGTTCTGCTGCTTTTGTT ATTTTCAAGACCCGCTATGCTGCTGTGGTTGCCACACAGATGCTTCAATCACCAAATCCCATGTCATGGGTGACAGAATTGGCCCCAGAACCACATGATG TTTTATGGTCAAATCTCTGTATACCATTTAGACAGCTTTGGCTCCGGAAGATAGCAACTCTTCTGGCATCTATAGTCTTCATGGTTCTGTTTCTTGCTCC AGTGACCTTTGTACAAGGCTTGACTCAACTAGAGAAGCTGTCACAAACATTTCCTTTTCTGAGAGGGTTTCTAAAACAGGACCTTATAAACCATGTGCTG ACTGGTTACCTGCCAAGCGTTATCTTAATATTGTTTCTGTATACTGTTCCACCGACAATGATGCTGTTTTCATCAGTGGAGGGGCCTGTTTCTCATAGTG GAAGGAAAAGGAGTGCATGCTTGAAAATCTTGTATTTCACAATTTGGAATGTTTTCTTTGTTAATCATGTATCAGGAGGTTTTCTCTTTGCGTTCAATAT GTTATCTAGTGTAGGAGACATTCCTGTAGAACTTGCCAAAGCAATACCAAATCAGGCTAGCTTCTTTGTGACTTATGTTTTAACATCAGGTTGGGCAAGT CTGTCATGTGAAGTGATGCAACCTTTTTCTCTCCTCTGCAATTTCCTTAAAAAACACCTTCTTAGAAACCATGAAGACTCATCTGATGGTCTTGTGTCCT TTCCATACCATACTGAAGTTCCAAGAGTCTTGCTGTTTGGTCTCATTGGCTTCACCTATTCGGTTATGGCACCTTTAATATTGCCCTTCTTGCTGATTTA CTTTTTACTGGCATATCTGGTATATCGAAATCAGATTGTCAATGTATACATAACAAAGTATGAAGGCGGTGGACAGTTGTGGCCTATTGTTCACAACACC ACAATCTTTTCATTGGTGCTGACACAAATGATATCTCTTGGTGTTTTTGGAATTAAAAAATCTCCAGTCGCATCGGGTTTCACCATTCCATTGATAATTT GCACACTTCTATTTAATGAGTATTGCAGGCAGCGATTTTTCCCAATTTTTAAGAAGAATGTTGCACAGGTTCTTTTAGAGATGGATAGACGAGATGAGCA GTCTGGGCGGATGGAAGAGATCCATCAACAGTTGCATTCAGCCTACTGTCAGTTACCGCTAACTTCCCATGAATTCTGTGAATCTGTACACAAGCTCTGT CAGGACAACATCCGAGGCCGAGAGGGCACCAAGTCAGGAAAAGAACCAAGTGAAGTAAGTGAACCCTGTGCTGTCTGCAATTTTGGAAAAGAAGGTTCTA TTGGGGAGTGA
AA sequence Show only first row Show all	>Potri.002G113800.5 pacid=42780103 polypeptide=Potri.002G113800.5.p locus=Potri.002G113800 ID=Potri.002G113800.5.v4.1 annot-version=v4.1 MDIGALLTSAAINTGLSVLLFSLYSILRKQPSNTIVYFGRRLASLNNRNSRNHFSFERFVPSPSWIVKAWETTENEILAIGGLDAVVFQRILVFSIRVFS IAAVTCLFLVLPVNYYGQEMKHKHIHAESLNVFTIANVKEGSRWLWAHCLALYIISCSACVLLYFEYKSITKMRLAHITTSPPNPSHFTILVRSIPYSVG ESYSNSVKKFFTNYYASSYLSHQIVYRCGLVQKLMVDAEKICMRIKAAPKGQSSLKPCCLCGGSTSFKVLTDEPESVKDSFSYSNLNLATRDNERSAAFV IFKTRYAAVVATQMLQSPNPMSWVTELAPEPHDVLWSNLCIPFRQLWLRKIATLLASIVFMVLFLAPVTFVQGLTQLEKLSQTFPFLRGFLKQDLINHVL TGYLPSVILILFLYTVPPTMMLFSSVEGPVSHSGRKRSACLKILYFTIWNVFFVNHVSGGFLFAFNMLSSVGDIPVELAKAIPNQASFFVTYVLTSGWAS LSCEVMQPFSLLCNFLKKHLLRNHEDSSDGLVSFPYHTEVPRVLLFGLIGFTYSVMAPLILPFLLIYFLLAYLVYRNQIVNVYITKYEGGGQLWPIVHNT TIFSLVLTQMISLGVFGIKKSPVASGFTIPLIICTLLFNEYCRQRFFPIFKKNVAQVLLEMDRRDEQSGRMEEIHQQLHSAYCQLPLTSHEFCESVHKLC QDNIRGREGTKSGKEPSEVSEPCAVCNFGKEGSIGE

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58520		RXW8	lipases;hydrolases, acting on ...		Potri.002G113800 [exp]	0	1	RXW8.1
AT2G47480			Protein of unknown function (D...		Potri.013G010600 [exp]	2.00	0.8778
					Potri.019G120050 [exp]	3.74	0.8304
AT1G28960		ATNUDX15, ATNUD...	ARABIDOPSIS THALIANA NUDIX HYD...		Potri.004G053200 [exp]	4.47	0.8675
AT1G72210	bHLH	bHLH096	basic helix-loop-helix (bHLH) ...		Potri.007G097600 [exp]	5.47	0.8153
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.019G025600 [exp]	8.48	0.7885	SEC.2
AT1G15240			Phox-associated domain;Phox-li...		Potri.003G053200 [exp]	8.66	0.8398
AT3G04240		SEC	secret agent, Tetratricopeptid...		Potri.013G051400 [exp]	9.94	0.7898	SEC.1
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.003G162000 [exp]	10.58	0.8280
AT4G18780		LEW2, IRX1, ATC...	LEAF WILTING 2, IRREGULAR XYLE...		Potri.011G069600 [exp]	12.00	0.8616
AT4G28840		TIE1	unknown protein		Potri.018G084100 [exp]	14.14	0.7764

Compare expression of checked genes

Potri.002G113800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.