Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G58470 219 / 6e-69 XF41, ATRBP1 RNA-binding protein 1 (.1) AT5G55550 209 / 8e-64 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT4G26650 207 / 2e-63 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT4G14300 200 / 5e-61 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G07810 200 / 5e-60 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT5G47620 194 / 2e-58 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3), RNA-binding (RRM/RBD/RNP motifs) family protein (.4) AT2G33410 189 / 7e-57 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G17640 153 / 2e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT5G40490 154 / 4e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G13224 152 / 4e-43 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G012700 [exp] 448 / 7e-156 AT1G58470 180 / 2e-51 RNA-binding protein 1 (.1) Potri.008G170400 [exp] 213 / 1e-65 AT4G14300 317 / 2e-104 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G067500 [exp] 209 / 5e-64 AT4G14300 302 / 7e-99 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.002G258600 [exp] 206 / 5e-63 AT4G14300 277 / 1e-89 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.014G161600 [exp] 207 / 6e-63 AT3G07810 498 / 3e-174 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.014G195300 [exp] 205 / 7e-63 AT4G14300 305 / 2e-100 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.001G361300 [exp] 206 / 1e-62 AT3G07810 433 / 1e-148 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.002G222400 [exp] 205 / 4e-62 AT3G07810 439 / 8e-151 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Potri.011G088100 [exp] 205 / 5e-62 AT3G07810 428 / 1e-146 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007721 [exp] 261 / 8e-84 AT1G58470 222 / 6e-68 RNA-binding protein 1 (.1) Lus10018657 [exp] 254 / 2e-82 AT1G58470 233 / 1e-73 RNA-binding protein 1 (.1) Lus10022889 [exp] 214 / 2e-66 AT4G14300 315 / 9e-105 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10043168 [exp] 212 / 2e-64 AT3G07810 456 / 2e-157 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10032579 [exp] 208 / 3e-63 AT3G07810 447 / 8e-154 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10024937 [exp] 203 / 5e-62 AT4G14300 306 / 4e-101 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10006396 [exp] 199 / 2e-61 AT3G07810 351 / 2e-118 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10000537 [exp] 199 / 2e-59 AT3G07810 420 / 8e-143 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10038806 [exp] 197 / 1e-58 AT3G07810 417 / 2e-141 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) Lus10012348 [exp] 197 / 1e-58 AT3G07810 436 / 5e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [poplar] [flax] RRM PF00076 [poplar] [flax] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Potri.002G115000.1 pacid=42778576 polypeptide=Potri.002G115000.1.p locus=Potri.002G115000 ID=Potri.002G115000.1.v4.1 annot-version=v4.1 ATGAATATTGACGAGGCGAAGCTTTTTGTGGGAGGTATATCTCGTGAGACAAGCGAAGAAACTCTAAGAAATTACTTCAGCAAGTACGGTGTCGTTTCGC ATTCTCTTACTGCCAAGGACAAAATCACTAAATTTCCAAGAGGATTTGGTTTTGTTGTTTTCTCTGATCCTTCTTCTGCTGCTAGGGCTCTTCAAGATAA TCATGTTATTCTTGGGAGAACGGTAGAAGTGAAGAAAGCACTACCTAAAATTGAAAAACACCAGCAGCAACGGCAACACCACCCCCACGGTAATCAGGAA GCTAGCAACGGATTGGGTATGAATAGTGATAATAGTACCAGCGCTAAAAACAATAGGACCAAGAAGATCTTTGTGGGAGGTTTAGCATCTAGTCTAACTG AAGAACAGTTCAAAAATTACTTTGAACAGTTTGGGAGGACAGTAGATGTAGTTGTGATGCAAGATAGTTTAACCAACAGGCCAAGGGGCTTCGGATTTGT CACCTTTGATTCTGAGGAATCCGTTGACAAGGTTTTGCTGATCGGTTCTCATGAGTTGAATGGTAAGAGAGTGGAGGTTAAGAAGGCTGTGCCGAAAGAT AGAATTAATGGTCATATTGTTAGGAGTGGTTCAAATGGGTTCATTGGTAATGGTCCTCAACTTGCAAATCACCCTTTCTATGGTCAGGGATATGACCCAT GCTACACTTCTTTCCCGGTGTATAATGATGTTCATGGTCATTTTTATGGAATGAGTTTTTATGGGAGTGTATACCCTATGGTAGGATATGGAAGACCTGG TTTGGAGGTTGCACCAATGGCTCCTATGCTTGGAGCTGGACTGTTTCCTTACAGCAATGCCTGTCTTTATCCTGCTTATACGCATAACATGAGTAGCATC AGGGGTATGGAAATTGGTGGGCATAATCGGATTGTTGAGGCTGGTGTGAATGGTGAAGAATCTGGTTCGTGGCAGCAATGGACACGTTCCATCTGA
AA sequence Show only first row Show all	>Potri.002G115000.1 pacid=42778576 polypeptide=Potri.002G115000.1.p locus=Potri.002G115000 ID=Potri.002G115000.1.v4.1 annot-version=v4.1 MNIDEAKLFVGGISRETSEETLRNYFSKYGVVSHSLTAKDKITKFPRGFGFVVFSDPSSAARALQDNHVILGRTVEVKKALPKIEKHQQQRQHHPHGNQE ASNGLGMNSDNSTSAKNNRTKKIFVGGLASSLTEEQFKNYFEQFGRTVDVVVMQDSLTNRPRGFGFVTFDSEESVDKVLLIGSHELNGKRVEVKKAVPKD RINGHIVRSGSNGFIGNGPQLANHPFYGQGYDPCYTSFPVYNDVHGHFYGMSFYGSVYPMVGYGRPGLEVAPMAPMLGAGLFPYSNACLYPAYTHNMSSI RGMEIGGHNRIVEAGVNGEESGSWQQWTRSI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G58470		XF41, ATRBP1	RNA-binding protein 1 (.1)		Potri.002G115000 [exp]	0	1
AT5G23710			DNA binding;DNA-directed RNA p...		Potri.018G000800 [exp]	1.00	0.8989
AT5G13970			unknown protein		Potri.002G238100 [exp]	2.82	0.8922
AT3G55730	MYB	ATMYB109	myb domain protein 109 (.1)		Potri.008G062700 [exp]	3.46	0.8755
AT2G44410			RING/U-box superfamily protein...		Potri.009G023300 [exp]	4.58	0.8915
AT5G13240			transcription regulators (.1)		Potri.010G115800 [exp]	6.00	0.8672
AT2G37975			Yos1-like protein (.1)		Potri.016G109500 [exp]	6.32	0.8815
AT4G03220			Protein with RNI-like/FBD-like...		Potri.015G002100 [exp]	7.34	0.8784
AT1G03910			unknown protein		Potri.006G118700 [exp]	8.66	0.8633
AT1G22220		AUF2	auxin up-regulated f-box prote...		Potri.003G203000 [exp]	9.48	0.8610
AT2G47820			unknown protein		Potri.008G210200 [exp]	9.48	0.8820

Compare expression of checked genes

Potri.002G115000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.