Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G49720 365 / 9e-129 unknown protein AT5G65810 365 / 1e-128 CGR3 cotton Golgi-related 3, unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G082400 [exp] 373 / 6e-132 AT3G49720 393 / 7e-140 unknown protein Potri.001G288200 [exp] 358 / 6e-126 AT3G49720 342 / 1e-119 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011564 [exp] 376 / 5e-133 AT3G49720 422 / 4e-151 unknown protein Lus10019279 [exp] 374 / 4e-132 AT3G49720 421 / 7e-151 unknown protein Lus10012481 [exp] 365 / 2e-128 AT3G49720 332 / 1e-115 unknown protein Lus10032796 [exp] 364 / 2e-128 AT3G49720 337 / 7e-118 unknown protein Lus10039648 [exp] 346 / 4e-121 AT3G49720 405 / 2e-144 unknown protein Lus10007228 [exp] 343 / 5e-120 AT3G49720 401 / 6e-143 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.002G114000.2 pacid=42777742 polypeptide=Potri.002G114000.2.p locus=Potri.002G114000 ID=Potri.002G114000.2.v4.1 annot-version=v4.1 ATGTCAAGGAGATCATCAAAACATTCTCGGCGATATGGAGAGAGTGGAGGGATAGGTGCTCCTTTTGGCTTCGATTCCCAGCCACGTTCTTCCCCATATT TGCCCATTGCTCTTATTCTCCTGGGAGCAGTCTTTCTTTTTGCTTATTTATACAGCAGTCCAGGACAATTTGGCGGCAACAAACAGGCTTTTAACAAGGT TCAAGGTGATTTTTCATGCACTGTCGAGGTTCAAGAAGCAATCCCAATTTTGAAGAAGGCTTATGGAGATAGCATGCATAAAGTTTTGCATATTGGCCCC AATACTTGTTCTGTGGTTTCTCACTTGCTAAAAGAAGAGGAGACCGAAGCCTGGGGTGTCGAACCATATGACATAGAGGACGCTGATGGTAACTGCAAAG CACTAGTGCGGAGGGGTATCGTGCGCGTTGCTGATATCAAGTTTCCTCTTCCTTACAGACCAAAATCATTTTCTCTTGTAATTGTGTCAGATGCTGTGGA TTACTTGTCACCTAGATACCTCAACAAGACAATTCCAGATTTGGCTAGGGTATCAGCTGATGGTCTTGTAATATTTACAGGCCTTCCAGGTCAACACAGA GCTAAAGTTGCAGAAGTGACAAAATTTGGAAGGGCGGCTAAATTGAGGAGCTCGACTTGGTGGGTACGGTTTTTCCTTCAGACTAGCTTAGAAGAAAATG AAGCTGCCATTAAGAAGTTTCAGCAGGCTGCAACAAAGAGCTCATACCACCCAAATTGCCAAATTTTCCACCTCAAGTCATTCAATTGA
AA sequence Show only first row Show all	>Potri.002G114000.2 pacid=42777742 polypeptide=Potri.002G114000.2.p locus=Potri.002G114000 ID=Potri.002G114000.2.v4.1 annot-version=v4.1 MSRRSSKHSRRYGESGGIGAPFGFDSQPRSSPYLPIALILLGAVFLFAYLYSSPGQFGGNKQAFNKVQGDFSCTVEVQEAIPILKKAYGDSMHKVLHIGP NTCSVVSHLLKEEETEAWGVEPYDIEDADGNCKALVRRGIVRVADIKFPLPYRPKSFSLVIVSDAVDYLSPRYLNKTIPDLARVSADGLVIFTGLPGQHR AKVAEVTKFGRAAKLRSSTWWVRFFLQTSLEENEAAIKKFQQAATKSSYHPNCQIFHLKSFN

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G65810		CGR3	cotton Golgi-related 3, unknow...		Potri.002G114000 [exp]	0	1
AT3G48200			unknown protein		Potri.012G087400 [exp]	2.44	0.8796
AT5G04160			Nucleotide-sugar transporter f...		Potri.006G046600 [exp]	5.56	0.9023
AT2G12646			PLATZ transcription factor fam...		Potri.006G060500 [exp]	6.16	0.8523
AT1G03620			ELMO/CED-12 family protein (.1...		Potri.013G136200 [exp]	8.00	0.8728
AT1G19780		ATCNGC8	cyclic nucleotide gated channe...		Potri.003G183000 [exp]	15.68	0.8766
AT5G67200			Leucine-rich repeat protein ki...		Potri.005G141200 [exp]	18.33	0.8558
AT3G63200		PLP9, PLAIIIB ,...	PATATIN-like protein 9 (.1)		Potri.002G052600 [exp]	18.76	0.8023
AT2G46890			Protein of unknown function (D...		Potri.014G109200 [exp]	19.26	0.8675
AT3G58100		PDCB5	plasmodesmata callose-binding ...		Potri.013G119500 [exp]	23.15	0.8665
AT1G11680		EMB1738, CYP51A...	embryo defective 1738, CYTOCHR...		Potri.001G068400 [exp]	25.09	0.8708	CYP51.2

Compare expression of checked genes

Potri.002G114000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.