Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G10120 274 / 2e-89 bHLH bHLH074, CIB4 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G68920 200 / 3e-59 bHLH bHLH049, ACE1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT1G26260 182 / 3e-53 bHLH CIB5, bHLH076 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) AT3G23690 164 / 1e-46 bHLH bHLH077 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G07340 163 / 1e-45 bHLH bHLH062 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G34530 159 / 4e-45 bHLH bHLH063, CIB1 cryptochrome-interacting basic-helix-loop-helix 1 (.1) AT5G48560 154 / 5e-42 bHLH bHLH078 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G36540 149 / 5e-42 bHLH bHLH058, BEE2 BR enhanced expression 2 (.1.2) AT2G18300 147 / 8e-41 bHLH bHLH064, HBI1 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) AT5G50915 146 / 8e-41 bHLH bHLH137 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G146500 [exp] 681 / 0 AT1G10120 266 / 3e-86 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.010G136100 [exp] 192 / 1e-55 AT1G68920 387 / 3e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.002G235400 [exp] 189 / 1e-54 AT3G07340 257 / 2e-79 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.008G113200 [exp] 182 / 7e-52 AT1G68920 388 / 1e-129 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Potri.014G148900 [exp] 178 / 2e-50 AT3G07340 254 / 2e-78 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.002G248500 [exp] 172 / 5e-48 AT3G07340 349 / 5e-115 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G156000 [exp] 167 / 3e-47 AT4G34530 206 / 1e-62 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.009G117300 [exp] 157 / 9e-44 AT4G34530 213 / 2e-65 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Potri.012G104900 [exp] 154 / 3e-43 AT5G50915 177 / 3e-53 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10012484 [exp] 345 / 3e-117 AT1G10120 202 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10006491 [exp] 338 / 3e-114 AT1G10120 213 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10029110 [exp] 182 / 3e-52 AT1G68920 320 / 5e-104 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10013052 [exp] 182 / 3e-52 AT1G68920 316 / 2e-102 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.3) Lus10030908 [exp] 177 / 2e-48 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10030581 [exp] 172 / 1e-46 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10023562 [exp] 155 / 4e-44 AT1G26260 178 / 9e-54 cryptochrome-interacting basic-helix-loop-helix 5 (.1.2.3) Lus10040448 [exp] 154 / 2e-43 AT4G34530 177 / 4e-53 cryptochrome-interacting basic-helix-loop-helix 1 (.1) Lus10003172 [exp] 148 / 2e-41 AT5G48560 205 / 4e-62 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10033120 [exp] 146 / 3e-41 AT5G62610 265 / 9e-89 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00010 [poplar] [flax] HLH Helix-loop-helix DNA-binding domain
Representative CDS sequence Show only first row Show all	>Potri.002G114700.1 pacid=42779218 polypeptide=Potri.002G114700.1.p locus=Potri.002G114700 ID=Potri.002G114700.1.v4.1 annot-version=v4.1 ATGGATGGTAGCGGTGATAGTAATGATGATTTAGGATATCAAAATAGAGGTGAGAGTGTTATGAATTGTCCATCTTCAGGAATGAACACAAACCCCTTCT ATGTTTCTGCTTGGGATCCAGTAGTTTCACTAAGCCAGCCTGGGAATTTTGGTGGTTCATCAATAGTTTCTCAAAGTGGGTTTTCCAATTCTCCTTTCCC AATTGTAATGGAAAACCCAGGTATTAGTAACCTTGTTCATTACCCATCTGGTTCAGGCTTTGTTGAGCTGGTGCCAAAGTTTCCTGGCTTTGGAAGTGGG AATTTCTCAGAAATGGTTGGCTCTCTTGGCCTGACCGAGTGTGGTCAGATTACTCATACTGGGTGCCCTCCAAATTACAACAAGGAGGCAAACAATGCTC AACATCAGGAAGATCAGCAATTATCAGAAGAGACAAGTATAGGAGCTTCACCAAATGGAAAGAGAAGAAAACGAGTACCCGAGTCTAATTCTCCTTTGGA TCCAAACAAGAATACTGAAGGAGAGTTACGAAAGGATCTTTCTGGAGAGAGTTGTGATATTGCAAAAGAACTGGATGAAAAGACACAAAAAACTGAACAA AACCCCGGTCCTAATTTGCGGGGCAAACAGGCAGCTAAACAAGCTAAAGACGATACTCAAAGTGGAGAAGTTCCTAAAGAGAATTACTTTCATGTGAGAG CCAGAAGGGGTCAGGCTACCAATAGTCACAGCCTTGCAGAGAGGGTGAGAAGAGAAAAGATCAGCGAGCGGATGAGAATGCTACAAGAACTTGTCCCAGG ATGCAATAAGATTACTGGAAAGGCAGTAATGCTTGATGAGATTATCAACTATGTGCAATCATTGCAACAGCAAGTTGAGTTTTTGTCAATGAAACTTGCC ACTGTAAATCCGGAACTGCAAATTGATGTTGAGAGGATTCTATCTAAAGATATCCTTCATTCACGTGGTGGCAATGCAGCTATTCTAGGATTCAGTCCCG GGATAAGCTCACACCCGTATTCACATAGAATTTTTCAACCCGGCATACAAGTCATTCCAAATTCCAATCCACAATTTTCTCCAGCACCTCATGCTGTATT AGATAATGAGCTCCAGAGCTATTTCCAAATGGGATTTGATTCCAGTTCAGCTATTGACAATTTAGGACCGAATGCAGCACGTTTGAAACCGGAGCTCTGA
AA sequence Show only first row Show all	>Potri.002G114700.1 pacid=42779218 polypeptide=Potri.002G114700.1.p locus=Potri.002G114700 ID=Potri.002G114700.1.v4.1 annot-version=v4.1 MDGSGDSNDDLGYQNRGESVMNCPSSGMNTNPFYVSAWDPVVSLSQPGNFGGSSIVSQSGFSNSPFPIVMENPGISNLVHYPSGSGFVELVPKFPGFGSG NFSEMVGSLGLTECGQITHTGCPPNYNKEANNAQHQEDQQLSEETSIGASPNGKRRKRVPESNSPLDPNKNTEGELRKDLSGESCDIAKELDEKTQKTEQ NPGPNLRGKQAAKQAKDDTQSGEVPKENYFHVRARRGQATNSHSLAERVRREKISERMRMLQELVPGCNKITGKAVMLDEIINYVQSLQQQVEFLSMKLA TVNPELQIDVERILSKDILHSRGGNAAILGFSPGISSHPYSHRIFQPGIQVIPNSNPQFSPAPHAVLDNELQSYFQMGFDSSSAIDNLGPNAARLKPEL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.002G114700 [exp]	0	1
AT5G58320			Kinase interacting (KIP1-like)...		Potri.019G061600 [exp]	4.24	0.8239
AT1G10120	bHLH	bHLH074, CIB4	basic helix-loop-helix (bHLH) ...		Potri.005G146500 [exp]	6.32	0.8173
AT5G62410		TTN3, ATSMC4, A...	TITAN 3, structural maintenanc...		Potri.003G108400 [exp]	7.81	0.8323	CPE902,Pt-SMC2.2
AT2G01820		CYCJ18	Leucine-rich repeat protein ki...		Potri.010G103000 [exp]	10.00	0.7818
AT5G55540		LOP1, TRN1	LOPPED 1, tornado 1 (.1)		Potri.001G361200 [exp]	10.00	0.7862
AT1G27880			DEAD/DEAH box RNA helicase fam...		Potri.010G056500 [exp]	12.64	0.8320
AT3G14620		CYP72A8	"cytochrome P450, family 72, s...		Potri.011G117700 [exp]	13.41	0.7287	CYP72D2-1
AT1G08260		ESD7, EMB142, E...	TILTED 1, EARLY IN SHORT DAYS ...		Potri.004G185700 [exp]	13.49	0.7982
AT4G03390		SRF3	STRUBBELIG-receptor family 3 (...		Potri.019G103900 [exp]	15.58	0.8093
AT5G48390		ATZIP4	Tetratricopeptide repeat (TPR)...		Potri.014G175350 [exp]	19.79	0.8164

Compare expression of checked genes

Potri.002G114700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.